BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54900.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495572 jgi|Araly1|495572|fgenesh2_kg.8__1388__AT5G54900.1 1803 0.0
Ahg945361 jgi|Araly1|945361|scaffold_701590.1 688 0.0
> Ahg495572 jgi|Araly1|495572|fgenesh2_kg.8__1388__AT5G54900.1
Length=1411
Score = 1803 bits (976), Expect = 0.0
Identities = 1288/1426 (90%), Gaps = 72/1426 (5%)
Strand=Plus/Plus
Query 9 Gtttttt--tGTCCGTCGTAGTGATGCAGCAACCACCGTCAAACGCCGCCGGAGCTGGAC 66
||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1 GTTTTTTAAT-TCCGTCGTAGTGATGCAGCACCCACCGTCAAACGCCGCCGGAGCAGGAC 59
Query 67 AGATACCATCAGGACAACAGCATTTGTGG---ATGATG----A--TGC-A-A-cagcagc 114
| |||||||| ||||| ||||| |||||| |||||| | || | | |||||||
Sbjct 60 AAATACCATCGGGACAGCAGCAGTTGTGGATAATGATGCAACAGCAGCAACAGCAGCAGC 119
Query 115 agcagcagcagcag-A--TGC--A-GTTGTCTGCGGCGCCACTAGGTCAACATCAGTACG 168
|||||||||||||| | || | | |||||||||| |||||||||||||||||||||
Sbjct 120 AGCAGCAGCAGCAGCAGCAGCAGAGGCAGTCTGCGGCGACACTAGGTCAACATCAGTACG 179
Query 169 GTATTGGATCTCAGAATCCAGGATCCGCTAGCGATGTTAAGTCGTTGTGGATCGGAGACT 228
|| |||||||||||||||||||||||| | | || || |||||||||||||||||||
Sbjct 180 GTGTTGGATCTCAGAATCCAGGATCCG--A--G--GTCAAATCGTTGTGGATCGGAGACT 233
Query 229 TGCAGCAATGGATGGACGAGAACTACATCATGAGCGTCTTTGCTCAGTCTGGCGAGGCTA 288
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 234 TGCAGCAATGGATGGACGAGAACTACATCATGAGCGTCTTTAATCAGTCTGGCGAGGCT- 292
Query 289 C-ATCAGCTAAAGTCATTCGTAATAAGCTGACGGGACAATCTGAAGGTTATGGATTCATT 347
| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 293 CAATCGGCTAAAGTCATTCGTAATAAGCAGACGGGACAATCTGAAGGTTATGGATTCATT 352
Query 348 GAGTTCGTCAGCCACTCTGTAGCAGAGCGGGTTTTGCAGACTTACAATGGTGCTCCCATG 407
||||| |||| ||| |||||||| || |||||||||||||||||||||||||||| |||
Sbjct 353 GAGTTTGTCAACCATTCTGTAGCTGAACGGGTTTTGCAGACTTACAATGGTGCTCAAATG 412
Query 408 CCGAGCACTGAACAGACGTTTAGGCTCAACTGGGCTCAGGCTGGGGCTGGAGAGAAACGA 467
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 413 CCTAGCACTGAACAGACGTTTAGGCTCAACTGGGCTCAGGCCGGGGCTGGAGAGAAACGA 472
Query 468 TTCCAGACTGAAGGGCCTGACCATACCATTTTCGTAGGTGACTTGGCACCTGAGGTGACT 527
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 473 CACCAGACTGAAGGGCCTGACCATACAATTTTCGTAGGCGACTTGGCACCTGAGGTGACT 532
Query 528 GACTATATGCTCTCGGACACATTCAAGAATGTGTATGGGTCTGTCAAAGGGGCTAAAGTT 587
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 533 GACTACATGCTCTCGGATACATTCAAGAATGTGTATGGGTCTGTCAAGGGGGCTAAAGTT 592
Query 588 GTGCTTGACAGGACCACTGGAAGGTCCAAGGGGTATGGGTTTGTTAGGTTTGCGGATGAA 647
||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 593 GTGGTTGACAGGACCACTGGAAGGTCCAAGGGCTATGGGTTTGTCAGGTTTGCGGACGAA 652
Query 648 AATGAGCAGATGCGTGCCATGACTGAAATGAATGGTCAATACTGCTCGACAAGGCCTATG 707
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 653 AATGAGCAGATGCGTGCCATGACCGAAATGAATGGTCAATACTGCTCGACCAGGCCTATG 712
