BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54870.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331828 jgi|Araly1|331828|fgenesh1_pm.C_scaffold_8001171 2680 0.0
Ahg481037 jgi|Araly1|481037|fgenesh2_kg.4__97__AT2G21720.1 52.8 8e-06
> Ahg331828 jgi|Araly1|331828|fgenesh1_pm.C_scaffold_8001171
Length=1590
Score = 2680 bits (1451), Expect = 0.0
Identities = 1548/1595 (97%), Gaps = 6/1595 (0%)
Strand=Plus/Plus
Query 15 ATGGCGTCTTCATCTTCCTCATCGTCTTCTTCTTCGCTTTCATCAATTCTCTCCATCGTC 74
|||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGTCTTCATCATCCTCATCG---TCTTCTTCGCTTTCCTCAATTCTCTCCATCGTC 57
Query 75 GTAGTACTGATTCTAATTGTATCAACCGCTGAATCAGTGAAATCACCGTTTCATCCTCGC 134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 ---GTACTGATTCTAATTGTATCAACCGCTGAATCAGTGAAATCACCGTTTCATCCTCGC 114
Query 135 GATTTGCTTCCGCATTTGCCCAGACAAGTCTCATGGCCGATTCTCAACTCTCTTTACGGC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 GATTTGCTTCCGCATTTGCCCAGACAAGTCTCATGGCCGATTCTCAACTCTCTTTACGGC 174
Query 195 GCCGCCGATCTGCTTCCTACTTTCATCGGAACAGCGAGTTCTGGGAACGATTCCGTTGAC 254
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 175 GCTGCCGATCTGCTTCCTACTTTCATCGGAACAGCGAGTTCAGGGAACGATTCCGTTGAC 234
Query 255 TGGAAAGGTGCTTGTTTCTTTGAGAACACCGCTTGGTTAGAGTTTCATAACAAGTCTGGT 314
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 235 TGGAAAGGGGCTTGTTTCTATGAGAACACGGCTTGGTTAGAGTTTCATAACAAGTCTGGT 294
Query 315 AGCGAGTTTGGTGGAGGCACTCTTCACATTAAGGCGGATAAGGCACATAGTTGGACATGT 374
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 295 AGCGAGTTTGGTGGAGGCACTCTTCACATTAAGGCGGATAAGGCGCATAGTTGGACTTGT 354
Query 375 ATGGATCTTTATGTATTTGCAACTCCATATCGTGTTACATGGACTTGGTACTTCATTTCA 434
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 355 ATGGATCTTTATGTATTTGCAACTCCATATCGTGTGACATGGACTTGGTACTTCATTTCA 414
Query 435 CGACAGCATACTGTGGAATTTCCGGAGTGGGATGGCAAAGCTGAGTATGAATATGTTAAG 494
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 415 CGACAGCATACTGTGGAATTTCCGGAGTGGGATGGCAGAGCTGAGTATGAATATGTTAAG 474
Query 495 AACAAAGGAGTTTCTATATTCCTTATGCACGCAGGGATGTTAGGAACACTTCAAGCACTG 554
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AACAAAGGAGTTTCGATATTCCTTATGCACGCAGGGATGTTAGGAACACTTCAAGCACTG 534
Query 555 TGGGATGTTTTTCCTCTCTTTAGCAATACTGGTTGGGGGGAGAGCTCTAATCTTGCGTTT 614
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 535 TGGGATGTTTTTCCTCTCTTTACCAATACTGGTTGGGGGGAGAGCTCTAATCTTGCATTT 594
Query 615 CTTGAGAAGCATATGGGAGCTAATTTTGAACCTCGTCCTGAACCATGGGTTACAAATGTT 674
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 CTCGAGAAGCATATGGGAGCTAATTTTGAACCTCGTCCTGAACCATGGGTTACAAATGTT 654
Query 675 ACAACTGATCAAATCCAGTCTGGTGACCTCTTAGCTATTTCAAAGATTCGTGGGCGGTGG 734
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 655 ACAACTGATCAAATTCAGTCTGGTGATCTCTTAGCTATTTCAAAGATTCGTGGGCGGTGG 714
Query 735 GGTGGTTTTGAGACTCTTGAGAAATGGGTGAGTGGGGCATATGCTGGTCATTCCGCCGTT 794
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 715 GGTGGTTTTGAGACCCTTGAGAAATGGGTGAGTGGGGCATATGCTGGTCATTCCGCTGTT 774
Query 795 GCCTTGAGAGACTCTGAAGGGAAACTTTGGGTTGGTGAGTCAGGAAATGAAAATGATAAG 854
