BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54920.2
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495575 jgi|Araly1|495575|fgenesh2_kg.8__1391__AT5G54920.2 1847 0.0
Ahg492097 jgi|Araly1|492097|fgenesh2_kg.7__1530__AT4G26990.1 178 1e-43
> Ahg495575 jgi|Araly1|495575|fgenesh2_kg.8__1391__AT5G54920.2
Length=1895
Score = 1847 bits (1000), Expect = 0.0
Identities = 1182/1269 (93%), Gaps = 16/1269 (1%)
Strand=Plus/Plus
Query 499 ATTCTGGCAAGAACAGAAGGGGCACTAATCGTAGAAGGAATTCCGCGAAACGTGAAAATT 558
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 517 ATTCTGGCAAGAACAGAAGGGGCACTAATCGTAGAAGGAATTCCGCAAAACGTGAAAATC 576
Query 559 GTTTGGAAAGTAAAGCAAGAACCTTGACATCT-GG--GG---A--G-ACCGCAGGTGCCA 609
||||||||| |||||||||||||||| ||||| || || | | |||||||||||||
Sbjct 577 GTTTGGAAAATAAAGCAAGAACCTTGGCATCTGGGAAGGTAAACGGAACCGCAGGTGCCA 636
Query 610 TGAAAGAGCCA-GGGAGAAGAGATGAGGTTGGTATTTTACAGAACAAATATCATCCTAGC 668
||||| ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 637 TGAAAAAGCCAGGGGA-AAGAGATGAGGTTGGTATTTTACAGAACAAACATCATCCTAGC 695
Query 669 TCACTGAACCATCAACGACAGGCAGGAGTCCGCATTTTGAAGAATAGCaaaaaaaTTACT 728
|||||||||||||||||||||||||||| ||||||||||||| | || ||||||| ||||
Sbjct 696 TCACTGAACCATCAACGACAGGCAGGAGCCCGCATTTTGAAGCACAGTAAAAAAAATACT 755
Query 729 GATGTTCATCAGGAGGATAACGTTGAAGCCAGAAGCTCAAGTTGTAGCTTGGACAACATG 788
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GACGTTCATCAGGAGGATAACGTTGAAGCCAGAAGCTCAAGTTGTAGCTTGGACAACATG 815
Query 789 TCTGAACGTGTAAAGCCGATAGAACAAGAGAA-A--ATGCCGGAACCTTCTAGTAATGGT 845
|||||||||||||| ||||| | ||||||||| | ||||||||||||||||||||||||
Sbjct 816 TCTGAACGTGTAAAACCGATGGGACAAGAGAATACTATGCCGGAACCTTCTAGTAATGGT 875
Query 846 TTTCACGATGCTACGGAGAGACCCTCGTCAACTGAAAATTCTTCATCACAGAGCACTACT 905
|||||||||||| | || || ||||||||||||||||||||||||||||||||||| |||
Sbjct 876 TTTCACGATGCTGCAGAAAGGCCCTCGTCAACTGAAAATTCTTCATCACAGAGCACAACT 935
Query 906 GTGGATGAAAACTCAGAAGTGAGTCTGGTTTTGGTGGTATCTACAAATAGCTTACCACCT 965
||| ||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||
Sbjct 936 CTGGTTGAAAACTCAGAAATGAGTCGGGTTTTGGTGGCATCTACAAATAGGTTACCACCT 995
Query 966 ACGCAGGCAACAGACCCTGA-CAAGAAGGCTAAGGAGTTTAAACTGAATCCAGGAGCAAA 1024
| ||||||||| |||||||| ||| ||||||||||||||||| |||||||||||||| ||
Sbjct 996 ATGCAGGCAACTGACCCTGACCAA-AAGGCTAAGGAGTTTAAGCTGAATCCAGGAGCGAA 1054
Query 1025 GACTTTTTCCCCATCTCTTGCAAAACGTCTTACATCAGCTCATGCCGGTATGACGCCTGT 1084
|||||| || ||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1055 GACTTTCTCTCCATCTCTTGCAAAACGTCTTACGTCAGCTCATGATGGTATGACGCCTGT 1114
Query 1085 TGTTGCGAATATGGGTTATGTGCCAAGCAATACTCCTATGTTACCAGTTCCAGAAGCTGT 1144
