BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55020.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495585 jgi|Araly1|495585|fgenesh2_kg.8__1401__AT5G55020.1 1467 0.0
Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1 313 3e-84
Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2 259 4e-68
Ahg495295 jgi|Araly1|495295|fgenesh2_kg.8__1111__AT5G52260.1 60.2 4e-08
> Ahg495585 jgi|Araly1|495585|fgenesh2_kg.8__1401__AT5G55020.1
Length=1500
Score = 1467 bits (794), Expect = 0.0
Identities = 1008/1103 (91%), Gaps = 47/1103 (4%)
Strand=Plus/Plus
Query 421 ATTATCCCTaaccatcaactccatccacat-c-c-ac---atcat------caacaacaa 468
|||||||||||||||||||||||||||||| | | || ||||| |||||||||
Sbjct 397 ATTATCCCTAACCATCAACTCCATCCACATCCACAACATTATCATCAACAACAACAACAA 456
Query 469 cagcaacataa-c--catcat---catcatcatcatcaacaacaacaaca--a-catcaa 519
|| |||||||| | |||||| |||||||||||||||||||||||||| | ||||||
Sbjct 457 CAACAACATAACCATCATCATCACCATCATCATCATCAACAACAACAACATCATCATCAA 516
Query 520 caaatgtattttcaaccacaatcttcacaacgaaacacacCATCATCTTCCCCTCTTCCA 579
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 517 CAAATGTATTTTCAACCACAATCTTCACAACCAAACACACCATCATCCTCCCCTCTTCCA 576
Query 580 TCTCCAACACC---A---GCAAACGCAAAGTCCTCATCATCCTTCACTTTTCATACCACG 633
||||||||||| | ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 577 TCTCCAACACCAGTATCCGCAAACGCAAACTCCTCATCATCTTTCACTTTTCATACCACA 636
Query 634 ACTGCTAACCTCCTCCATCCACTTAGCCCTCACACTCCAAACACA-C-C--A-----TCT 684
|| ||||| |||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 637 ACCGCTAATCTCCTCCATCCACTTAGCCCTCACACTCCAAACACACCACAAACTCCTTCT 696
Query 685 CAACTCTCTTCCACACCGCCTCCACCACCACTTTCCTCTCCTTTATGTTCCCCTCGCAAC 744
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 697 CAACTCTCTTCCACACCGCCTCCACCGCCACTTTCCTCTCCTTTATCTTCCCCTCGCAAC 756
Query 745 AACCAATACCCGACCCTTCCCCTCTTTGCCCTCCCGCGTTCCCAAATCAACAACAACAAC 804
|||||||||||||| ||||| ||||| |||||||| |||||||||| ||| |||||
Sbjct 757 AACCAATACCCGACTCTTCCTCTCTTCGCCCTCCCAAGTTCCCAAAT---CAATAACAAT 813
Query 805 AACGGAAATTTCACTTTCCCTAGACCTCCACCTCTCCTTCAACCGCCTTCATCACTCTTC 864
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 814 AACGCAAATTTCACTTTCCCTAGACCTCCACCTCTCCTTCAACCGCCTTCATCGCTCTTC 873
Query 865 GCAAAACGTTACAACAATGCTAACACTCCTCTTAATTGCATCAACCGCGTCTCAACCGCA 924
|| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 874 GCTAAACGTTACAACAATGCGAATACTCCTCTCAATTGCATCAACCGCGTCTCAACCGCT 933
Query 925 CCATTTTCCCCTGTTTCAAGAGACTCCTACACTTCCTTTCTTACATTGCCTTACCCTTCC 984
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 934 CCATTTTCCCCTGTTTCAAGAGACTCCTACACTTCGTTTCTAACATTGCCTTACCCTTCC 993
Query 985 CCAACCGCTCAAACCGCTACTTACCACAATACTAATAACccttactcttcctctccttcc 1044
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 994 CCAACCGCTCAAACAGCTACTTACCACAACACTAATAACAATTACTCTTCCTCTCCTTCC 1053
Query 1045 ttctctttaaa-cc--cttcttcttcttcttaccctacatcaacttcttccccaagcttt 1101
