BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55040.1
Length=3348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495586 jgi|Araly1|495586|fgenesh2_kg.8__1402__AT5G55040.2 4174 0.0
> Ahg495586 jgi|Araly1|495586|fgenesh2_kg.8__1402__AT5G55040.2
Length=3229
Score = 4174 bits (2260), Expect = 0.0
Identities = 2694/2895 (93%), Gaps = 63/2895 (2%)
Strand=Plus/Plus
Query 15 agagagagagagaCCTTAGCTGTATAGAGAGAGAAAGGGATTGGGTGTTGTGCACTGAGT 74
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 11 AGAGAGAGAGAGACCTTAGCTG--TAGAGAGAGAAAGGGATTGGGTGTTGTGCACTGAGT 68
Query 75 TCGATagagaagaagaagaagaagaagaagaagaagaTGAGTCAGATCGCGAGACGACGG 134
||||| || |||||||||||||||||||||||||||| |||
Sbjct 69 TCGAT--------------------AG-AGAAGAAGATGAGTCAGATCGCGAGACGGCGG 107
Query 135 AGGAAAGGTCGTCCGTCGAAGGCAGATCTGGCGGCGCGGCGTAGTAGTTCATCTCCGCGT 194
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 108 AGGAAAGGTCGACCGTCGAAGGCGGATCTGGCGGCGCGGCGTAGTAGTTCATCACCGGGT 167
Query 195 GAATCGGGATATGAGCTCCGGCGAGGTCAAAGGCAGCGAAATGTGAGGTATAACTTCGAT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GAATCGGGATATGAGCTCCGGCGAGGTCAAAGGCAGCGAAATGTGAGGTATAACTTCGAT 227
Query 255 TTCGACGATTACTTCGACgaggaggaagaggatgaggttgaagaggagaagaagagacag 314
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 228 TTCGACGATTACTTCGACGAGGAGGAAGAGGATGATGTTGAAGAGGAGAGGAAGAGGCAG 287
Query 315 aagaagCTGAAACAAGTTCTTAAGCTGAACCAGAGCCGTGCTAGAGCTGACCCTCCTG-T 373
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 288 AAGAAGCTGAAACAAGTTCTTAAACTGAACCAGAGCCGTGCTAGAGCTGACCCTCC-GAT 346
Query 374 TAAGAGTCGAGCGCGTGTGAGACACGCGTCTGATTAt---gaagaagaagacg-a-a-ga 427
||||||||||||||||||||||||||||||||||||| ||||||||||| | | | ||
Sbjct 347 TAAGAGTCGAGCGCGTGTGAGACACGCGTCTGATTATGAAGAAGAAGAAGAAGAAGATGA 406
Query 428 --a-gatgatgaagcagaggaggaggaggaagaagtaagtgagaagaggcaagtcaagaa 484
| |||||||||||||||||||| |||||||| || ||||||||||||||||| |||||
Sbjct 407 TGAGGATGATGAAGCAGAGGAGGACGAGGAAGATGTGAGTGAGAAGAGGCAAGTGAAGAA 466
Query 485 gaggaaacttaaccgtcaagacgaagaagaggaagaggaagaagagaaggattacgatgt 544
||||||| |||||||||| ||||| ||||| | | | |||||||||||||||||||||||
Sbjct 467 GAGGAAAATTAACCGTCACGACGACGAAGATG-A-A-GAAGAAGAGAAGGATTACGATGT 523
Query 545 ggaagaggaggaagaagaagaagaaggtcacgctgattctgaggaagaggatgataagga 604
|||||| || ||| || |||||| | | ||||||||||||||||| |||||||||||
Sbjct 524 GGAAGA-GA--AAG-AG--GAAGAA-G--AAGCTGATTCTGAGGAAGATGATGATAAGGA 574
Query 605 aaggaagaggaggagCGCTTCTGGGAATCAGTGTGATCATTCTTCAGAAACAACACCTAT 664
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 575 AAGGAAGAGGAGGAGTGCTTCTGGGACTCAGTGTGATCATTCTTCAGAAACAACACCTAT 634
Query 665 CCTTGACAAGAAGTCTTTGGAGTTGATTCTTGACAAACTTCAAAAGAAAGACATCTATGG 724
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 635 CCTTGACAAGAAGTCTTTGGAGTTGATTCTTGACAAACTTCAGAAGAAAGACATTTATGG 694
Query 725 TGTGTATGCAGAACCTGTTGATCCTGAAGAGCTTCCTGATTATCATGATATGATAGAGCA 784
