BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55060.1
Length=2293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495589 jgi|Araly1|495589|fgenesh2_kg.8__1405__AT5G55060.1 3373 0.0
Ahg952638 jgi|Araly1|952638|scaffold_98900001.1 281 1e-74
> Ahg495589 jgi|Araly1|495589|fgenesh2_kg.8__1405__AT5G55060.1
Length=2192
Score = 3373 bits (1826), Expect = 0.0
Identities = 2049/2156 (95%), Gaps = 17/2156 (1%)
Strand=Plus/Plus
Query 112 ACAGGTGCGCACGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 171
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ACAGGTGCGCATGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 105
Query 172 CTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 TTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 165
Query 232 GGAGGAGAAGCAATCGACGAGGAATGTGAATGACTCTCAGGAGGAGAATGAAGTGAAGAC 291
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 166 GGAGGAGAAGCAATCGACGAGGGATGTGAATGACTCTCAGGAGGAGAATGAAGTGAAG-C 224
Query 292 -TCAGGGGTGGAGAACTGCACATATTAGGAAAAAGCAAGAGTGGCAAAATAAACTGAAAA 350
|||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 225 ATCAGGGATGGAGAACTGCACATATTAGGAAGAAGCAAGATTGGCAAAATAAACTGAAAT 284
Query 351 ACTTGAGAATTGGGAGGAAAGAAGTTGAAGATCAAGACAAGGTTGAGGATTCAGCCATGG 410
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ACTTGAGAATTGGTAGGAAAGAAGTTGAAGATCAAGACAAGGTTGAGGATTCAGCCATGG 344
Query 411 CTGCCCCTTTCTATGACGAGAATTT-TTATATTCTTAAAGCAAAGCAAGAACAAGAAGCC 469
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 345 CTGCCCCTTTTTATGACGAGAATTTATT-TATTCTTAAAGCAAAGCAAGAACAAGAAGCC 403
Query 470 AAGGCATCTGATGTCGGCTGCATGGTAGAATCTCTAAATGCGGTTGATGCGAACAGCATT 529
||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||
Sbjct 404 AAGGCATCTGATGTCGGCTGCTTGGTAGAATCTCTAAATGCCGTTGATGCAAATAGCATT 463
Query 530 CCTCTGGCATCCGTTGTGAAGCAGCTGGCTGTAGCAATCGAAGCAGGAAAAAGGGCTAAG 589
|||| ||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||
Sbjct 464 CCTCCGGCATCCATTGTAAAGCAGCTGGCTGCAGCAATCGAAGCGGGAAAAAGGGCTAAG 523
Query 590 AATGTGAAAGACTTTGTTGCATCATCTGGAAGTTCATCACCAGTGAGGGAGAGGGGAGGC 649
| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 524 ACTGTGAAAGACTTTGTTGCATCGTCAGGAAGTTCATCACCAGTGAGGGAGAGGGGAGGC 583
Query 650 TTGAGCCTCTCTGCGGTGAAATCACTGGTTCTTGGTGAAAAAGAGGATAAGCTTGGTTTT 709
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 584 TTGAGCCTCTCTGCAGTGAAATCGCTGGTTCTTGGTGAAAAAGAGGATAAGCTTGGTTTT 643
Query 710 GATTCAGGAGATGAGGATAAACTTGTGTCTCTAATAAATGCCTTGTTTAATGTTGATAGT 769
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||
Sbjct 644 GATTCAGGAGATGAGGAAAAACTTGTTTCTCTAATAAATGCCTTGTTTAATATTGATAGT 703
Query 770 GGCTTTCTCAGCAGAAAGATTGTCTCTGATTTGGAGTCTCCGACCAACAGATCATCTTTT 829
||||| || |||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 704 GGCTTCCTTAGCAGAAAGATTGTCTCTGATTTGGAGTCTCCTACCAACAGACCATCTTTC 763
