BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54820.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331822 jgi|Araly1|331822|fgenesh1_pm.C_scaffold_8001165 1596 0.0
> Ahg331822 jgi|Araly1|331822|fgenesh1_pm.C_scaffold_8001165
Length=1431
Score = 1596 bits (864), Expect = 0.0
Identities = 1261/1448 (87%), Gaps = 46/1448 (3%)
Strand=Plus/Plus
Query 1 ATGGATTCAATTCAACAAGACAGATTATCTAGTCTTCCCGACATTCTTCTAATTATGATC 60
||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||
Sbjct 1 ATGGATTCAATTCAACAAGACAGATTATCAAGTCTTCCCGACGTTCTTTTAATTGTGATC 60
Query 61 ATCTCTTTCTTGCCGTTAAAGGAATGTGTAAGGACCAGTGTTCTCTCCAAGAGGTGGAGG 120
||||||||||||||||| |||||||| ||||| ||||||| |||||||| ||||||||||
Sbjct 61 ATCTCTTTCTTGCCGTTTAAGGAATGCGTAAGAACCAGTGCTCTCTCCAGGAGGTGGAGG 120
Query 121 TATCTCTGCT-TGGAGACCACAAACCTTTCTTTTAAGGAATCTGATTACGTGAATCCTGA 179
|||||||| | |||||||| |||||||||||||| ||||||||||| ||||| |||| |
Sbjct 121 TATCTCTG-TCAGGAGACCAGAAACCTTTCTTTTAGGGAATCTGATTTCGTGAGTCCTTA 179
Query 180 TATCACCGATGCTGAATATTCGAGAATTGTAGCTTATCG-TTCATTCTTTT-GTTCTGTG 237
||||| | || ||||||||||||| ||| ||||| | | |||||| |||| ||| || |
Sbjct 180 TATCA-C--TGGTGAATATTCGAGATTTGCAGCTTGT-GCTTCATT-TTTTAGTTTTGCG 234
Query 238 GATAAATGGGTCTCTATAACTCAACATCAAGTCGTCGAAAGCTTCGAGATTTGTTTCTCC 297
||||| ||| |||||| || |||| |||| ||||||||||||||||||||||||||||||
Sbjct 235 GATAATTGGCTCTCTAGAATTCAAGATCAGGTCGTCGAAAGCTTCGAGATTTGTTTCTCC 294
Query 298 CATCTGGTGGGTTTCGAGGATAAGATCGACGCTCTGATCGAATACGCTGTCTCCACACGA 357
||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||
Sbjct 295 AATCCGGTGGGTTTCGAGCATAAGATCGAGGCTCTGATCGAATACGCTGTCTCCAAACGA 354
Query 358 GTGAAGAATTTAGTTGTTGATTTGTCAAACCCCTCTTGGAGAAGCAATGGTGATATATCA 417
||||||||| |||| ||||||||||||||||| ||||||||| | || ||||||||||
Sbjct 355 GTGAAGAATCTAGTCATTGATTTGTCAAACCCCGCTTGGAGAAACTATAATGATATATCA 414
Query 418 T-A-TC---G--TCAT-T-TT-A-TGTA----TACATTGCCTAAAAGCGTTTACAGTCTA 462
| | || | |||| | || | | || ||||||||| ||||||||||||||||||
Sbjct 415 TCAGTCTGTGTATCATATCTTCATTTTATCGTTACATTGCCCAAAAGCGTTTACAGTCTA 474
Query 463 ACAA-CCTTGGAGTCACTGAAGATTTACGGGTGCAAGTTTGATCCTTCGAAATTCGTAAA 521
|||| |||| |||||||||||||| ||||||||||||||||||||||||| |||| |||
Sbjct 475 ACAACCCTT-GAGTCACTGAAGATCTACGGGTGCAAGTTTGATCCTTCGAGATTCACAAA 533
Query 522 CCCTGTATTGCTAAGAAGCCTCTCTATTGGTTGGGTCAGACTCGAAAACCTCCACTCTTT 581
||| |||||||||||||| ||||||||||||||| | ||||| ||||||||||| |||||
Sbjct 534 CCCGGTATTGCTAAGAAGACTCTCTATTGGTTGGATGAGACTTGAAAACCTCCAATCTTT 593
Query 582 ACTATCCAAATCTCCTTCCCTCCAGAGTCTAAGTATCAAA-AATTGTTGGGGCGTTGATA 640
|||||| ||| || ||||||||| |||||||||||||||| || || |||||||||||||
Sbjct 594 ACTATCAAAAGCTACTTCCCTCCTGAGTCTAAGTATCAAAGAA-TGCTGGGGCGTTGATA 652
Query 641 TCACGTCGATGGCCGGGCAGTTCAGAGAGCTAGTCATTGAGCATTCAGACTTCAGTTACA 700