Query 708 CGTATTGGTCCGGCTGCCAATAAGAATGCTCTTCCGATGCAACCAGCTATGTATCAAAAC 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 CGTATTGGTCCGGCTGCCAATAAGAATGCTCTTCCGATGCAACCAGCTATGTATCAAAAC 772
Query 768 ACTCAAGGAGCAAATGCTGGAGATAATGATCCTAATAACACAACAATTTTTGTTGGAGGT 827
|||||||||| ||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 773 ACTCAAGGAGGAAATGCTGGCGATAGCGATCCAAATAACACAACAATTTTTGTTGGAGGT 832
Query 828 CTGGATGCTAATGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGTGAACTT 887
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 CTGGATGCTAATGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAATTTGGGGAACTT 892
Query 888 CTTCATGTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAAGGCG 947
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 893 CTTCATGTAAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATGCCAACAGGGCG 952
Query 948 TCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGGACAAAGCATCCGT 1007
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 953 ACTGCAGAGCATGCACTTTCGGTACTGAATGGAACACAATTAGGTGGACAAAGCATCCGT 1012
Query 1008 CTTTCGTGGGGACGTAGTCCAAACAAGCAGTCTGATCAAGCGCAATGGAACGGTGGTGGA 1067
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1013 CTTTCGTGGGGACGTAGTCCAAACAAGCAGCCTGATCAAGCGCAATGGAACGGTGGTGGA 1072
Query 1068 TACTATGGATACCCTCCACAGCCACAGGGCGGCTATG--------G-TTATGCAGCTCAA 1118
||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1073 TACTATGGATACCCTCCACAGCCACAGGGCGGCTATGAACCATATGGTTATGCAGCTCAA 1132
Query 1119 CCACCAACTCAAGACCCTAATGCGTACTATGGTGGTTACACTGGCTATGGCAACTATCAG 1178
|| || ||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1133 CCT--AA-TCAGGATCCTAATGCGTACTATGGCGGTTACACTGGCTATGGCAACTATCAG 1189
Query 1179 CAGCAACGTCAG-T--------------GA--AA-CATCAACATCAGCTATTTCTACCAA 1220
|||||||||||| | || || |||||||||||||| ||||||||||
Sbjct 1190 CAGCAACGTCAGGTAACTCAATTACACTGATGAAACATCAACATCAGCTTTTTCTACCAA 1249
Query 1221 TGTCTTGGAACAAAAGATGAG-CGATTGTGTCTTATTAGGACTTCTAGATTA-AA-AGTG 1277
||||||||||||||||||| | | ||| ||||| ||||||||| |||||| || ||||
Sbjct 1250 TGTCTTGGAACAAAAGATGTGTC-ATTAAGTCTTTTTAGGACTTTTAGATTTTAAGAGTG 1308
Query 1278 CTCTCTTTTTG-T---T-TGAGTTTTATTTTGCAAATGAGTCGATCTTGAATTTGCTATG 1332
|||||||||| | | ||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1309 CTCTCTTTTTACTAGATGTGAGTTTTATTTTGCAAATGAGT--ATCTTGGATTTGCTATG 1366
Query 1333 AACAAAGTGTTT-ACTGAATGTTGAAACTTTATTCTGTTGTTTTTT 1377
|||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 1367 AACAAATTGTTGGA-TGAATGTTGAAACTTTATTCTGTTGTTTTTT 1411
> Ahg945361 jgi|Araly1|945361|scaffold_701590.1
Length=1297
Score = 688 bits (372), Expect = 0.0
Identities = 711/871 (82%), Gaps = 38/871 (4%)
Strand=Plus/Plus
Query 173 TGGATCTCAGAATCCAGGATCCGCTAGCGATG-TTAAGTCGTTGTGGATCGGAGACTTGC 231
||||||||||||||||||||| ||| | || | | |||| |||||||||| |||||||
Sbjct 227 TGGATCTCAGAATCCAGGATCAGCTGGTGA-GATCCGGTCGCTGTGGATCGGTGACTTGC 285
