BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54820.1 Length=1419 Score E Sequences producing significant alignments: (Bits) Value Ahg331822 jgi|Araly1|331822|fgenesh1_pm.C_scaffold_8001165 1596 0.0 > Ahg331822 jgi|Araly1|331822|fgenesh1_pm.C_scaffold_8001165 Length=1431 Score = 1596 bits (864), Expect = 0.0 Identities = 1261/1448 (87%), Gaps = 46/1448 (3%) Strand=Plus/Plus Query 1 ATGGATTCAATTCAACAAGACAGATTATCTAGTCTTCCCGACATTCTTCTAATTATGATC 60 ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||| Sbjct 1 ATGGATTCAATTCAACAAGACAGATTATCAAGTCTTCCCGACGTTCTTTTAATTGTGATC 60 Query 61 ATCTCTTTCTTGCCGTTAAAGGAATGTGTAAGGACCAGTGTTCTCTCCAAGAGGTGGAGG 120 ||||||||||||||||| |||||||| ||||| ||||||| |||||||| |||||||||| Sbjct 61 ATCTCTTTCTTGCCGTTTAAGGAATGCGTAAGAACCAGTGCTCTCTCCAGGAGGTGGAGG 120 Query 121 TATCTCTGCT-TGGAGACCACAAACCTTTCTTTTAAGGAATCTGATTACGTGAATCCTGA 179 |||||||| | |||||||| |||||||||||||| ||||||||||| ||||| |||| | Sbjct 121 TATCTCTG-TCAGGAGACCAGAAACCTTTCTTTTAGGGAATCTGATTTCGTGAGTCCTTA 179 Query 180 TATCACCGATGCTGAATATTCGAGAATTGTAGCTTATCG-TTCATTCTTTT-GTTCTGTG 237 ||||| | || ||||||||||||| ||| ||||| | | |||||| |||| ||| || | Sbjct 180 TATCA-C--TGGTGAATATTCGAGATTTGCAGCTTGT-GCTTCATT-TTTTAGTTTTGCG 234 Query 238 GATAAATGGGTCTCTATAACTCAACATCAAGTCGTCGAAAGCTTCGAGATTTGTTTCTCC 297 ||||| ||| |||||| || |||| |||| |||||||||||||||||||||||||||||| Sbjct 235 GATAATTGGCTCTCTAGAATTCAAGATCAGGTCGTCGAAAGCTTCGAGATTTGTTTCTCC 294 Query 298 CATCTGGTGGGTTTCGAGGATAAGATCGACGCTCTGATCGAATACGCTGTCTCCACACGA 357 ||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| Sbjct 295 AATCCGGTGGGTTTCGAGCATAAGATCGAGGCTCTGATCGAATACGCTGTCTCCAAACGA 354 Query 358 GTGAAGAATTTAGTTGTTGATTTGTCAAACCCCTCTTGGAGAAGCAATGGTGATATATCA 417 ||||||||| |||| ||||||||||||||||| ||||||||| | || |||||||||| Sbjct 355 GTGAAGAATCTAGTCATTGATTTGTCAAACCCCGCTTGGAGAAACTATAATGATATATCA 414 Query 418 T-A-TC---G--TCAT-T-TT-A-TGTA----TACATTGCCTAAAAGCGTTTACAGTCTA 462 | | || | |||| | || | | || ||||||||| |||||||||||||||||| Sbjct 415 TCAGTCTGTGTATCATATCTTCATTTTATCGTTACATTGCCCAAAAGCGTTTACAGTCTA 474 Query 463 ACAA-CCTTGGAGTCACTGAAGATTTACGGGTGCAAGTTTGATCCTTCGAAATTCGTAAA 521 |||| |||| |||||||||||||| ||||||||||||||||||||||||| |||| ||| Sbjct 475 ACAACCCTT-GAGTCACTGAAGATCTACGGGTGCAAGTTTGATCCTTCGAGATTCACAAA 533 Query 522 CCCTGTATTGCTAAGAAGCCTCTCTATTGGTTGGGTCAGACTCGAAAACCTCCACTCTTT 581 ||| |||||||||||||| ||||||||||||||| | ||||| ||||||||||| ||||| Sbjct 534 CCCGGTATTGCTAAGAAGACTCTCTATTGGTTGGATGAGACTTGAAAACCTCCAATCTTT 593 Query 582 ACTATCCAAATCTCCTTCCCTCCAGAGTCTAAGTATCAAA-AATTGTTGGGGCGTTGATA 640 |||||| ||| || ||||||||| |||||||||||||||| || || ||||||||||||| Sbjct 594 ACTATCAAAAGCTACTTCCCTCCTGAGTCTAAGTATCAAAGAA-TGCTGGGGCGTTGATA 652 Query 641 TCACGTCGATGGCCGGGCAGTTCAGAGAGCTAGTCATTGAGCATTCAGACTTCAGTTACA 700 | |||| ||||||||||||||| |||||||||||| ||||| ||| |||||||||||||| Sbjct 