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 695 TGTGTATGCAGAACCGGTTGATCCTGAAGAGCTTCCTGATTATCATGAGATGATAGAGCA 754
Query 785 TCCCATGGATTTTTCCACAGTGAGGAAGAAGCTTGCGAATGGATCATATTCTACGTTGGA 844
|||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 755 TCCCATGGATTTTTCCACTGTGAGAAAGAAGCTTGCAAATGGATCATATTCTACATTGGA 814
Query 845 AGAGCTCGAGAGCGATGTCTTATTGATTTGCTCAAATGCAATGCAATACAATTCCTCAGA 904
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 815 AGAGCTTGAGAGCGATGTCTTATTGATTTGCTCAAATGCGATGCAATACAATTCCTCAGA 874
Query 905 CACTGTCTACTATAAACAGGCAAGGACTATTCAGGAAATGGGAAAGCGGAAGTTCGAGAA 964
|||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| || ||
Sbjct 875 CACTGTGTACTATAAACAGGCAAGGACTATTCAGGAAATGGGGAAGAGGAAGTTTGACAA 934
Query 965 GGCAAGGCTTAAGATTAAACGAGCTGAAAAAGAGCTTAAAACAGATGAAAAGGTGAAACC 1024
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 935 GGCAAGAATTAAGATTAAACGTGCTGAGAAAGAGCTTAAAACAGATGAAAAGGTGAAACC 994
Query 1025 TGACAGCTCTGTGAAGAAGCAAGTGAGACAGCCATTCAGTCGAAATGGTCTAGAGGCCGT 1084
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 995 TGTCAGCTCTGTGAAGAAGCAAGTGAGACAGCCATTCAGTCGAAATGGACTAGAGCCCGT 1054
Query 1085 TGGTTCTGATTTCTCATCTGGGGCGAACCTTGCTAGTGGAGGAGCTTCTCAAAACGAGCC 1144
||||||||||||||| | ||| || |||||||| |||||||||||||||||||| || ||
Sbjct 1055 TGGTTCTGATTTCTCCTTTGGTGCAAACCTTGCAAGTGGAGGAGCTTCTCAAAATGAACC 1114
Query 1145 GGTTTCAACTCAAATC-GGCGGACATGAAAAGCACAGCTACACGGATGTGCTTTTTGAGG 1203
||||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1115 TGTTTCAACTCAAA-CTGGCGGACATGAAAAGCACAGCTGTACGGATGTGTTTTTTGAGG 1173
Query 1204 GCAACACAT-CATTAGTAGACAGTCTGGAGAAAGCAGAAGACTTATCATCTGGGAAGGGT 1262
| || |||| || ||||||||| ||||||||||||||||||||| ||||| || ||||||
Sbjct 1174 GAAATACATCCA-TAGTAGACAATCTGGAGAAAGCAGAAGACTTGTCATCCGGAAAGGGT 1232
Query 1263 CTCT-TTGGTAAGTGTGGGAGGAAGCTGTCGGTTGTTGAGGAAGACCGCCGTGCAACCTA 1321
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 CT-TGTTGGTAAGTGTGGGAGGAAGCTGTCGGTTGTTGAGGAAGACCGCCGTGCAACCTA 1291
Query 1322 TGAAGATTCTGATCAGCAGGGCGATAGATCGGAGTCCATATTCACAACATTTGAGAGTGA 1381
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1292 TGAAAATTCTGATCAGCAGGCCGATAGATCGGAGTCCATATTCACAACATTTGAGAGTGA 1351
Query 1382 AATCAAGCAGTTTGTTGCTGTAGGGCTTCATGCAGAACATGCGTATGGTAGGAGCCTTGC 1441
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 AACCAAGCAGTTTGTTGCTGTAGGGCTTCATGCAGAACATGCGTATGGTAGGAGCCTTGC 1411
Query 1442 ACGTTTTGCTGCAACTCTTGGACCCGTTGCATGGAAAATAGCTTCTCAGCGAATCGAGCA 1501
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1412 ACGTTTTGCTGCTACTCTTGGACCCGTTGCATGGAAAATAGCTTCTCAGCGAATTGAGCA 1471
Query 1502 AGCACTACCTGCAGACTTTAAGTTTGGCCGGGGATGGGTTGGAGAATACGAGCCGCTTCC 1561
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1472 AGCACTTCCTGCAGACTTTAAGTTTGGTCGGGGATGGGTTGGAGAATACGAGCCGCTTCC 1531
