BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G54930.1 Length=1154 Score E Sequences producing significant alignments: (Bits) Value Ahg950145 jgi|Araly1|950145|scaffold_802032.1 1334 0.0 > Ahg950145 jgi|Araly1|950145|scaffold_802032.1 Length=901 Score = 1334 bits (722), Expect = 0.0 Identities = 840/898 (94%), Gaps = 3/898 (0%) Strand=Plus/Plus Query 112 CAATATC-GAGCTTGGAGAAATGGAGAAGGAAAGCCATGAGGAGAACAACCACACTATCT 170 ||||||| | ||| |||||||||||||||| | ||||||||||||||||||||| ||| Sbjct 1 CAATATCAAATCTTCAAGAAATGGAGAAGGAAGGACATGAGGAGAACAACCACACTGTCT 60 Query 171 CAGGTGATTTAACGGCAAAACGGAAACGAGGTCGTCCGAGGAAACAATTGAAGCTGGAAT 230 |||| ||||||| ||| ||||| |||||||||||||||| ||||||||||||||| ||| Sbjct 61 CAGGAGATTTAATGGCGAAACGAAAACGAGGTCGTCCGAAGAAACAATTGAAGCTAGAAA 120 Query 231 CGAATGAGCACTCTCTTGGTCATTCTCCAAGTTTTAGCAGGAGTCAGCAGCAGTCTCGCC 290 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 121 CGAATGAGCAGTCTCTTGGTCATTCTCCAAGGTTTAGCAGGAGTCAGCAGCAGTCTCGCC 180 Query 291 AGAGGAATGACGATGAAGCTATGGTTGGACAGCCGATTAGTGGTGTGATTGAGGCGACAT 350 | ||| ||| |||||||||||||||||||| ||||||||||| ||||||||||| |||| Sbjct 181 ATAGGGATGGGGATGAAGCTATGGTTGGACAACCGATTAGTGGCGTGATTGAGGCAACAT 240 Query 351 TTGAAGCCGGGTTCTTGCTTTCTGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 410 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 241 TTGAAGCTGGGTTCTTGCTTTCGGTTAAGGTTGGGAATTCAGATAGCATGCTTAGAGGTG 300 Query 411 TGGTCTTCAAGCCTGGTCACTGTGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 470 |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 301 TGGTGTTCAAGCCCGGTCACTGCGATCCTGTATCTGTTGATAACGATGTTGCTCCTGATG 360 Query 471 TTCCAATGATAAGAAGAAACAGTGATGTGATGCATCATGATGGCTCAGCTAAAAGAGGTC 530 |||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| Sbjct 361 TTCCAATGATAAGAAGAAACAGTGATGTGAAGCATCATGACGGCTCAGCTAAACGAGGTC 420 Query 531 GGAAATCTAGATTCCGGGAGAAGCGTGGTAGTGGTGTTAGAAGCAGAGCATTGGTTCCTG 590 |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 421 GGAAATCTAGGTTCCGTGAGAAGCGTGGTAGTGGTGTTAGAACCAGAGCATTGGTTCCTG 480 Query 591 TCCCGATTCAGCCGGCTCATCCAACAATACCAAATAATCTTATTGTTCCCGTTGTGCTTC 650 |||||||| ||||||||||||| ||||||||||| |||||| | |||||||| ||||||| Sbjct 481 TCCCGATTGAGCCGGCTCATCCGACAATACCAAAGAATCTTGTGGTTCCCGTCGTGCTTC 540 Query 651 AGCC-TGCCCATCTAGAGAATGGTGGTGAGCGGGTCCCGATCGACCACAGTCCCATGCAG 709 |||| | |||||||| |||||||||||| |||||||||||| |||| |||||||||||| Sbjct 541 AGCCAT-CCCATCTACAGAATGGTGGTGGGCGGGTCCCGATTTACCATAGTCCCATGCAG 599 Query 710 ACCGAGACAGGGTCTCAAGCGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTTCTC 769 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 600 ACCGAGACAGGGTCTCAAGTGAGTGGAGCGAGTAACGGCAAGCCTTTTGAGACGCTGCTC 659 Query 770 ACACAGGTGATGAATAAAGGTCAAGTCCAGCACACAACACAGTCCGTTGAACCCGAGTCA 829 ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| Sbjct 660 ACACAGGTGATGAATAAAGGTCAAGTCCATCACACAGCACAGTCCATTGAACCCGAGTCA 719 Query 830 GATGAGCAAGCTCTGTCCATTGAGCCATTGCAGGCGATACACCCAATCCATCCAGTACAT 889 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 720 GATGAGCAAGCTCTGTCTATTGAGCCATTGCAGGCGATACACCCGATCCATCCAGTACAT 779 Query 890 ATGCTGAAACCCATGCCGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 949 |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ATGCCGAAACCCATGACGAGTTACGGACGAGGCAAGATGACAGAACTCCTTCAGGCTGTG 839 Query 950 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGACTATT 1007 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 840 CAGGAGAATGTGAGAGAGACCCATTTTTCTCAAGGCCATTGATCTTCTGAAGATTATT 897 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43040773293 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5