653 TGACGTGGATGGCCGGGCAGTTTAGAGAGCTAGTCCTTGAGAATTTAGACTTCAGTTACA 712 Query 701 TGCAATGTGCCTTTGAGCTGCCTCGTATACACAGCTTCAAGTACTCTGG-GGAGTTGTTC 759 |||||||| ||||||| |||||||||||||||||||| |||||||| || |||| || Sbjct 713 TGCAATGTTCCTTTGAACTGCCTCGTATACACAGCTTAAAGTACTCAGGCCAAGTT-TTT 771 Query 760 GAGTTCTACTTCGACGT-AGTGAATGTGATCATACCAAATGTGTACTTGGATTTTGGAGA 818 || || ||||||||| | | ||||||||||||||||||| || ||||||||||||||||| Sbjct 772 GACTTTTACTTCGACATCA-TGAATGTGATCATACCAAAGGTCTACTTGGATTTTGGAGA 830 Query 819 AGAGCGAGTA-TATGATCTACAAAGC-CAATC-ATCAAGAATATCGGGTGAGGTTATTTC 875 |||||| | | ||||||| || | | || || | |||||||||| ||||| ||||| || Sbjct 831 AGAGCGTG-AGTATGATCAACCGA-CTCAGTCGA-CAAGAATATCTGGTGAAGTTATATC 887 Query 876 CCGTATCATTAACGACCTTAGAGCAGCTGAG-ACTTTAACTGTCTGCCCTTATATCCTCC 934 |||||| | ||||| || ||||||||| || || ||| | || |||||||||||||||| Sbjct 888 TCGTATCCTCAACGATCTCAGAGCAGCT-AGCACCTTAGCCGTTTGCCCTTATATCCTCC 946 Query 935 AGGTTATCCCAGAATGTGAAAAGCCATCTGATTTGCTTCAACCTATGGAAACACGACACT 994 || |||| ||||||| ||||||||| | || ||||||||||||||||||||||||||| Sbjct 947 AGACAATCCGAGAATGTAAAAAGCCATTTTATATGCTTCAACCTATGGAAACACGACACT 1006 Query 995 TGGTGTTAAGAACTAAGATGCA-TACCAAGGAGTTCAATGGAATAATTCTTCTTCTCAAC 1053 ||||| ||||||| |||||| | ||| |||||||| |||||||| ||| |||||||||| Sbjct 1007 TGGTGCTAAGAACGAAGATG-AGTACGAAGGAGTTGAATGGAATCATTATTCTTCTCAAG 1065 Query 1054 AACTGCCCTAATTTGGAGACGCTTGGTTTTGATATTCTAACTCCATGTCCTTTCTC-G-G 1111 ||||| || || |||||||| || ||||||| ||||| || || |||||||| | | | Sbjct 1066 AACTGTCCAAACTTGGAGACTCTAAGTTTTGAGATTCTTCCTTCACGTCCTTTC-CAGAG 1124 Query 1112 CAACTTCGTCAGATGAAGGCATCGATCCTAAAACGTATTGGATGCAGAAGAGAACATGTA 1171 || ||||||| ||||||| |||||||| ||||||| |||||||||||| ||||||||| Sbjct 1125 -AAATTCGTCATATGAAGGGATCGATCCGAAAACGTTTTGGATGCAGAACAGAACATGTG 1183 Query 1172 AGAGTCTAAGGAAGACACTGAAGGTCGTGGTTATTAGGAACTTTTGTGGTTCCTCAAACG 1231 ||||||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||| Sbjct 1184 AGAGTCTAAGGAAGACACTGAAGGTCGTGGTGGTAAGGGACTTTGGTGGTTCCTCAAACG 1243 Query 1232 AGCTAAATGTATTGAGGTATTTGATTCGATCAGCGAGCGGTGCTGGAGATGCGTTGGAAA 1291 || ||||||||||||||||||||||||||| ||||||||| | |||| |||| ||||||| Sbjct 1244 AGTTAAATGTATTGAGGTATTTGATTCGATTAGCGAGCGGGGGTGGAAATGCATTGGAAA 1303 Query 1292 GAGTAGAGCTTTACGTGCCGAATGGGATGGAAGAAAGTCAAGCGATGGTGGTATTTGCTA 1351 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1304 GGGTAGAGCTTTATGTGCCGAATGGGATGGAAGAAAGTCAAGCGATGGTGGTATTTGCTA 1363 Query 1352 AAGCGGAAATGTTACAGAGAACTTCGAAGCATGTACAAGTTCTTTGTGCACAACTCTTGA 1411 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1364 AAGCGGAGATGTTACAGAGAACTTCGAAGCATGTACAAGTTCTTTGTGCACAACTCTTGG 1423 Query 1412 AAAAATGA 1419 |||| ||| Sbjct 1424 AAAATTGA 1431 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53059711285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5