||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1054 TTCTCTTTAAACCCTTCTTCTTCTTCTTCTTACCCTACAGCAACTTCTTCCCCAAGCTTT 1113
Query 1102 cttcACTCCCATTACACTCCTTCTTCCACCTCATTTCATACCAACCCAGTTTACTCCATG 1161
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1114 CTTCACTCCCATTACACTCCTTCTTCCACCTCCTTTCATACCAACCCGGTTTACTCCATG 1173
Query 1162 AAACAAGAGCAGCTCCCTTCAAACCAAATTCCCCAAATAGATGGCTTCAATAACGTCAAC 1221
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1174 AAACCAGAGCAGCTCCCTTCAAACCAAATTCCCCAAATAGATGCCTTCAATAATGTCAAC 1233
Query 1222 AACTTCACAGACAACGAGAGACAGAATCATAACCTTAACAGTTCCGGTGCTCATAGAAGA 1281
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1234 AACTTCACAGACAATGAGAGACAAAATCATAACCTTAACAGTTCCGGTGTTCATAGAAGA 1293
Query 1282 AGTAGTAGCTGCAGCCTCTTAGAGGATGTC-TTCGAAGAGGCCGAAGCTTTAGCCTCTGG 1340
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1294 AGTAGTAGCTGCAGCCTCTTAGAGGATGTCCTT-GAAGAAGCCGAAGCTTTAGCCTCTGG 1352
Query 1341 AGGCAGAGGCCGACCTCCAAAACGAAGACAACTCACAGCTTCTCTTCCGaaccacaacaa 1400
|||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 1353 AGGCAGAGGCCGGCCTCCAAAACGAAGACAACTCACAGCTTCTCCTCC-AA--ACAACAA 1409
Query 1401 caacaccaacaacaacgacaacTTCTTCTCGGTTAGTTTCGGACATTATGATTCTTCTGA 1460
| | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1410 CGATAACAACAACAACGACAACTTCTTCTCGGTTAGTTTCGGACATTATGACTCTTCTGA 1469
Query 1461 CAACTTATGTTCCTTGCAAGGTA 1483
||||||||||||| | |||||||
Sbjct 1470 CAACTTATGTTCCGTACAAGGTA 1492
Score = 549 bits (297), Expect = 2e-155
Identities = 317/327 (97%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 1 ATGATCATGTACGGAGGAGGAGGAGCAGGGAAGGACGGTGGATCCACCAATCACTTATCA 60
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGATCCTGTACGGAGGAGGAGGAGCAGGGAAAGACGGTGGATCCACCAATCACTTATCA 60
Query 61 GACGGAGGAGTGATATTGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATACTTGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACGGAGGAGTGATATTGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATACTTGCT 120
Query 121 GCGTACGTTAGAGAGAACGGTGAAGGGAATTGGAACGCCGTTCAGAAAAACACAGGTTTG 180
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 121 GCGTACGTTAGAGAGAACGGTGAAGGAAACTGGAACGCCGTTCAGAAAAACACAGGTTTG 180
Query 181 GCTCGTTGCGGCAAAAGCTGCCGTCTTCGATGGGCCAATCACCTCCGACCAAATCTGAAA 240
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 181 GCTCGTTGCGGCAAAAGCTGCCGTCTTCGATGGGCCAATCACCTCCGTCCCAATCTCAAA 240
Query 241 AAAGGCTCTTTCACCGGTGACGAAGAACGTCTCATCATTCAGCTTCATGCTCAGCTTGGT 300
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGCTCTTTCACCGGCGATGAAGAACGTCTCATCATTCAGCTTCATGCTCAGCTTGGA 300
Query 301 AACAAATGGGCTCGCATGGCTGCTCAG 327
|||||||||||||||||||||||||||
Sbjct 301 AACAAATGGGCTCGCATGGCTGCTCAG 327
> Ahg492106 jgi|Araly1|492106|fgenesh2_kg.7__1539__AT4G26930.1
Length=1149
Score = 313 bits (169), Expect = 3e-84
Identities = 304/368 (83%), Gaps = 14/368 (4%)
Strand=Plus/Plus
Query 77 TGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATAC-TT-GCTGCGTACGTTA-GAG 133