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1115 TGTTGCAAATATGGGTTATGTGCCAAGCAATACTCCTATGTTACCAGTTCCTGAAGTTGT 1174
Query 1145 TCAACCAGAAATTGGAATCAGCCCTTTCTTGTCTCATGCATCTTCACCTTCCAAGTTTGT 1204
|||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1175 TCAACCGGAAATTGGAGTCAGCCCTTTGTTGTCTCATGCATCTTCACCTTCCAAGTTTGT 1234
Query 1205 TCCGTACACTAATTTGGCTACTGGAAATGCTGGTGGTGGATCTCATTTTCCCCAACATAT 1264
|||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 1235 TCCGTACACTAATTTGGCTACTGGGAATACTGGTGGTGGATCTCATTTTCCTCAACATAT 1294
Query 1265 GGTTGGACCAACTATTAACAGGGGACAGCCACATAGATTCACCACTCAGTACCATTCTGT 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 GGTTGGACCAACTATTAACAGGGGACAGCCACATAGATTCACCACTCAGTACCATTCTGT 1354
Query 1325 TCAACCCACACCAATGCTTGTAAATCCCAATCCTCAGGTGATGGTCGGGAGATCAGGACA 1384
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1355 TCAAGCCACACCAATGTTTGTAAATCCCAATCCTCAGGTGATGGTCGGGAGATCGGGACA 1414
Query 1385 GCTTATGTATATGCAACCAATTTCTCAGGATTTGGTTCAAGGAGCACCACATAACTCACA 1444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GCTTATGTATATGCAACCAATTTCTCAGGATTTGGTTCAAGGAGCACCACATAACTCACA 1474
Query 1445 TTTGCCTCCTCGTCCTCTCTTTACTCCCCAACAGTTTCAGTATCCAAAGCATCAGAGTCT 1504
|||||||||||||||||||||| ||||||||||| |||| |||||||||||||| |||||
Sbjct 1475 TTTGCCTCCTCGTCCTCTCTTTGCTCCCCAACAGCTTCAATATCCAAAGCATCAAAGTCT 1534
Query 1505 AATCGCAACTGGTCAACCGATGCATCTATATGCTCCACAACCATTTGCAGCCAATGGACA 1564
|||||||||||||||||||||||| || || ||||||||||| |||||||||||||||||
Sbjct 1535 AATCGCAACTGGTCAACCGATGCAGCTCTACGCTCCACAACCGTTTGCAGCCAATGGACA 1594
Query 1565 TCAGCCTTACACAGTCATGCCTACCGATATTCCGGTTATGCAGTCACCTTTTCCCATTAA 1624
||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||||
Sbjct 1595 TCAGCCTTACACAATCATGCCTACTGATATTCCAGTTATGCAGCCACCTTTTCCCATTAA 1654
Query 1625 CCGGGCCATGCCAATTCCGGTTCCTAATGGTTTCTATGGCACAAAGTTTCTATAGAAAGT 1684
| ||| ||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 1655 CAGGGTCATACCAATTCCGGTGCCTAATGGTTTCTATGGCACAAAGTTTCAATAGGAAGT 1714
Query 1685 CTTGTTTTTCATCTTCATTACCTTATTATTTGCCTCCCAGCTTAATAAGTTTTTGATACA 1744
|||||||||||||||||||||||||| | || ||||||||| |||||||||||||| ||
Sbjct 1715 CTTGTTTTTCATCTTCATTACCTTATCACTTACCTCCCAGCACAATAAGTTTTTGATCCA 1774
Query 1745 TAGTTAAAA 1753
|||||||||
Sbjct 1775 TAGTTAAAA 1783
Score = 660 bits (357), Expect = 0.0
Identities = 446/488 (91%), Gaps = 9/488 (2%)
Strand=Plus/Plus
Query 10 TTTGTCTTCGTCTTCTTTTGTTGTGAACTTGC-GATACATATATATATAGATGCGAGTAC 68
||||||||||||||||||||||| | || | | | ||||||||| ||| ||||||||||
Sbjct 1 TTTGTCTTCGTCTTCTTTTGTTGCG-ACATACACACACATATATACATACATGCGAGTAC 59
Query 69 ACCGGACTGTGAAATTT-TGGA-ACGAATTGATTTGATTTGAATATGGCAATCGCGAAGA 126