Query 830 GCAAAAGATCTTCATGCTGCTCCCCCTAGTAGTTTTGTTGTTAAGCTAGCTGAAGTAATT 889
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 764 GCAAAAGATCTTCATGCTGCTCCCCCTAGTAGCTTTGTTGTTAAGCTAGCTGAAGTAATT 823
Query 890 GGAAGTTTTACAACACCCAGGAGAATGGCTTTGTTCTGGTGCAGGGTGGTTGAAGAATTG 949
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 824 GGAAGTTTTACAACACCCAGGAGAATGGCTTTGTTCTGGTGCAAGGTGGTTGATGAATGG 883
Query 950 AGGAGAT-T-T-TG--GAACGAAGAGA-AACACATACCATGGATACCTCTGGACAATAAT 1003
| || | | | || | || |||| | |||||||||||||||||||||||||
Sbjct 884 A-TAGTTCTCTCTGTTG-TTGAGGAGATTTTGGA-ACCATGGATACCTCTGGACAATAAT 940
Query 1004 CCAGATTTGAAAAGTTGCCTACTGCACCAATGGTTACAGGTTATAAACTGTTGTCTTGCC 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 CCAGATTTGAAAAGTTGCCTACTGCACCAATGGTTACAGGTTATAAACTGTTGTCTTGCC 1000
Query 1064 AGGAAAGCCCGCAACGTAGCTGCTTCCGAAGCATTAGATGCGGTAATGAGGCAAGCCAGT 1123
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGGAAAGCACGCAGCGTAGCTGCTTCCGAAGCATTAGATGCGGTAATGAGGCAAGCCAGT 1060
Query 1124 TCTGCCAATGAAAAGTCAGACGTTTCAGAATCAATGGGTTCTCTTTTGTATGCTAAAAGT 1183
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1061 TCTGCCAATGAAGAGTCAGACGTTTCAGAAGCAACGGGTTCTCTTTTGTATGCTAAAAGT 1120
Query 1184 AACTCCGGGGAACTTATACTCCGTTTGGGCGTTTATAACCAAGTTGAGAACTTAACAATG 1243
|| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 1121 AATTCCGGGGAACTTATACTCCGCTTGGGCGTTTATCACCAAGTTGAGAACTTATCAATG 1180
Query 1244 TTGGAAACTGGTGAACCTGTGTATTCCCCAATAACACAGGAAGGTCCGCTGTTGACGGAA 1303
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1181 TTGGAAACTGGTGAACCTGTGTATGCCCCAATAACTCAGGAAGGTCCGCTGTTGACGGAA 1240
Query 1304 GATCTTATTAGAGAAACAGAGGAATTAGTACTTCGGACAGGGAGCATGGGGGCTGGATGT 1363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1241 GATCTTATTAGAGAAACAGAGGAATTAGTACTTCGGACAGGAAGCATGGGGGCTGGATGT 1300
Query 1364 TCTCAACTCTTGTCTGACATGCAGGCTTTCAAGGCAGCAAATCCTGGCTGTATTTTGGAA 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TCTCAACTCTTGTCTGACATGCAGGCTTTCAAGGCAGCAAATCCTGGCTGTATTTTGGAA 1360
Query 1424 GATTTTGTGAGATGGCACTCGCCACCAGACTGGACTGAAAATGGTAACATGTCTGGAGAT 1483
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 1361 GATTTTGTGAGATGGCATTCTCCACCAGACTGGACTGAAAATGGTAACTTGTCTGGAGAT 1420
Query 1484 GACTCTTCACCCGTTCGAGGTCAATTAAGTACCCGGATGCAGAAAGAAGGTAATTTATGG 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 GACTCTTCACCCGTTCGAGGTCAATTAAGTACCCGGATGCAGAAAGAAGGTAATTTATGG 1480
Query 1544 CGTGAGCTGTGGGAAACAGCTAAACCACTCCCTGCTGTTAAACAAGCACCTCTCTTTGAT 1603
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1481 CGCGAGCTGTGGGAAACAGCTAAACCACTCCCTGCTGTTAAACAAGCACCTCTCTTCGAT 1540
Query 1604 GAAGATTTAGCTGTAGAAGGAATCTTGAATTATTTGGAAGACATTCCAGCTGCTGAACTT 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 GAAGATTTAGCTGTAGAAGGAATCTTGAATTATTTGGAAGACATTCCAGCTGCTGAACTT 1600
Query 1664 TTTGAGCAGCTGTTTACTTCGCTAGTTTCCCTGGGGTTTGTGATGGTGGAGCCAGTTTTA 1723
