BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G54990.1
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495582 jgi|Araly1|495582|fgenesh2_kg.8__1398__AT5G54990.1 944 0.0
> Ahg495582 jgi|Araly1|495582|fgenesh2_kg.8__1398__AT5G54990.1
Length=684
Score = 944 bits (511), Expect = 0.0
Identities = 627/684 (92%), Gaps = 3/684 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAACAGCTACAAGCATGAACTCATCTCAACCTCAACGAACGAAACTGATCGAGTC 60
|||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAGGGACAGCTACAAGCATGAACTTATCTCAACCTCAACTAACGAAACTGATCGAGTC 60
Query 61 ATTAATCGTTGCTTTCTCCGGAAAAAGACCACAAAAGAAGTCATTCATCTCAAAGCTTCT 120
||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |||| |
Sbjct 61 ATTAATCGTTGCTTTCTCCGGAAGAAGACCACACAAGAAATCATTCATCTCAGGGCTTTT 120
Query 121 CAGGT---CGAATCAGATTCGTATTCCTTCATCGTAACTTACCAGCCAAATCTTCGGATT 177
||||| |||||||||||||| || |||| |||||| || ||||||||||| ||||||
Sbjct 121 CAGGTAGAAGAATCAGATTCGTACTCTTTCACCGTAACATATCAGCCAAATCTACGGATT 180
Query 178 CGTCATGAAAATCTCGATGGACACCAACTTAAGACCACTCTTGAACGTCATCCCGATCGT 237
|||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 181 CGTCATGAAAATCTCGATGGACACGAACTTAAGACCACTATTGAACGTCATCGCGATCGT 240
Query 238 GTATTTAAACTCGAAGACAACATCCCAAAACAGTTTCTTGTCTCTCAAGAAACATGCCTT 297
| | || |||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 241 GCACTTCAACTCGAAGACAGCATCCCAAAAAAGTTTCTTGTCTCTCAAGAAACATGTCTC 300
Query 298 GAACACGTCATGATCATCTTGTCGGCGATGTATCTCCCGCAAACTATTCAAGAACGTCTT 357
|| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 301 GAGCACGTCATGATCATCTTGTCGGCGATGTATCTCCCGCATTCGATTCAAGAACGTCTT 360
Query 358 GTCCGTTACATCTCAACCGAATCCGTCAAGTTCAGAAACCGCCGCTGCGGAACAGGAGGA 417
||||||||||||||||| ||||| || |||||||| ||||||||| |||||| |||||||
Sbjct 361 GTCCGTTACATCTCAACAGAATCAGTTAAGTTCAGCAACCGCCGCCGCGGAAGAGGAGGA 420
Query 418 GGTTTGAAGGTAGAAGTTGACGTTAAAGTCGACGTGGAACAATGGGTGAGGATTGATTGT 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GGTTTGAAGGTAGAAGTTGACGTTAAAGTGGACGTGGAACAATGGGTGAGGATTGATTGT 480
Query 478 TGTTGTAAACAAAAGGGTACTTGTCTGGTCCCGGCGTTGGATTGTCCGATATGCTTAACG 537
||||||||||||||||||||||||||||| |||||| |||||||||||||||| || |||
Sbjct 481 TGTTGTAAACAAAAGGGTACTTGTCTGGTTCCGGCGATGGATTGTCCGATATGTTTGACG 540
Query 538 GAGTTATCTAGTGGGGTGAGTCGCATGAAGTTACCATGTTCCCATGTTTTTCACAGAGAC 597
|| |||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 541 GAATTATCTAGTGAGGTGAGTCGCATGGAGTTACCATGTTCCCATGTTTTTCATAGAGAC 600
Query 598 TGTATAATGACGTGGCTGAAAAAGAACCCTTCTTGTCCTATCTGCCGAACCAAAGCTCAT 657
||| | |||||||||||||||| ||| |||||||| |||||||||||||||||| ||| |
Sbjct 601 TGTGTTATGACGTGGCTGAAAATGAAGCCTTCTTGCCCTATCTGCCGAACCAAACCTCTT 660
Query 658 GGCAAAACTGTTTCTATCTATTAA 681
||| ||||||||||||||||||||
Sbjct 661 GGCGAAACTGTTTCTATCTATTAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25008633552
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5