Query 1562 TACACCAGTACTTCTATTTGAAACCTGCACACCTAAAGAACCACCTAAAAAAGCATCTGT 1621
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1532 TACGCCAGTACTTCTATTTGAAACCTACACACCTAAAGAACCACCTAAAAAAGCATCTGT 1591
Query 1622 GTTTTCAAAGCGGAAATCAAATGCTGCAACAAAGACGAATGAGACACTGTTTAAGACTCC 1681
|||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1592 CTTTTCAAAGCCAAAATCAAATGCTGCTGCAAAGAAGAATGAGACACTGTTTAAGACTCC 1651
Query 1682 TCTGCCTGCAAAGGAACAACAGGGTAGCCGACCAGTTCGAGATGGAAACCATGCATTCCC 1741
|||||| | ||||||||||||||||| | |||| |||||||||||||||| |||||||||
Sbjct 1652 TCTGCCCGTAAAGGAACAACAGGGTAACAGACCCGTTCGAGATGGAAACCGTGCATTCCC 1711
Query 1742 ATTTCCAGCATCTATTGGGGCTTTGTCAGAAGGGAGTCCCTCTTTTGTTGCTACTCAGGT 1801
||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||| ||
Sbjct 1712 ATTTCCAACATCTATTGGGGCTTCGTTAGAAGGGAGTCCTTCTTTTGTTGCTACTCAAGT 1771
Query 1802 AGGAAACCTAAAATCTATGAGCCAGCATGAATATCGAAATCCTTCTCAGCTAGATTTTGT 1861
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1772 AGGAAACCTAAAATCTATGAGCCAGCATGAATATCGGAATCCTTCTCCGCTAGATTTTGT 1831
Query 1862 CAAGCCTCAAAATAGGATTCCTCAGCAAGTAGAACTGAATTTACCCCCACCAGCAGAACA 1921
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1832 CAAGTCTCAAAATAGGATTCCTCAGCAAGTAGAACTGAATTTGCCCCCACCAGCAGAACA 1891
Query 1922 AACCAATTCCGGTTCTGGC-TGTGTTTTGGAAAACCAAAGCTTTGGAAAATCAGATACGG 1980
| ||||||| |||||| | ||||||| |||||||| |||||||||||||||||||| |
Sbjct 1892 ATCCAATTCTGGTTCT-ACTTGTGTTTCGGAAAACCGTAGCTTTGGAAAATCAGATACAG 1950
Query 1981 TGGCATCATACAGGTCATCAAGTGACATGATGAGGAACATGAGTTCTACAGATTCTGAAC 2040
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1951 TGGCATCATACAGGTCATCAAGTGACATGATGAGGAACATGACTTCTAAAGATTCTGAAC 2010
Query 2041 ATTACAAGCACCAGATGACTACTAACGGGATCTTCCCTGGTGGATTGAGGAATGGCAAAG 2100
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2011 ATTACAAGCATCAGATGACTACTAACGGGATCTTCCCTGGTGGATTGAGTAATGGCAAAG 2070
Query 2101 TCTCTCCCGGTGTGAACAACAGAATGTTTGATCTATCTACTGATTTTGCTAATCAAATGA 2160
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 ACTCTCCCGGTGTGAACAGCAGAATGTTTGATCTATCTACTGATTTTGCTAATCAAATGA 2130
Query 2161 GTCGCACAGCAACAAGTTCACAGCAACCAATGAGACAACAGAGTCAAAGCCACGAG-GAA 2219
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||| | |||
Sbjct 2131 GTCGCACAGCAACAAGTTCACAACAACCCATGAGACAACAGAGTCAAAGCCACG-GCGAA 2189
Query 2220 CAAGCACAGATAATGAGAAACTTCAATGAGAGGGCTAGAACACAGCACAACTCCACTTAT 2279
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2190 CAAGCACAGTTAATGAGAAACTTCAATGAGAAGGCTAGAACACAGCACAACTCCACTTAT 2249
Query 2280 AATCATCCTAAAGCTGATGCTCCACCGAAGATTTCGTCACCACAATCCGCAAGAAGTGAA 2339
||||||||||||||||||||| |||| || | |||||||||||||||||||||||||||
Sbjct 2250 AATCATCCTAAAGCTGATGCTACACCTAATCTCTCGTCACCACAATCCGCAAGAAGTGAA 2309
Query 2340 GATTCAG-GCAATGCTTCTGTAGCAGCAGCACGAGCATGGATGTCGATAGGAGCTGGAGG 2398
||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 2310 GATTC-GAGCAATGCTTCTGTAGCAGCTGCAAGAGCATGGATGTCGATAGGAGCTGGAGG 2368