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1601 TTCGAGCAGCTGTTTACTTCGCTACTTTCCCTGGGGTTTGTGATGGTGGAGCCAGTTTTA 1660
Query 1724 GCTACAAACGATGACTTGTCAAAGCTTTTCTTTGAATGCAAGGATTATGTAGTCGCTATT 1783
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1661 GCCACAAACGATGACTTGTCAAAGCTTTTCTTCGAATGCAAGGATTATGTAGTCGCTATT 1720
Query 1784 TGTCAGGGGGGCGCATGGACCGATAAGCTTGATGATCTATGCCAGGTATACGAGACCGTG 1843
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1721 TGTCAGGGGGGTGCATGGACCGATAAGCTTGATGATCTCTGCCAGGTATACGAGACCGTG 1780
Query 1844 GAAACAATGTTATTACGTCCAGAAGAAGTTTTGAGATCAATGAAACAAACAGAGGAGTCG 1903
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1781 GAAACAATGTTATTATGTCCAGAAGAAGTTTTGAGATCAATGAAACAAACAGAGGACTCG 1840
Query 1904 CCATCAAGTGGCAGCGAAACGAAACGGCGGTTTAAGCGGCTAGGTTTCATCTTTCGTGGT 1963
||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1841 CCATCAAGTGGGAGCGAAACGAAACGCCGGTTTAAGCGGCTCGGTTTCATCTTTCGAGGT 1900
Query 1964 AGTAAAGAAAGAAAGCAGACAAGAGTTCCATCAGAAACTGAACAGAAAAGCACCGAACCT 2023
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 AGTAAAGAACGAAAGCAGACAAGAGTTCCATCAGAAACTGAACAGAAAAGCACCGAACCT 1960
Query 2024 AGCCCACGCCAATCATTCTCTAGTCTTTTTGATGGCAAGTCGTCTCTGTTTTCAAAGAGA 2083
||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1961 AGCCCGCGCCAATCGTTCTCTAGTCTTTTTGATGGCAAGTCGTCTCTGTTTGCAAAGAGA 2020
Query 2084 CCTCCTAGACCTGAAAATGTGACGCTTGTCTGAATCCATATTATTTATTTGATTTGTTTC 2143
||||||||||| ||||||||||||||||||||| | | | |||||||||| |||||||||
Sbjct 2021 CCTCCTAGACCGGAAAATGTGACGCTTGTCTGATTTCTTCTTATTTATTTTATTTGTTTC 2080
Query 2144 ATCTGCTTTTAAGTCATTTCTCAGTTTTTTGTATTCTTCTTCTGGGGTTTTAGGTTGTTA 2203
|||||||||| ||||||||||||| ||||| | ||||| | ||| | |||||||||||||
Sbjct 2081 ATCTGCTTTTGAGTCATTTCTCAGCTTTTT-T-TTCTT-T-CTGAGTTTTTAGGTTGTTA 2136
Query 2204 AGTTGATCAATTGGTTGGTAACTGTAAAGTTATCTTATTTAAAACATTTCTGAAGG 2259
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2137 AGCTGATCAATTGGTTGGTAACTGTAAAGTTATCTCATTTAAAACATTTCTGAAGG 2192
> Ahg952638 jgi|Araly1|952638|scaffold_98900001.1
Length=235
Score = 281 bits (152), Expect = 1e-74
Identities = 161/165 (98%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 112 ACAGGTGCGCACGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 171
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 ACAGGTGCGCATGATAATGGAGACGGCGCCGCCGTCCTTGGTCTCTAAAGCTAGAACCGC 66
Query 172 CTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 231
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TTTCAATTCCGCCGCGGCTAAAGCGGAGCGCGTCTTCACTGATCTCAAATCTGATCGAGA 126
Query 232 GGAGGAGAAGCAATCGACGAGGAATGTGAATGACTCTCAGG-AGG 275
|||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 127 GGAGGAGAAGCAATCGACGAGGGATGTGAATGACTCTCAGGTAGG 171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86350585415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5