BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54840.1
Length=1060
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495564 jgi|Araly1|495564|fgenesh2_kg.8__1380__AT5G54840.1 1576 0.0
> Ahg495564 jgi|Araly1|495564|fgenesh2_kg.8__1380__AT5G54840.1
Length=1003
Score = 1576 bits (853), Expect = 0.0
Identities = 942/986 (96%), Gaps = 2/986 (0%)
Strand=Plus/Plus
Query 24 aaaggaaaggcaaaaagaagATGTGAGCTTGTGAATGCCAAAAGATCACATAACT-T-TC 81
||||| ||| ||||||||||||||||||||||||| ||||||||||||||| || | ||
Sbjct 1 AAAGGGAAGACAAAAAGAAGATGTGAGCTTGTGAACGCCAAAAGATCACATCTCTCTCTC 60
Query 82 TCTCTGTTTCATCAATGGCCGAGAAAGTCCATGAGATCGCCGGAAAGATAACTCCTTTCT 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTGTTTCATCAATGGCCGAGAAAGTCCATGAGATCGCCGGAAAGATAACTCCTTTCT 120
Query 142 GCCGGAAAATAGTTCACGTGAACAGAAAATGGAGAATCATCGAGAGGGTATCGATCTTTG 201
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 121 GCCGGAAAATAGTTCACGTGAACATTAAATGGAGAATCATCGAGAGGGTATCGATTTTTG 180
Query 202 GAGATTTCTTTAGGTTTCTATGGAGAAAAATTGTTTCTTGTTCAAGTATCATCGAAAAAC 261
||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GAGATTTTTTTAGGTTTTTATGGAGAAAAATCGTTTCTTGTTCAAGTATCATCGAAAAAC 240
Query 262 CTATTCTTTACCGGCGAATCGTTCACAAGATTTCTTCCACCGCGGGCGATATCTTTGACG 321
||||||||||||||| |||||||||| ||||||||| || || || |||||||| ||||
Sbjct 241 CTATTCTTTACCGGCAAATCGTTCACCGGATTTCTTCAACAGCCGGTGATATCTTCGACG 300
Query 322 GAGACGACGATACTACGACAGAACCTACTGTTTCCGGTAGAAGGTTTGGTTCAAGTTCGG 381
|||||||||| ||| |||| |||| |||||||||| |||||||||||||||| ||||||
Sbjct 301 GAGACGACGACACTGCGACCGAACATACTGTTTCCAATAGAAGGTTTGGTTCAGGTTCGG 360
Query 382 ATTCGGATTTGGTTAGTCTCAAGATCAGTTTATTAGGCGATTGTCAAACAGGGAAGACTA 441
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 361 ATTCGGATTTGGTTAGTCTCAAGATTAGTCTATTAGGCGATTGTCAAACAGGGAAGACTA 420
Query 442 CTTTTGTAGTAAAATATGTTGGAGATGAGAATCAAAGTTTCTTGGAGATGACGGGTTTGA 501
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 421 CTTTTGTAATAAAATATGTTGGAGATGAGAATCAAGGTTTCTTGGAGATGACGGGTTTGA 480
Query 502 ATTTGATGGACAAAACTTTTTATGTTCAAGGAGTTACTATTTCGTTTAGCATTTGGGATG 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTTGATGGACAAAACTTTTTATGTTCAAGGAGTTACTATTTCGTTTAGCATTTGGGATG 540
Query 562 TGGGAGGTGATGAAAAGAGATCAAAAGATCATATACCAATTGCTTGTAAAGATGCAGTAG 621
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TAGGAGGTGATGAAAAGAGATCAAAAGATCATATACCAATTGCTTGTAAAGATGCAGTAG 600
Query 622 CAATCTTGTTCATGTTTGATCTAACCAGTCGATCTACTCTTAACAGTGTCTTCGGGTGGT 681
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 CAATCTTGTTCATGTTTGATCTAACTAGTCGATCTACTCTTAACAGTGTCTTCGGGTGGT 660
Query 682 ATAGCCAGGCAAGAAAATGGAACAAGACGGCAATTCCGATTCTAATAGGAACAAAATTCG 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATAGCCAGGCAAGAAAATGGAACAAGACGGCAATTCCGATTCTAATAGGAACAAAATTCG 720
Query 742 ATGACTTTGTTCGGCTCCCACCCAATCTTCAGTGGACCATCGTCACTCAGGCAAGAGCAT 801
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 721 ATGACTTTGTTCGGCTCCCACCCAATCTTCAGTGGACCATTGTCACTCAGGCAAGAGCGT 780
Query 802 ATGCGAAGGTGATGAATGCGTCATTGTTCTTCTCAAGTGCGACACACAACATAAATGTGA 861
| |||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||
Sbjct 781 ACGCGAAGGTGATGAAGGCATCATTGTTCTTTTCAAGTGCAACACACAACATAAATGTGA 840
Query 862 ACAAGATCTTCAAATTCATTTTGGCTAGACTTTTTAATTTGCCTTGGAAGATTGACAGAA 921
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 ACAAGATCTTCAAATTCATTTTGGCTAAACTTTTTAATTTGCCTTGGAAGATTGACAGAA 900
Query 922 ATTTGACCTTAGGTGAACCCATTATCGACTACGATTCCTAATTTAGTCTACTTTAATTAT 981
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATTTGACCCTAGGTGAACCCATTATCGACTACGATTCCTAATTTAGTCTACTTTAATTAT 960
Query 982 TTATCATTTTTGTACATAAttttttt 1007
||||||||||||||||||| ||||||
Sbjct 961 TTATCATTTTTGTACATAAGTTTTTT 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39457219095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5