BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54850.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950136 jgi|Araly1|950136|scaffold_802023.1 1007 0.0
> Ahg950136 jgi|Araly1|950136|scaffold_802023.1
Length=649
Score = 1007 bits (545), Expect = 0.0
Identities = 601/629 (96%), Gaps = 0/629 (0%)
Strand=Plus/Plus
Query 104 ATAATGGTTCAGAAGCTTGAACAGATCAAAGGTGGAGGAGGATCCATAAAAATAGGAGCA 163
|||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||
Sbjct 18 ATAATGGTTCAGAAGCTTGAACTGATCAAAGGTGGGGGTGGATCGATAAAAATAGGAGCA 77
Query 164 ACAGGAACAGTCGCTACTCTAATGACACGAGAGCTAGACTCCATGAAACAAACTTCGCCT 223
|||||||||||||| ||||||||||| || ||||| |||||||||||||||||||| |||
Sbjct 78 ACAGGAACAGTCGCAACTCTAATGACTCGGGAGCTGGACTCCATGAAACAAACTTCACCT 137
Query 224 AAGACTCCCACAACAAGACCCATTAGAACAACAATCCCTGTCTCAGTAGACTGTGGCACA 283
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 138 CAGACTCCCACAACGAGACCCATTAGAACAACGATCCCTGTCTCAGTAGACTGTGGCACA 197
Query 284 TCTTCTTCAACTCCAAGAAGAACAAAACCAAGAAAATCATCAGACGAAGCTAGCAGCAGC 343
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 198 TCTTCTTCAACTCCAAGAAGATCAAAACCAAGAAAATCATCAGACGAAGCTAGCAGCAGC 257
Query 344 AGCAATGTTAACAATGTTAGAACACCAAAGGGCCACAATGCCAAAACCACCCATCAGCTT 403
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 258 AGCAATGTTAACAATGTTAGAACACCAAAGGGTCACAATGCCAAAACCACCCATCAGCTT 317
Query 404 TCAATGCTTGGCTCTGATAATGTTAGAACATCAAAGGGTCACAATGCCAAAAGCATTCAT 463
||||||||||||||||||||||| |||||| | |||||||||||| | ||||||| ||||
Sbjct 318 TCAATGCTTGGCTCTGATAATGTCAGAACACCGAAGGGTCACAATACAAAAAGCACTCAT 377
Query 464 CAGCTTTCAATGCTCGGCTCTGATAATGTTAGAACACCAAAGGGTCATCACAATACCAAA 523
| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 378 CCGCTTTCAATGCTTGGCTCTGATAATGTTAGAACACCAAAGGGTCACCACAATACCAAA 437
Query 524 AGCACTCATCAGCTTCCAATGCTTGGCTCTGAAAATGTATCGTTGCAAGGAACCCCGAGA 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGCACTCATCAGCTTCCAATGCTTGGCTCTGAAAATGTATCGTTGCAAGGAACCCCGAGA 497
Query 584 AGAGAGAAGAGAATGAACATTGTGGAGATTGTGGACGTGAAATGTGGGAATCCAGATCGA 643
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 498 AGAGAGAAGAGAATGAACATTGTGGAGATTGTGGATGTGAAATGCGGGAATCCAGATCGA 557
Query 644 GCTTGGGCTAATCCGATAACTAGTAGACTCAAGAAGCTTGGATTCTCTAAACTCAACGAG 703
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 558 GCTTGGGCTAATCCGATAACTAGTAGACTCAAGAAGCTTGGATTCTCTAAACTCAATGAG 617
Query 704 AGCATTGGTTAAGAGCTCTGCAAAACTTT 732
||||| ||||||||||||| |||||||||
Sbjct 618 AGCATCGGTTAAGAGCTCTCCAAAACTTT 646
Score = 161 bits (87), Expect = 7e-39
Identities = 123/140 (88%), Gaps = 3/140 (2%)
Strand=Plus/Plus
Query 356 AATGTTAGAACACCAAAGGGCCACAATGCCAAAACCACCCATCAGCTTTCAATGCTTGGC 415
||||| |||||||| ||||| |||||| | |||| ||| |||| ||||||||||||||||
Sbjct 336 AATGTCAGAACACCGAAGGGTCACAATACAAAAAGCACTCATCCGCTTTCAATGCTTGGC 395
Query 416 TCTGATAATGTTAGAACATCAAAGGGTCAC-A-A-TGCCAAAAGCATTCATCAGCTTTCA 472
|||||||||||||||||| ||||||||||| | | | ||||||||| |||||||||| ||
Sbjct 396 TCTGATAATGTTAGAACACCAAAGGGTCACCACAATACCAAAAGCACTCATCAGCTTCCA 455
Query 473 ATGCTCGGCTCTGATAATGT 492
||||| |||||||| |||||
Sbjct 456 ATGCTTGGCTCTGAAAATGT 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5