BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54860.1
Length=1797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495568 jgi|Araly1|495568|fgenesh2_kg.8__1384__AT5G54860.1 2538 0.0
> Ahg495568 jgi|Araly1|495568|fgenesh2_kg.8__1384__AT5G54860.1
Length=1634
Score = 2538 bits (1374), Expect = 0.0
Identities = 1534/1613 (95%), Gaps = 4/1613 (0%)
Strand=Plus/Plus
Query 14 AAGCAATAAATCTAGGAAATCAAAAATCGTTATAAGAAGAAACAGAGAGGTTGCGACGGA 73
|||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AAGCCATAAATCTGGGATATCAAAAATCGTTATAAGAAGAAACAGAGAGATTGCGACGGG 60
Query 74 GACAAGATTCTTCTGATGAACCGGAGAAGATAAGAAACGTGTTTTGTCTAATTTCTTGCG 133
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GACAAGA---TTCTGATGAACCGGAGAATCTAAGAAACGTGTTTTGTCTAATTTCTTGCG 117
Query 134 ATTA-AGGATGATACATTGGTTGAAGCAGCTGCGATCGGCGTTTGGCGTCGCGTTTCTGT 192
|||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 118 ATTATAAGATGATACATTGGTTAAAGCAGCTGCGATCGGCGTTTGGCGTCGCGTTTCTGT 177
Query 193 GGCTCGTTTGTCTCATTTACTTCACTCAGGGATTTAGATCGTTTGTGTGGACAGCTGTTT 252
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 178 GGCTCGTTTGTCTCATTTACTTTACTCAGGGATTTAGATCGTTCGTGTGGACAGCAGTTT 237
Query 253 CGTACCAGCTCAAAGACAGGCTACAGTTATCACCATCAGCTTCTCAGTTTGTCTTTTCGG 312
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 238 CTTACCAGCTCAAAGACAGGCTGCAATTATCACCATCAGCTTCTCAGTTTGTCTTTTCGG 297
Query 313 TTGCCTTTTTTCCATGGAGCATAAAACCATTATATGGAATCATTTCAGATTGTATACCAA 372
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 298 TTGCCTTTTTTCCATGGAGCATAAAACCATTATATGGAATCATATCAGATTGTATACCCA 357
Query 373 TTGGAGGGAAAAAGAGGACGCCGTATTTGGTGATATCGACTGTGCTCTCTCTTGTGCCAT 432
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 TTGGAGGGAAAAAGAGGACGCCGTATTTGGTGTTATCGACTGTGCTCTCTCTTGTGCCAT 417
Query 433 GGCTCGTGCTTGGTCTAGATTCAACCTCGAGAAGTTCAAGTCTCTATCTGATGATTTTCT 492
||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 418 GGCTCTTGCTTGGTCTAGATTCAACCTCGCGAAGTTCAAGTCTTTATCTGATGATTTTCT 477
Query 493 TGACTGTACAAAATCTAGGATCAGCTATGGCTGATGTTGTGATTGATGCTATGATAGCTG 552
||||||| ||||| || |||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 478 TGACTGTGCAAAACCTGGGATCAGCCATGGCTGATGTTGTGATAGATGCCATGATAGCTG 537
Query 553 AGGCAGTAAGACTTGAAAAGGCTTCGTTTGCTGGAGATCTTCAGTCTGTATCATGGTTTG 612
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 538 AAGCAGTAAGACTTGAAAAGGCCTCGTTTGCTGGAGATCTTCAGTCTGTCTCATGGTTTG 597
Query 613 CAATGGCTGTGGGTGGAGTATGCGGTAGTTTATTAGGAGGCTATGCGTTATCTAACTTGA 672
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 598 CAATGGCTGTGGGCGGAGTATGCGGTAGTTTATTAGGAGGCTATGCATTATCCAACTTGA 657
Query 673 AGATAGAAACAATATTCCTCCTTTTCACGGTACTACCAGCGTTACAATTACTATCATGTG 732
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 658 AGATAGAAACAATATTCCTCCTTTTCACGGTACTACCGGCGCTACAATTACTATCATGTG 717
Query 733 CTCTCGTCGAAGAAAGTCCTGCTAACAATGAACCATTGCCTGAGTTGTTGGATTCAAACG 792
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 CTCTCGTTGAAGAAATTCCTGCTAACAATGAACCATTGCCTGAGTTGTTGGATTCGAACG 777
