BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G54940.1

Length=658
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950146 jgi|Araly1|950146|scaffold_802033.1                        627    4e-179


> Ahg950146 jgi|Araly1|950146|scaffold_802033.1
Length=381

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 367/380 (97%), Gaps = 4/380 (1%)
 Strand=Plus/Plus

Query  154  AAAGTAACCAAGTTTACATGGTTGAGCTAGACATTCAGATTCCATCAGCATACGATCCAT  213
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct  4    AAAGTAACCAAGTTTACATGGTTGAGCTAGACATTCAGATTCCATCAGCATTCGATCCTT  63

Query  214  TTGCAGAAGCTAAAGATTCAGATGCACCAGGAGCTAAAGAGAACATTCACATTCGAATCC  273
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  64   TTGCAGAAGCTAAAGATTCAGATGCACCTGGAGCTAAAGAGAACATTCACATCCGAATCC  123

Query  274  AGCAGAGGAATGGGAAAAAGAGCTTGACGACTGTTCAAGGGCTTAAGAAAGAGTACAGCT  333
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct  124  AGCAGAGGAATGGGAAAAAGAGCTTGACGACTGTTCAAGGCCTTAAGAAAGAGTATAGCT  183

Query  334  ACGAGAGGATTCTCAAGGATTTGAAGAAAGA-TTTCTGCTGCAACGGTAACGTTGTGCAG  392
            ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  184  ACGAGAGGATTCTCAAGGATTTGAAGAAAGACTTT-TGCTGCAACGGTAACGTTGTGCAG  242

Query  393  GACAAAGAACTAGGCAAGATCATCCAGCTTCAAGGTGATCAAAGGAAGAAAGTGTCTCAG  452
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  243  GACAAAGAGCTAGGCAAGATCATTCAGCTTCAAGGTGATCAAAGGAAGAAAGTGTCTCAG  302

Query  453  TTCTTGGTCCAAACTGGGATTGCTAAGAAGGATCAGATCAAGATCCACGGTTTCTAAA-C  511
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  303  TTCTTGGTCCAAACTGGGATTGCTAAGAAGGATCAGATCAAGATCCACGGTTTCTAAATC  362

Query  512  TGAACCCGAATTGGATCGTT  531
             ||| |||||||||||||||
Sbjct  363  -GAATCCGAATTGGATCGTT  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24131806461


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5