||||||||||| ||||| || | |||| | |||||||||| ||||||||||||||||
Sbjct 60 ACCGGACTGTG-AATTTCCCGATA-AAATTAAATTGATTTGAACATGGCAATCGCGAAGA 117
Query 127 AATTGGAAAATGAGATCTCACGCTCTTCTCCTTCGTCATCATCATCATCGCTGAACGAAG 186
|||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
Sbjct 118 AATTGGAAGATGAGATCTCTCGCTCTTCTCCTTCG---TCATCATCATCGCTGAACGAGG 174
Query 187 CTCTGTTAATCTCTACTATGTGTATCATCGGCTTACAAGTCCATGTGCATATCAACGATG 246
|||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 175 CTCTGTTATTCTCTACTATGTGTATCATCGGCTTACAAGTCCATGTGCACATCAGCGATG 234
Query 247 GCTCTGTGTTTTCTGGGATATTCTACACTGTCTCTCTTGAGAATGAATTCAGTATTGTGT 306
|||| || |||||||||||||||||||| ||||||||||||| |||||||| |||||||
Sbjct 235 GCTCAGTTTTTTCTGGGATATTCTACACCATCTCTCTTGAGAACGAATTCAGCATTGTGT 294
Query 307 TGAAGAATGCAAAACTTACTAAGAAGGGAAGAAGTAAATCGAATGTAGAAAGTGGGAAGA 366
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 295 TGAAGAATGCAAAACTTACTAAGAAGGGAAGAAGTAAATCGAATGTAGCAAGTGGGAAGA 354
Query 367 TTGTGGAGACACTTGTGATTTTGTCTTCCAATATTGTTCAAATTGTTGCAGAGGGAGTCT 426
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 355 TTGTGGAGACACTTGTGATTTTGTCTTCTAATATTGTTCAAATTGTTGCGGAGGGAGTCT 414
Query 427 CGCTTTCGTCCAATGTTGCAGGGGAGATTGAGGGTGAAAATGTCGTGTCGGCCGTGGCAG 486
|||||||||||||||||||||| ||||| |||||||||||||| || |||||||||| ||
Sbjct 415 CGCTTTCGTCCAATGTTGCAGGCGAGATGGAGGGTGAAAATGTTGTCTCGGCCGTGGGAG 474
Query 487 TTTCTTCC 494
||||||||
Sbjct 475 TTTCTTCC 482
> Ahg492097 jgi|Araly1|492097|fgenesh2_kg.7__1530__AT4G26990.1
Length=1587
Score = 178 bits (96), Expect = 1e-43
Identities = 196/244 (80%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 204 ATGTGTATCATCGGCTTACAAGTCCATGTGCATATCAACGATGGCTCTGTGTTTTCTGGG 263
||||| || ||||| || ||||| ||||| || |||| ||||| || || |||||||||
Sbjct 178 ATGTGCATAATCGGATTGCAAGTTCATGTTCACGTCAAGGATGGTTCCGTCTTTTCTGGG 237
Query 264 ATATTCTACACTGTC-TCTC-TTGAGAATGAATTCAGTATTGTGTTGAAGAATGCAA-AA 320
|| |||| ||| | | || | | || || | || | ||||| ||||||||||||| ||
Sbjct 238 ATTTTCTTCACCG-CTTC-CGTCGACAACGGCTTTGGCATTGTTTTGAAGAATGCAAGAA 295
Query 321 CTTACTAAGAAGGGAAGAAGTAAATCGAATGTAGAAAGTGGGA-AGATTGTGGAGACACT 379
||||||||||||| | ||||||||| ||||||| ||| |||| | | || || |||||
Sbjct 296 -TTACTAAGAAGGGGACAAGTAAATCCAATGTAGCAAGCGGGACTG-TGGTCGATACACT 353
Query 380 TGTGATTTTGTCTTCCAATATTGTTCAAATTGTTGCAGAGGGAGTCTCGCTTTCGTCCAA 439
||| ||| |||||||||||||||||||||||||||| || |||||||||||| | || ||
Sbjct 354 TGTTATTCTGTCTTCCAATATTGTTCAAATTGTTGCGGAAGGAGTCTCGCTTCCATCGAA 413
Query 440 TGTT 443
||||
Sbjct 414 TGTT 417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71304938640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5