BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54855.1

Length=712
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950137 jgi|Araly1|950137|scaffold_802024.1                        797    0.0  


> Ahg950137 jgi|Araly1|950137|scaffold_802024.1
Length=489

 Score =  797 bits (431),  Expect = 0.0
 Identities = 471/490 (96%), Gaps = 3/490 (1%)
 Strand=Plus/Plus

Query  116  GATTAGACC-TTTTCGCATTCATGGATTCGAAGTTGAGAAATTTTGTGATGGGTCTGTTT  174
            ||||| ||| ||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct  1    GATTAAACCTTTTTCGCCTTCATGGATTCGAAGTTGAGGAATTTCGTGATGGGTCTGTTT  60

Query  175  GTGATGACTGCGATCTTGAATA-ATTCTGGTGTTGGCGCGTGGACTGGAGAGATTCGTGG  233
            |||||||||||||||||||| |  ||||||||| | |||||||||||| |||||||||||
Sbjct  61   GTGATGACTGCGATCTTGAA-AGGTTCTGGTGTCGACGCGTGGACTGGCGAGATTCGTGG  119

Query  234  TAGAGTTGTGTGTGATGTCTGTGCTGATTCTTCAATTGGACCAGAAGATCATGTTCTTGA  293
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  TAGAGTTGTGTGTGATGTCTGTGCTGATTCTTCAATTGGACCAGAAGATCATGTTCTTGA  179

Query  294  AGGAGCTGAGGTTGCGGTTCTGTGCATAACCAAATCTGGAGAAGTTGTGAACTACCAAGC  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  AGGAGCTGAGGTTGCGGTTCTGTGCATAACCAAATCTGGAGAAGTTGTGAACTACCAAGC  239

Query  354  TTTCACAAACTCAAAAGGTGTCTACACAGTTGCAGAGACAATGCCAGAGAGCGAACGTTG  413
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  240  TTTCACAAACTCAAAAGGTGTCTACACAGTTGCAGAGACAATGCCAGAGAGTGAACGTTG  299

Query  414  GGACGCTTGCCTTGCAAGACCCATCAGCAGCTTCCACACACCTTGCAATCGCCTACACCA  473
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  300  GGACGCTTGCCTTGCAAGACCCATCAGCAGCTTCCACACACCTTGCAACCGCCTACACCA  359

Query  474  AACCAATACCGGAATCAAATTCACTTATAACCGCCCTTCCGGTTTCTTTCATGCCGTGAA  533
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  AGCCAATACCGGAATCAAATTCACTTATAACCGCCCTTCCGGTTTCTTTCATGCCGTGAA  419

Query  534  ACCATTTGTGTATCGACCTCAATATGCACCTTCTTATTGCTGATTCAAAGACACCTTGTA  593
            |||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||| 
Sbjct  420  ACCATTTGTGTATCGACCCCAATATGCACCTTCTTATTGCTGATTCACAGACTCTTTGTT  479

Query  594  AAAGTCCTTG  603
            ||||||||||
Sbjct  480  AAAGTCCTTG  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26190443979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5