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 775 TTCTTGAGAGACTCTGAAGGAAAACTTTGGGTTGGTGAGTCAGGAAATGAAAACGATAAG 834
Query 855 GGAGAAGATGTAATAGCAATCTTACCATGGGAGGAGTGGTGGGCATTTGAACAAACAAAG 914
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 GGAGAGGATGTAATAGCAATCTTACCATGGGAGGAGTGGTGGGCATTTGAACAAACAAAG 894
Query 915 GATGACTCGAATCCTCAGATTGCACTGCTACCTTTGCATCCCGATGTTCGTGCTAAATTT 974
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 895 GATGACTCGAATCCTCAGATCGCATTGCTACCTTTGCATCCTGATGTTCGTGCTAAATTC 954
Query 975 GATGTTGCTGCTGCTTGGAAATATGCTCGCAGCATGGAGGGTAAACCATATGGTTATCAC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GATGTTGCTGCTGCTTGGAAATATGCTCGCAGCATGGAGGGTAAACCATATGGTTATCAC 1014
Query 1035 AACTTGATTTTTAGTTGGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCC 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 AACTTGATTTTTAGTTGGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCC 1074
Query 1095 CATCTTGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTAAC 1154
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1075 CATCTTGTTGCATCTTTCATGACTGTCTGGAGCCAAATGCAGCCTGAGTATGCTGCTAAC 1134
Query 1155 ATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAGGGTCTTGATCTTTCTGATGTA 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 ATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAGGGTCTTGATCTTTCTGATGTA 1194
Query 1215 CTGGTAGAAGTAGAGAAGCGTGGATCCTCATTTGACAAATTACTGGCAGTACCTGAACTA 1274
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 1195 CTGGTCGAAGTAGAGAAGCGTGGATCCTCATTTGACAAACTACTGGCAGTACCTGAACAA 1254
Query 1275 GACGATTGGATATACAGCGATGGTAAATCAACCTCATGCATCGCTTTCATTCTCGAAATG 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GACGATTGGATATACAGCGATGGTAAATCAACCTCATGCATCGCTTTCATTCTCGAAATG 1314
Query 1335 TACAAAGAAGCTGGCCTATTCGGTCCACTTGCTAGTTCTATTCAAGTCACGGAATTCACG 1394
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1315 TACAAAGAAGCTGGCCTGTTCGGTCCACTTGCTAATTCTATTCAAGTCACGGAATTCACG 1374
Query 1395 ATAAAAGATGCTTACATGCTCAACTTTTTCGAGAACAACGCAAGTCGTCTTCCTACATGG 1454
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1375 ATCAAAGATGCTTACATGCTCAATTTTTTCGAGAACAATGCAAGTCGTCTTCCTACATGG 1434
Query 1455 TGCAATGACAATGACAGTGTGAAGCTTCCTTACTGTCAGATACTTGGGAAATACAGAATG 1514
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1435 TGCAATGACAATGACAATGTGAAGCTTCCTTATTGTCAGATACTTGGGAAATACAGAATG 1494
Query 1515 GAACTTCCTGGTTACAACACTATGGAACCATACTCGCACATGAACGAACAATGTCCAACT 1574
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1495 GAACTTCCTGGTTACAACACTATGGAACCATACTCGCACATGAATGAACAATGTCCAACT 1554
Query 1575 CTGCCTCCAAAGTACAACAGACCAGATAACTGCTA 1609
|| ||||||||||||||||||||||||||||||||
Sbjct 1555 CTACCTCCAAAGTACAACAGACCAGATAACTGCTA 1589
> Ahg481037 jgi|Araly1|481037|fgenesh2_kg.4__97__AT2G21720.1
Length=2117
Score = 52.8 bits (28), Expect = 8e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 22 CTTCATCTTCCTCATCGTCTTCTTCTTC 49
||||||||||||||||||||||||||||
Sbjct 203 CTTCATCTTCCTCATCGTCTTCTTCTTC 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5