| |||| ||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||
Sbjct 653 TGACGTGGATGGCCGGGCAGTTTAGAGAGCTAGTCCTTGAGAATTTAGACTTCAGTTACA 712
Query 701 TGCAATGTGCCTTTGAGCTGCCTCGTATACACAGCTTCAAGTACTCTGG-GGAGTTGTTC 759
|||||||| ||||||| |||||||||||||||||||| |||||||| || |||| ||
Sbjct 713 TGCAATGTTCCTTTGAACTGCCTCGTATACACAGCTTAAAGTACTCAGGCCAAGTT-TTT 771
Query 760 GAGTTCTACTTCGACGT-AGTGAATGTGATCATACCAAATGTGTACTTGGATTTTGGAGA 818
|| || ||||||||| | | ||||||||||||||||||| || |||||||||||||||||
Sbjct 772 GACTTTTACTTCGACATCA-TGAATGTGATCATACCAAAGGTCTACTTGGATTTTGGAGA 830
Query 819 AGAGCGAGTA-TATGATCTACAAAGC-CAATC-ATCAAGAATATCGGGTGAGGTTATTTC 875
|||||| | | ||||||| || | | || || | |||||||||| ||||| ||||| ||
Sbjct 831 AGAGCGTG-AGTATGATCAACCGA-CTCAGTCGA-CAAGAATATCTGGTGAAGTTATATC 887
Query 876 CCGTATCATTAACGACCTTAGAGCAGCTGAG-ACTTTAACTGTCTGCCCTTATATCCTCC 934
|||||| | ||||| || ||||||||| || || ||| | || ||||||||||||||||
Sbjct 888 TCGTATCCTCAACGATCTCAGAGCAGCT-AGCACCTTAGCCGTTTGCCCTTATATCCTCC 946
Query 935 AGGTTATCCCAGAATGTGAAAAGCCATCTGATTTGCTTCAACCTATGGAAACACGACACT 994
|| |||| ||||||| ||||||||| | || |||||||||||||||||||||||||||
Sbjct 947 AGACAATCCGAGAATGTAAAAAGCCATTTTATATGCTTCAACCTATGGAAACACGACACT 1006
Query 995 TGGTGTTAAGAACTAAGATGCA-TACCAAGGAGTTCAATGGAATAATTCTTCTTCTCAAC 1053
||||| ||||||| |||||| | ||| |||||||| |||||||| ||| ||||||||||
Sbjct 1007 TGGTGCTAAGAACGAAGATG-AGTACGAAGGAGTTGAATGGAATCATTATTCTTCTCAAG 1065
Query 1054 AACTGCCCTAATTTGGAGACGCTTGGTTTTGATATTCTAACTCCATGTCCTTTCTC-G-G 1111
||||| || || |||||||| || ||||||| ||||| || || |||||||| | | |
Sbjct 1066 AACTGTCCAAACTTGGAGACTCTAAGTTTTGAGATTCTTCCTTCACGTCCTTTC-CAGAG 1124
Query 1112 CAACTTCGTCAGATGAAGGCATCGATCCTAAAACGTATTGGATGCAGAAGAGAACATGTA 1171
|| ||||||| ||||||| |||||||| ||||||| |||||||||||| |||||||||
Sbjct 1125 -AAATTCGTCATATGAAGGGATCGATCCGAAAACGTTTTGGATGCAGAACAGAACATGTG 1183
Query 1172 AGAGTCTAAGGAAGACACTGAAGGTCGTGGTTATTAGGAACTTTTGTGGTTCCTCAAACG 1231
||||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||
Sbjct 1184 AGAGTCTAAGGAAGACACTGAAGGTCGTGGTGGTAAGGGACTTTGGTGGTTCCTCAAACG 1243
Query 1232 AGCTAAATGTATTGAGGTATTTGATTCGATCAGCGAGCGGTGCTGGAGATGCGTTGGAAA 1291
|| ||||||||||||||||||||||||||| ||||||||| | |||| |||| |||||||
Sbjct 1244 AGTTAAATGTATTGAGGTATTTGATTCGATTAGCGAGCGGGGGTGGAAATGCATTGGAAA 1303
Query 1292 GAGTAGAGCTTTACGTGCCGAATGGGATGGAAGAAAGTCAAGCGATGGTGGTATTTGCTA 1351
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GGGTAGAGCTTTATGTGCCGAATGGGATGGAAGAAAGTCAAGCGATGGTGGTATTTGCTA 1363
Query 1352 AAGCGGAAATGTTACAGAGAACTTCGAAGCATGTACAAGTTCTTTGTGCACAACTCTTGA 1411
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 AAGCGGAGATGTTACAGAGAACTTCGAAGCATGTACAAGTTCTTTGTGCACAACTCTTGG 1423
Query 1412 AAAAATGA 1419
|||| |||
Sbjct 1424 AAAATTGA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5