Query 232 AGCAATGGATGGACGAGAACTA-CATCATGAGCGTCTTTGCTCAGT-CTGGCGAGGCTAC 289
||| ||||||||| |||||||| | |||||||| ||||||||| | ||||||| |||||
Sbjct 286 AGCCATGGATGGAGGAGAACTATC-TCATGAGCATCTTTGCTC-TTACTGGCGATGCTAC 343
Query 290 ATCAGCTAAAGTCATTCGTAATAAGCTGACG-GGACAATCTGAAGGTTATGGATTCATTG 348
|||||||||||| || || ||||| | || | ||| | || ||||||||||| || ||||
Sbjct 344 ATCAGCTAAAGTTATCCGCAATAAACAGA-GTGGATATTCAGAAGGTTATGGGTTTATTG 402
Query 349 AGTTCGTCAGCCACT-CTGTAGCAGAGCGGGTTTTGCAGACTTACAATGGTGCTCCCATG 407
|||| || | ||| | || ||| ||| || |||| ||| |||||||||||||| | |||
Sbjct 403 AGTTTGTGAACCA-TGCTACAGCTGAGAGGATTTTACAGGCTTACAATGGTGCTACAATG 461
Query 408 CCGAGCACTGAACAGACGTTTAGGCTCAACTGGGCTCAGGC-TGGGGCTGGAGAGAAACG 466
|| | || ||| ||| | || ||| | ||||||||||| || ||| |||||||||| |||
Sbjct 462 CCCAACAGTGACCAGGCCTTCAGGTTGAACTGGGCTCA-GCTTGGAGCTGGAGAGAGACG 520
Query 467 ATTCCAGACTGAAGGGCCTGACCATACCATTTTCGTAGGTGACTTGGCACCTGAGGTGAC 526
|||| ||||||||||||| || || |||| || || |||||||| ||||| || ||
Sbjct 521 ---CCAGGCTGAAGGGCCTGAGCACACGGTTTTTGTTGGAGACTTGGCGCCTGATGTTAC 577
Query 527 TGACTATATGCTCT-CGGACACATTCAAGAATGTGTATGGGTCTGTCAAAGGG-GCTAAA 584
||| | ||||| | | || || || ||| ||||||| |||||| ||||| ||||||
Sbjct 578 GGACCACATGCT-TACTGAAACGTTTAAGGCTGTGTATTCCTCTGTC-AAGGGAGCTAAA 635
Query 585 GTTGTG-CTTGACAGGACCACTGGAAGGTCCAAGGGGTATGGGTTTGTTAGGTTTGCGGA 643
|||||| | ||| ||||| |||||| |||||||||| ||||| ||||| ||||||| |||
Sbjct 636 GTTGTGAC-TGATAGGACTACTGGACGGTCCAAGGGATATGGATTTGTCAGGTTTGGGGA 694
Query 644 TGAAAATGAGCAGATGCGTGCCATGACTGAAATGAATGGTCAATACTGCTCGA-CAAGGC 702
||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 695 TGAAAGCGAGCAGATTCGTGCCATGACTGAAATGAATGGTCAATACTGCTC-ATCAAGGC 753
Query 703 CTATGCGTATTGGTCCGGCTGCCAATAAGAATGC-TCTTCCGATGCAACCAGCTATG-TA 760
||||||||| |||||| |||||||| ||||| || |||| | |||||||||||| | ||
Sbjct 754 CTATGCGTACTGGTCCAGCTGCCAACAAGAA-GCCTCTTACAATGCAACCAGCT-TCATA 811
Query 761 TCAAAACACTCAAGGAG-CAAATGCTGGAGATAA-TGATCCTAA-TAACACAACAATTTT 817
||| |||||||||||| | || | | ||| || |||||| || |||||||||||||||
Sbjct 812 TCAGAACACTCAAGGAAACCAA-G--G-AGA-AAGTGATCC-AACTAACACAACAATTTT 865
Query 818 TGTTGGAGGTCTGGATGCTAA-TGTTACAGACGATGAATTAAAGTCAATTTTTGGTCAAT 876
||| |||| | ||||| | || ||| ||||| ||||| || ||||| ||||||||||||
Sbjct 866 TGTCGGAGCTTTGGAT-CAAAGTGTAACAGAAGATGATTTGAAGTCGGTTTTTGGTCAAT 924
Query 877 TTGGTGAACTTCTTCATGTGAAAATACCTCCAGGAAAACGTTGTGGATTCGTTCAATATG 936
|||||||||| |||||||||||||||| ||||||||||||| ||||| |||||||| |
Sbjct 925 TTGGTGAACTAGTTCATGTGAAAATACCAGCAGGAAAACGTTGCGGATTTGTTCAATACG 984
Query 937 CCAACAAGGCGTCTGCAGAGCATGCACTTTCGGTGCTGAATGGAACACAATTAGGTGGAC 996
|||| | ||| | ||||||||| || || || || |||| ||||||||| | |||||||
Sbjct 985 CCAATAGGGCATGTGCAGAGCAAGCCCTCTCCTTGTTGAACGGAACACAACTGGGTGGAC 1044
Query 997 AAAGCATCCGTCTTTCGTGGGGACGTAGTCC 1027
||||||| |||||||| ||||| || |||||
Sbjct 1045 AAAGCATTCGTCTTTCATGGGGTCGCAGTCC 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5