BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54980.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495581 jgi|Araly1|495581|fgenesh2_kg.8__1397__AT5G54980.1 1035 0.0
> Ahg495581 jgi|Araly1|495581|fgenesh2_kg.8__1397__AT5G54980.1
Length=622
Score = 1035 bits (560), Expect = 0.0
Identities = 596/614 (97%), Gaps = 0/614 (0%)
Strand=Plus/Plus
Query 112 caacaataacaacacaagagaagaagagagaagCAGTTCTTCAAAGCAGCAACAACCACA 171
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 9 CAACAACAACAACACAAGAGAAGAAGAGAGAAGCAGTTCTTCAAAGCAGCAGGAACCACA 68
Query 172 AGCTCCTATGTCTTTGAAGATCATAGATTCATGTCTCAGACTAAGTGTGGTTCCTCTCAG 231
||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 69 AGCTCATATGTCTTTGAAGATCATAGATTCATGTCTAAGACTCAGTGTGGTTCCTCTCAG 128
Query 232 TGTTGCAACCATCTGGTTAACTGTCACTAACCACGAATCCAACCCGGACTACGGCAATTT 291
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 129 TGTTGCAACCATCTGGTTAACTGTCACTAACCATGAATCCAACCCTGACTATGGCAATTT 188
Query 292 AGAGTACAACTCCATCATGGGTCTCAAGTATATGGTTGGTGTGAGTGCCATATCTGCTAT 351
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 AGACTACAACTCCATCATGGGTCTCAAGTATATGGTTGGTGTGAGTGCCATATCTGCTAT 248
Query 352 TTATGCTCTGCTCTCTACTGTTTCTTCATGGGTCACATGTTTAGTCTCCAAAGCTTGGCT 411
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 249 TTATGCTCTGCTCTCTACTATCTCTTCATGGGTCACATGTTTAGTCTCCAAAGCTTGGCT 308
Query 412 CTTCTTTATTCCTGACCAGGTTTTAGCTTATGTGATGACAACATCAGTAGCAGGAGCAAC 471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CTTCTTTGTTCCTGACCAGGTTTTAGCTTATGTGATGACAACATCAGTAGCAGGAGCAAC 368
Query 472 AGAGATAGTGTATCTACTTAACAAAGGAGACAAAATAGTGACATGGAGTGAAATGTGTTC 531
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 AGAGATAGTGTATTTACTTAACAAAGGAGACAAAATAGTGACATGGAGTGAAATGTGTTC 428
Query 532 TTCTTATCCACATTATTGTTCAAAACTCACAATTGCTTTGGGActtcatgtctttgttct 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TTCTTATCCACATTATTGTTCAAAACTCACAATTGCTTTGGGACTTCATGTCTTTGTTCT 488
Query 592 tttctttttcttatttctctctgtcatttctgcttatagagcttttAGTCCCTTTGATCC 651
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 489 TTTCTTTTTCTTATTTCTCTCTGTAATTTCTGCCTATAGAGCTTTTAGTCCCTTTGATCC 548
Query 652 TCCTTGTGATTCTCAAACCAATAATGATGCTTAAATTAGTCAGTTTTGGATTCAACTTTA 711
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 549 TCCTTGTGATTCTCAAACCAATACTGATGCTTAAATTAGTCAGTTTTGGAGTCAACTTTA 608
Query 712 TCAAAATGTTGCAG 725
||||||||||||||
Sbjct 609 TCAAAATGTTGCAG 622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5