BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54890.1
Length=1333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331830 jgi|Araly1|331830|fgenesh1_pm.C_scaffold_8001173 1572 0.0
> Ahg331830 jgi|Araly1|331830|fgenesh1_pm.C_scaffold_8001173
Length=1089
Score = 1572 bits (851), Expect = 0.0
Identities = 1017/1094 (93%), Gaps = 23/1094 (2%)
Strand=Plus/Plus
Query 22 ATGCTTTCAATTCGCAGAAGCTTA---ACTCTAGCAAAAGAGCCAAAAGATTTGTTTTTG 78
||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 1 ATGCTTTCAATACGCAGAAGCTTATTGACTCTAGCCAAAGAGCAAAAAGATTTGTTTTTG 60
Query 79 TTTTTGTGTAATCTCCGAGCTCGATGTGTATCTACAGATGACTATGATCCACCATTTTCG 138
|| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 61 TTGTTGTGTAATCTCCGAGCTCGATTTGTATCTACAGATAACTATGATCCACCATTTTCG 120
Query 139 CCTCTCTCTAAACCCACTAAACCTCCAAaagagaagaagaagcagaagacgaagaagcaa 198
|||||||| ||||||||||||||||||||||||| |||| | ||| || ||||||||||
Sbjct 121 CCTCTCTCAAAACCCACTAAACCTCCAAAAGAGACGAAG-A--AGACGAAGAAGAAGCAA 177
Query 199 gaCCAGTCGTCGGAGCTGGTAAATGACCTGAAGATTCCAGTGATTTCAGACCTCCCTTTC 258
|| ||||||| | || | | ||||||||||| |||||||||||||| ||||||
Sbjct 178 GATCAGTCGT-----C-GG---A-G--CTGAAGATTCCGGTGATTTCAGACCTTCCTTTC 225
Query 259 GATTTTAGGTATTCGTATTCAGAAACTAACCCGGAAATTGAACCGATTGGATTCCGTGAA 318
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 226 GATTTTAGGTATTCGTATTCAGAAACCAACCCGGAAATTGAACCAATTGGATTCCGTGAA 285
Query 319 CCGAAACGGTTCTCTCCATTTGGACCGGGTCGATTGGACCGGAAATGGACTGGGACTACC 378
||||||||||| ||||| |||||||||||||||||||||||||||||||| || ||| ||
Sbjct 286 CCGAAACGGTTTTCTCCTTTTGGACCGGGTCGATTGGACCGGAAATGGACCGGTACTTCC 345
Query 379 GCACTGGCGTCGCCGGAGATTGATCAGAGTCAATGGGTGGAGGAGAGAGCAAGAGTTCTC 438
||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 346 GCACTAGCTTCGCCGGAGATTGATCAGAGTCAATGGGTGGAGGAGAGAACAAGAGTTCTC 405
Query 439 GGCGAGACTTTGACAGAGGATGAAGTTACAGAGCTTATTGAACGGTATCGGCATAGTGAC 498
|||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 406 GGCGAGCCTTTGACAGAGGAAGAAGTTACAGAGCTTGTTGAACGGTATCGGCATAGTGAT 465
Query 499 TGTACACGACAGATTAATCTCGGGAAAGGTGGTGTGACTCACAATATGATAGATGATATT 558
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TGTTCACGACAGATTAATCTCGGGAAAGGTGGTGTGACTCACAATATGATAGATGATATT 525
Query 559 CATAACCATTGGAAGAAAGCTGAGGCAGTGAGGATCAAATGCTTGGGAGTACCAACTCTT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 CATAACCATTGGAAGAAAGCTGAGGCAGTGAGGATCAAATGCTTGGGAGTACCAACTCTT 585
Query 619 GACATGGACAACATATGTTTCCACCTCGAGGAAAAATCCGGTGGAAAGATTGTATACAGA 678
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 586 GACATGGACAACATATGTTTCCACCTCGAGGAAAAATCTGGTGGAAAGATTGTATACAGA 645
Query 679 AACATAAACATTCTAGTTTTGTACCGGGGAAGGAATTATGATCCGAAGAGTCGTCCCATC 738
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 646 CACATAAACATTCTAGTTTTGTACCGGGGAAGGAATTATGATCCGAAGAATCGTCCCATC 705
Query 739 ATTCCACTCATGTTATGGAAGCCTCATCCGCCAATATACCCAAGACTTGTAAAGAATGTG 798
|| ||||||||||| ||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 706 ATACCACTCATGTTGTGGAAGCCTTATCCACCGATATACCCAAGACTTGTAAAGAATGTC 765
Query 799 GCTGATGGGTTAGA-ATTTGAAGAGACCAAGGAGATGAGAAATCGTGGGCTTCATTCTCC 857
|| ||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 766 GCCGATGGGTTA-ACATTTGAAGAGACCAAAGAGATGAGAAATCGCGGGCTTCATTCTCC 824
Query 858 TGCCTTAATGAAACTTACTAGGAATGGTGTTTATGTTAATGTCGTTGGAAGAGTGAGGGA 917
|||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct 825 TGCCTTAATGAAACTTACAAGGAATGGTGTCTATGTTAATGTTGTGGGAAGAGTGAGGGA 884
Query 918 AGAGTTTGAAACAGAAGAGATTGTGAGACTAGATTGCACTCATGTTGGGATGAGTGACTG 977
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GGAGTTTGAAACAGAAGAGATTGTGAGACTAGATTGCACTCATGTTGGGATGAGTGACTG 944
Query 978 CAAACGAATTGGTGTGAAACTAAAGGAGATGGTTCCATGTGTTCCCATATTGTTCAAAGA 1037
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 945 CAAACGAATCGGTGTGAAACTAAAGGATTTGGTTCCATGTGTTCCCATATTGTTCAAAGA 1004
Query 1038 TGAGCAGATCATACTCTGGAGAGGGAAGAGGACTGGTGAAGAAGAGCTTGTT--ACTCTA 1095
|||||| ||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 1005 TGAGCAAATCATACTCTGGAGAGGGAAGAGGAATGGTGAAGAAGAGCTTTTTTCACTCTG 1064
Query 1096 TGAAT-CTTTGATC 1108
|||| |||| |||
Sbjct 1065 TGAAAACTTTAATC 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49864775436
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5