BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54880.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950140 jgi|Araly1|950140|scaffold_802027.1 1685 0.0
> Ahg950140 jgi|Araly1|950140|scaffold_802027.1
Length=1251
Score = 1685 bits (912), Expect = 0.0
Identities = 1148/1259 (91%), Gaps = 28/1259 (2%)
Strand=Plus/Plus
Query 1 GAAGCTTTTGGATTTCTAATGTGTGTGAATCGTGATGTTGTCATCAGGACAGATGATGGG 60
||||| ||| ||||||||| |||| | || |||| || ||||||||||||||||||
Sbjct 3 GAAGC-TTTCGATTTCTAA-ATGTGCG----GT-ATGTCGTTATCAGGACAGATGATGGG 55
Query 61 CCATGTCGTGGCCCGAACTCAGATGATCTTGTCTCGAAGTAACTTCGCCGATTGTATACG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CCATGTCGTGGCCCGAACTCAGATGATCTTGTCTCGAAGTAACTTCGCCGATTGTATACG 115
Query 121 GTGTCAGGGCGTGAGAGTTTCAAAAACCCTAAAAATGGGGACAAAGCG---ACCCACTTG 177
||||||||| ||||||||||| |||||||||| ||||||||| ||||| |||||||||
Sbjct 116 GTGTCAGGGGGTGAGAGTTTCCAAAACCCTAACAATGGGGACTAAGCGGCGACCCACTTG 175
Query 178 CCCTTCTTGCGATAAACCTAGCCAGCTCTGTCTCTGCAAGAAGATGAGATCTCCATGTTT 237
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 176 CCCTTCTTGCGATAAACCTAGCCAGCTCTGCCTCTGCAAGAAGATGCGATCTCCATGTTT 235
Query 238 TGATAATCAGGTGAGTATTACTATTCTTCAGCATAGTCTCGAGAGAAAACACGCGCTAAA 297
||||||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||
Sbjct 236 CGATAATCAGGTTAGTGTTACTATTCTTCAGCACAGTCTCGAGAGAAAACACGCACTTAA 295
Query 298 TTCTACTCGAATCGCTAGATTAGGGCTTAAGAATGTTGGTGTGACTACTGTTTTCGATGT 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTCAACTCGAATCGCTAGATTAGGGCTTAAGAATGTTGGTGTGACTACTGTTTTCGATGT 355
Query 358 TCATGATGAGGCAGAGTTCTTAATCAGGGTTATTGGATCGGGTTGCAGCAAGATTGACAC 417
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||
Sbjct 356 ACATGATGAGGCAGAGTTCGTAATCAGGGTCATTGGATCGGGTTGCAGCAAGATTGGCAC 415
Query 418 GAATCATTTGGATTCTGAGTATAGGGTAGAGAATGTTGCTTCTTTGGAACTTGATGATAG 477
|||||| | |||| ||| |||||| |||||||||||||||||||||| |||||||| ||
Sbjct 416 GAATCAGTCAGATTTTGATTATAGGCTAGAGAATGTTGCTTCTTTGGAGCTTGATGAGAG 475
Query 478 CTTTAAGTTAGGTAGTAGTGGCAATGTGGAGAACTTAGAATCTGAGAAGAATGTGGTGCT 537
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 476 CTTTAAGTTAGGTATTAATGGAAATGTGGAGAACTTAGAATCTGAGAAGAATGTGGTGCT 535
Query 538 TGTTGATCATGGAAGCTTGGAAATTGCTGAAAGTTTGAATCTTTCTCAACATTTGAG-TG 596
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||
Sbjct 536 TGTTGATCATGGAAGCTTGAAAATTGCTGAAAGTTTGAAGCTTTCTCAACATTC-AGGTG 594
Query 597 AAATTTCTTATCGGGATTCGCGGGTTAGGGATAAGATAGGTTCTTATGAAGAA----GAT 652
|||| |||| |||||||| |||||||| |||||||||||||||| ||||||| |||
Sbjct 595 AAATGTCTTGTCGGGATTTGCGGGTTACAGATAAGATAGGTTCTTGTGAAGAAATTAGAT 654
Query 653 --------TTGATAAAAATCTGTATGAAGAAACATGGTGTCATCAGCAATGTCTCACACT 704
||||||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 655 CAGAAGAGTTGATAAGAATCTGTATGAAGAAACAAGGTATCATCAGCAATGTCTCACACT 714
Query 705 CTTTGATGCTTGAAACCAATGTGAAGG-TTCTTAGTTTTGATCATATATTGGCTTCTCCT 763
|||||||||||||||||| |||| ||| |||| ||||||||||||||||||| |||||||
Sbjct 715 CTTTGATGCTTGAAACCAGTGTGGAGGATTCT-AGTTTTGATCATATATTGGGTTCTCCT 773
Query 764 GCAGCCATGGATGTCTTGGCAAAAGGTTTTATGGTAACAAAGTTTTCAGAAGGAAAGCAA 823
|| || |||||||||||||||||||| ||| ||||||||||||| |||||||| |||| |
Sbjct 774 GCCGCGATGGATGTCTTGGCAAAAGGATTTGTGGTAACAAAGTTCTCAGAAGGGAAGCGA 833
Query 824 GAGTTTGAGCTCGAGGTTCCTCCTGGATCAGCTTTGTTGTTCCCGAGCGAAGAATCGGTA 883
|| ||||| || |||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 834 GAATTTGAACTTGAGGTTCCTCCTGGATCAGCACTATTGTTCCCGAGCGAAAAATCGGTG 893
Query 884 AAGATCAATTATCTTAAAGAGAAAGAAGAGTTAAAAGTAAGGAATCTGATTGTTCTTGAT 943
||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 894 AAGATCAATGATCTTAAAGAGAAAGAAGAGTTGAAGGTAAGGAATCTGCTTGTTCTTGAT 953
Query 944 GGGACTTGGTCGAAGGCTAGAAGAATATACCTTGAGAATCCATGGCTAAAGCTTTTACGT 1003
||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 954 GGGACATGGTCAAAGGCAAGAAGAATTTACCTTGAGAATCCATGGCTAAAGCTTTTACGT 1013
Query 1004 TGCCATGTGAAGCTAGAAATAGAAGGTACAAGTTTATACAAAGAAGTACGACGGCAGCCA 1063
|||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||||||||
Sbjct 1014 TGCCATGTGAAGCTAGAAATGGAAGGTACAAGTATATACAAAGAAGTTCGAAGGCAGCCA 1073
Query 1064 AGAGCGGGATGTTTATCCACGATAGAGAGTATTGTATACGCGATGAAGGAGATCGGTGAA 1123
||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 1074 AGAGCGGGATGTTTATCGACAATAGAGAGTATTGTATACACGATGAAGGAGATCGGTGAA 1133
Query 1124 GATCCTGAAGGTTTAGATAATATGTTGAATGTTTTTGAATCCATGGTTGAAGATCAACGA 1183
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1134 GATCCCGAAGGTTTAGATAATATGTTGAATGTCTTTGAATCCATGGTTGAAGATCAAAGA 1193
Query 1184 AGATGTAAAGATGAGAACTTT-AACAAGATTATCTGAAAGACAAAATTACTCTGCTGTT 1241
||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||
Sbjct 1194 AGATGTAAAGATGAGAACTTTGAA-AAGATTATCTGAAAGACAAAATGACTTTGCTGTT 1251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5