BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54930.1
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950145 jgi|Araly1|950145|scaffold_802032.1 1334 0.0
> Ahg950145 jgi|Araly1|950145|scaffold_802032.1
Length=901
Score = 1334 bits (722), Expect = 0.0
Identities = 840/898 (94%), Gaps = 3/898 (0%)
Strand=Plus/Plus
Query 112 CAATATC-GAGCTTGGAGAAATGGAGAAGGAAAGCCATGAGGAGAACAACCACACTATCT 170
||||||| | ||| |||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 1 CAATATCAAATCTTCAAGAAATGGAGAAGGAAGGACATGAGGAGAACAACCACACTGTCT 60
Query 171 CAGGTGATTTAACGGCAAAACGGAAACGAGGTCGTCCGAGGAAACAATTGAAGCTGGAAT 230
|||| ||||||| ||| ||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 61 CAGGAGATTTAATGGCGAAACGAAAACGAGGTCGTCCGAAGAAACAATTGAAGCTAGAAA 120
Query 231 CGAATGAGCACTCTCTTGGTCATTCTCCAAGTTTTAGCAGGAGTCAGCAGCAGTCTCGCC 290
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 CGAATGAGCAGTCTCTTGGTCATTCTCCAAGGTTTAGCAGGAGTCAGCAGCAGTCTCGCC 180
Query 291 AGAGGAATGACGATGAAGCTATGGTTGGACAGCCGATTAGTGGTGTGATTGAGGCGACAT 350
| ||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 181 ATAGGGATGGGGATGAAGCTATGGTTGGACAACCGATTAGTGGCGTGATTGAGGCAACAT 240
Query 351 TTGAAGCCGGGTTCTTGCTTTCTGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 410
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 TTGAAGCTGGGTTCTTGCTTTCGGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 300
Query 411 TGGTCTTCAAGCCTGGTCACTGTGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 470
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGTGTTCAAGCCCGGTCACTGCGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 360
Query 471 TTCCAATGATAAGAAGAAACAGTGATGTGATGCATCATGATGGCTCAGCTAAAAGAGGTC 530
|||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||
Sbjct 361 TTCCAATGATAAGAAGAAACAGTGATGTGAAGCATCATGACGGCTCAGCTAAACGAGGTC 420
Query 531 GGAAATCTAGATTCCGGGAGAAGCGTGGTAGTGGTGTTAGAAGCAGAGCATTGGTTCCTG 590
|||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GGAAATCTAGGTTCCGTGAGAAGCGTGGTAGTGGTGTTAGAACCAGAGCATTGGTTCCTG 480
Query 591 TCCCGATTCAGCCGGCTCATCCAACAATACCAAATAATCTTATTGTTCCCGTTGTGCTTC 650
|||||||| ||||||||||||| ||||||||||| |||||| | |||||||| |||||||
Sbjct 481 TCCCGATTGAGCCGGCTCATCCGACAATACCAAAGAATCTTGTGGTTCCCGTCGTGCTTC 540
Query 651 AGCC-TGCCCATCTAGAGAATGGTGGTGAGCGGGTCCCGATCGACCACAGTCCCATGCAG 709
|||| | |||||||| |||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 541 AGCCAT-CCCATCTACAGAATGGTGGTGGGCGGGTCCCGATTTACCATAGTCCCATGCAG 599
Query 710 ACCGAGACAGGGTCTCAAGCGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTTCTC 769
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 600 ACCGAGACAGGGTCTCAAGTGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTGCTC 659
Query 770 ACACAGGTGATGAATAAAGGTCAAGTCCAGCACACAACACAGTCCGTTGAACCCGAGTCA 829
||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 660 ACACAGGTGATGAATAAAGGTCAAGTCCATCACACAGCACAGTCCATTGAACCCGAGTCA 719
Query 830 GATGAGCAAGCTCTGTCCATTGAGCCATTGCAGGCGATACACCCAATCCATCCAGTACAT 889
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 720 GATGAGCAAGCTCTGTCTATTGAGCCATTGCAGGCGATACACCCGATCCATCCAGTACAT 779
Query 890 ATGCTGAAACCCATGCCGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 949
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGCCGAAACCCATGACGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 839
Query 950 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGACTATT 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 840 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGATTATT 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43040773293
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5