Query 2399 GAATAATAAACAAACATTTGAAAATGCTAGTAATCCGAAGAGCAGCCAGATTTCTGCGGA 2458
||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||
Sbjct 2369 GAATAATAAACAAACATTTGAAAATCCTACTAATCCGAGGAGCAGCCACATTTCTGCGGA 2428
Query 2459 GTCCTTGTATAATCCATCAAGAGAACATTTTCACCAACAAGCTTTCAAACCGAGAGATGC 2518
||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||| |
Sbjct 2429 GTCCTTGTATAATCCGTCAAGGGAACAACTTCACCAACAAGCTTTCAAACCAAGAGACCC 2488
Query 2519 TGAAGAGACACAGTTCCATCCTCAAAGGAATGGTTTCCCTTTCCAGACATTTGTGCACCA 2578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2489 CGAAGAGACACAGTTCCATCCTCAAAGGAATGGTTTCCCTTTCCAGACATTTGTGCACCA 2548
Query 2579 ACCTGTTCACGGGATGATGAACGGAGGATAC-CAACCATTTCAAAACAACCGACCAATTG 2637
|||||||||||||||||||| | ||||| | ||||||||||| ||||||||||| ||||
Sbjct 2549 GCCTGTTCACGGGATGATGAATGTAGGAT-CACAACCATTTCAGAACAACCGACCGATTG 2607
Query 2638 TTTTCCCTCAGATGGCTGCCCCAACTTCTGATTTCTCAAGATTCCATGTCCAGTCTCAAT 2697
|||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2608 TTTTTCCTCAGATGGCTGCTCCAACTTCTGATTTCACAAGATTCCATGTCCAGTCTCCAT 2667
Query 2698 GGCGAGGAGGCATTACTCCACAAGTCCAGTTGAAGCAGAGACAAGAGAATTTCAATCTCC 2757
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2668 GGCGAGGAGGCATTACTCCACAAGTCCAGTTGAAGCAGAGACAAGAGAATCTCAATCTCC 2727
Query 2758 CACCAGATTTGAACATCGGAGTTCATTCGCCTGATTCTCCTGCAAAACAATCTTCTGGTG 2817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2728 CACCAGATTTGAACATCGGAGTTCATTCGCCTGATTCTCCTGCAAAACAATCTTCTGGTG 2787
Query 2818 TTCGTGTCGATTCCCAACAGCCTGATTTGGCGCTACAGCTCTAAAGAAACAGCCATGAAG 2877
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2788 TTCGTGTCGATTCCCAACAGCCTGATTTGGCGCTACAGCTCTAAAAAAACAGCCATGAAG 2847
Query 2878 AACAAGCCCAA-CAA 2891
|| || ||||| |||
Sbjct 2848 AA-AA-CCCAAGCAA 2860
Score = 294 bits (159), Expect = 2e-78
Identities = 210/232 (91%), Gaps = 13/232 (6%)
Strand=Plus/Plus
Query 3118 TTCGAGGTTCAGGCTGGTTTAGAGTCATCATCAGTCATCAGTATAGTTGGTCTAAGAGTT 3177
||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||
Sbjct 2973 TTCGAGGTTCAGGCTGG-TTAGAG---TCATCAGCCATCAGTATAGTTGGTCTAAGAGTT 3028
Query 3178 -GAATTTGGAGAATGCTTATTGATATCGACACCGTGGTTAGCTAACGATGTTCCTAACGT 3236
||||||||| || ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 3029 AAAATTTGGAG-ATTTTTATTGATATCGACACCCCGGTTAGCTAACTATGTTCCTAACGT 3087
Query 3237 AGATG-TTCAATCAAACCAAT-CAAGTTCTTGATTCACCTGATTCCCTGAAGTCTTTGGT 3294
||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3088 AGATGTTTC-ATCAAACCAATCCAAGTTCTTGATTCACCTGATTCCCTGAAGTCTTTGGT 3146
Query 3295 CTTCCTACACTTCTCTATTTGTTCTATATATAATATACGAATTAGTATTATA 3346
|||||||||||||||| |||||| |||| ||| ||| ||||||||||||||
Sbjct 3147 CTTCCTACACTTCTCTTTTTGTTATATA-ATA-TAT--GAATTAGTATTATA 3194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126389199933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5