Query 793 AGTTTGAAGAGAAAAGCTTGACGAGCAATGATAACTATCCAGATACGAGTAAGTCCAATA 852
||||||||||||||||| | ||||||||||||||||| |||||||| |||||| | ||
Sbjct 778 AGTTTGAAGAGAAAAGCAAGTTGAGCAATGATAACTATCGAGATACGAATAAGTCTAGTA 837
Query 853 CAAGAAGAAGGAAGGGGCAGAAGAAAGGTAAAAAAGGAGATTCCAACGGAAAGTCTGAGA 912
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 838 CAAGAAGAAGGAAGGGGCAGAAGAAAGGTAAAAAAGGAGCTTCCAATGGAAAGTCTGAGA 897
Query 913 CACAGAAGAAGCAATCGAAGTCTTTAGCTTCACAGTGGTTCCAGTCACTAAAAGCAGCCA 972
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 AACAGAAGAAGCAATCAAAGTCTTTAGCTTCACAGTGGTTCCAGTCACTGAAAGCAGCCA 957
Query 973 CTTTTGGTTTGGGCCGTGCGTTTAAGCAACCGATCATTTTGAGACCTATGGCATGGTTTT 1032
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 958 CTTTTGGTTTGGGCCGTGCGTTCAAGCAACCAATCATTTTGAGACCAATGGCGTGGTTTT 1017
Query 1033 TCATTGCACATATCACTGTGCCAAATCTCTCTACCGTCATGTTCTATTACCAAACCGAGG 1092
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 TCATTGCGCATATAACTGTGCCAAATCTCTCTACGGTCATGTTCTATTACCAAACCGAGG 1077
Query 1093 TCTTGCAATTAGACGCTGCTTTCCTAGGAACTGCCCGTGTTGTTGGTTGGTTAGGTCTCA 1152
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCTTGCAATTGGATGCTGCTTTCCTAGGAACTGCCCGTGTTGTTGGTTGGTTAGGTCTCA 1137
Query 1153 TGTTTGGAACCTTTATCTACAATCGCTATCTGCAAGATATGACTCTACGCAAGTCTCTCC 1212
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TGTTTGGAACCTTTATCTACAATCGCTATCTGCAAGATATGACTCTACGCAAGTCTCTCT 1197
Query 1213 TGTTTGCTCACATCGGGCTGTCTGTAACGATACTCCTAGATATGGTTCTAGTATCAAGAG 1272
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1198 TGTTTGCTCACATCGGGCTGTCTATAACGATACTCCTCGATATGGTTCTAGTATCAAGAG 1257
Query 1273 CTAATGTGGGCTACGGAGTTTCAGACAAGACAATGGTGCTCTTCGGATCAGCTCTAGGTG 1332
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CAAATGTGGGCTACGGAGTTTCAGACAAGACAATGGTGCTCTTCGGATCAGCTCTAGGTG 1317
Query 1333 ATGCCATCAATCAACTCAAATTCATGCCGTTCCTGATCTTGTCTGGTCGTCTATGTCCAC 1392
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1318 ATGCCATCAATCAACTCAAATTCATGCCGTTTCTGATTTTGTCTGGTCGTCTATGTCCAC 1377
Query 1393 CTGGGATTGAAGGAACACTGTTTGCGCTGTTTATGTCGATAAACAACCTAGGAAACACAG 1452
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 CTGGGATCGAAGGAACACTCTTTGCGCTGTTTATGTCGATAAACAACCTAGGAAACACAG 1437
Query 1453 TTGGATCGTTCATGGGAGCAGGATTGGCTTCACTTCTGGGAATATCGTCAGGGTCGTTTG 1512
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1438 TTGGGTCGTTCATGGGAGCAGGATTGGCTTCACTTCTGGGAATATCTTCGGGGTCATTTG 1497
Query 1513 ACAATATGTTTATGGGCTTAGCCATTCAAGTGTTTTGCACTTATATACCCGTTTTGTTTC 1572
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1498 AGAATATGTTTATGGGCTTAGCCATTCAAGTGTTTTGCACTTATATACCTGTTTTGTTTC 1557
Query 1573 TTTTCTTGATTCCCAAAGAAGCTACAGGAGTATCAGCATCATAGGGCAGAGAG 1625
|||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1558 TTTTCTTGATTCCCAAAGAAGCTACAGGAGTATCAGCATCATAGAGCAGAGAG 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67457823895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5