BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54970.1
Length=555
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495580 jgi|Araly1|495580|fgenesh2_kg.8__1396__AT5G54970.1 869 0.0
> Ahg495580 jgi|Araly1|495580|fgenesh2_kg.8__1396__AT5G54970.1
Length=550
Score = 869 bits (470), Expect = 0.0
Identities = 525/551 (95%), Gaps = 5/551 (1%)
Strand=Plus/Plus
Query 5 CTCTCTC-G-ATCATCAGATTCTTCAATCTCTTTCACCAAGCTTAACCAAATCGTTACCA 62
||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 3 CTCTCTCTGAATCCTCAGATTCTTCTATCTCTTTCACCAAGCTTAACCAAATCGTAACCA 62
Query 63 TGAAGGATATCTCTAAATCTCCGGCGAGAAGAAGCGACGGATTCCACCGCTACTTAAAAC 122
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 63 TGAAGGATATCTCTAAATCTCCGGCGAGAAGAAGCGACGGATACCACCGCTACTTAAAAC 122
Query 123 CAGGAGCGCTTGCTCAGATCCGAAACTCGAGAATCAACGCTAGATCTACTACATCTCTCG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 CAGGAGCGCTTGCTCAGATCCGAAACTCGAGAATCAACGCTAGATCTACTACATCTCTCG 182
Query 183 TATCTCGCTCCTCCCTCTCGCAGCTAGTAGATCCGATTTCACCATCTGAGAACTCGGTTG 242
||||||| |||||||||||||| ||| |||||||||||||||||||| ||||||| ||||
Sbjct 183 TATCTCGATCCTCCCTCTCGCAACTACTAGATCCGATTTCACCATCTCAGAACTCTGTTG 242
Query 243 ATGAAGCAGCAGCGGCTTCGCGGAATCTGACGATAGATCAGGTACCACATCTTCTAAGAA 302
|||||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||
Sbjct 243 ATGAAGCAGCGGCGGC---GCGAAACCTGACGATAGATCAGGTACCACATCTTCTAAGAA 299
Query 303 AGATCTATGGTCCTTACAGTTATCAGAGGAAGAAATTAGCCGCTGCTAGATCTGTCTCGT 362
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 300 AGATCTATGGTCCTTATAGTTATCAGAGGAAGAAATTAGCCGCTGCTAGATCCGTCTCAT 359
Query 363 CGATGATGATGATGAATATCAATCCTCCTATAAACTCAGTTCTTGTTGAACCCAGTAGTG 422
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 CGATGATGATGATGAATATCAATCCTCCTATAAATTCAGTTCTTGTTGAACCCAGTAGTG 419
Query 423 ATGTTATTGCTCATTGAGTTAAACTAGTTTCTACCAAATCTGTAATCTGATGATACAATT 482
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 ATGTTATTGCTCATTGAGTTAAACTAGTTTCTTCCAAATCTGTAATCTGATGATACAATT 479
Query 483 CGGGTAAAATGTTTAATACTATCATAAGACTCACTATATGAATCATTAAATTATCAATAA 542
|||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 480 GGGGTAAAATGTTCAATACTCTCATAAGACTCACTATATGAATCATTAAATTTTCAATAA 539
Query 543 ATTGTGTGTTT 553
|||||||||||
Sbjct 540 ATTGTGTGTTT 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20260617759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5