|||||||||| |||||||||| |||||| || ||| || || || || || | || | |
Sbjct 56 TGAAGAAAGGGCCATGGACGGTGGCGGAGGACGAG--ACTTTGGCGGCTTATG-TACGGG 112
Query 134 AGA-ACGGTGAAGGGAATTGGAACGCCGTTCAGAAAAACACAG-GTTTGGCTCGTTGCGG 191
| | ||||||||||||| ||||| || |||||||| || || | | ||||||| |||||
Sbjct 113 A-ATACGGTGAAGGGAACTGGAATGCTGTTCAGAAGAAGAC-GTGGCTGGCTCGGTGCGG 170
Query 192 CAAAAGCTGCCGTCTTCGATGGGCCAATCACCTCCGACCAAATCTGAAAAAAGGCTCTTT 251
|| |||||||| || || ||||| || ||||||||||| ||||| | |||||||| ||
Sbjct 171 TAAGAGCTGCCGCCTCCGCTGGGCTAACCACCTCCGACCTAATCTCAGGAAAGGCTCCTT 230
Query 252 CACCGGTGACGAAGAACGTCTCATCATTCAGCTTCATGCTCAGCTTGGTAACAAATGGGC 311
|||| ||| ||||||||||||||||| || || ||| ||||||| || |||||||||||
Sbjct 231 CACCCCTGAGGAAGAACGTCTCATCATACAACTCCATTCTCAGCTCGGCAACAAATGGGC 290
Query 312 TCGCATGGCTGCTCAGTTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGGAACAC 371
||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct 291 TCGCATGGCTGCTCAGTTACCAGGAAGAACAGATAACGAGATCAAGAACTACTGGAACAC 350
Query 372 GAGATTGAAACGACTTCTT-CGCCAAGGACTTCCTCTTTATCCTCCAGATATTATCCCTa 430
||| |||||||| |||| |||||||| || ||||| || |||||||||||| |||| |
Sbjct 351 GAGGTTGAAACG-CTTCCAACGCCAAGGCCTCCCTCTATACCCTCCAGATATT-TCCCCA 408
Query 431 acca-tca 437
| || |||
Sbjct 409 AGCAATCA 416
> Ahg482173 jgi|Araly1|482173|fgenesh2_kg.4__1233__AT2G32460.2
Length=1723
Score = 259 bits (140), Expect = 4e-68
Identities = 255/308 (83%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 76 TTGAAGAAAGGTCCATGGACGGCGGCGGAAGATGAGATACTTG-CTGCGTACGTTAGAGA 134
||||||||||| || ||||| || |||| |||| ||| |||| | | |||||| || ||
Sbjct 132 TTGAAGAAAGGGCCGTGGACAACGACGGAGGATGCGAT-CTTGACGGAGTACGTGAG-GA 189
Query 135 GA-ACGGTGAAGGGAATTGGAACGCCGTTCAGAAA-AACACAGGTTTGGCT-CGTTGCGG 191
| |||||||||| |||||||||||||| || ||| ||| ||||||| ||| || || ||
Sbjct 190 AACACGGTGAAGGTAATTGGAACGCCGTGCA-AAAGAACTCAGGTTT-GCTCCGGTGTGG 247
Query 192 CAAAAGCTGCC-GTCTTCGATGGGCCAATCACCTCCGACCAAATCTGAAA-AAAGGCTCT 249
|||||| |||| || | || ||||| ||||| ||||| |||||||| ||| ||||| |||
Sbjct 248 CAAAAGTTGCCGGT-TACGGTGGGCGAATCATCTCCGGCCAAATCT-AAAGAAAGGATCT 305
Query 250 TTCAC-CGGTGACGAAG-AACGTCTCATCATTC-AGCTTCATGCTCAGCTTGGTAACAAA 306
|| || | ||| |||| || | |||||| || ||||||| ||| |||| || ||||||
Sbjct 306 TTTACTC-CTGATGAAGAAAAG-ATCATCA-TCGAGCTTCACGCTAAGCTCGGAAACAAA 362
Query 307 TGGGCTCGCATGGCTGCTCAGTTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGG 366
|||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 363 TGGGCTCGTATGGCTTCTCAGTTACCGGGAAGAACAGACAACGAGATCAAGAACTATTGG 422
Query 367 AACACGAG 374
||||||||
Sbjct 423 AACACGAG 430
> Ahg495295 jgi|Araly1|495295|fgenesh2_kg.8__1111__AT5G52260.1
Length=870
Score = 60.2 bits (32), Expect = 4e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 329 TACCGGGAAGAACAGACAACGAGATTAAGAACTATTGG 366
|||| ||||||||||||||||||||||||||||| |||
Sbjct 287 TACCTGGAAGAACAGACAACGAGATTAAGAACTACTGG 324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5