BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55070.1
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495590 jgi|Araly1|495590|fgenesh2_kg.8__1406__AT5G55070.1 2686 0.0
Ahg492108 jgi|Araly1|492108|fgenesh2_kg.7__1541__AT4G26910.1 1284 0.0
> Ahg495590 jgi|Araly1|495590|fgenesh2_kg.8__1406__AT5G55070.1
Length=1787
Score = 2686 bits (1454), Expect = 0.0
Identities = 1682/1787 (94%), Gaps = 36/1787 (2%)
Strand=Plus/Plus
Query 2 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTCTTTCGTGAC-TTGCTC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1 AAGGAAATAAGACACGTGTAAAATCCTCTGAATTTTCCATATTC-TTCGTGACTTTGCTC 59
Query 61 AAAGCAGAGAAAGGTCATATGCTTTTCTCCAGTTCCTCTCTCTGTCTATCTCTCTCCTCC 120
||||| |||||||||||||||||||||||||| | || |||||||||||
Sbjct 60 AAAGCTGAGAAAGGTCATATGCTTTTCTCCAG----------T-TC---CTCTCTCCTCC 105
Query 121 TTCAATAATTTCTGCAAACCCTAACTTTCTCATTCGGCGCTCAAGTTTC-TCTCCACC-C 178
|||||||||||||||||||||||| |||||||||||||||||||||||| ||| | || |
Sbjct 106 TTCAATAATTTCTGCAAACCCTAAATTTCTCATTCGGCGCTCAAGTTTCTTCT-CTCCAC 164
Query 179 CTTCGAGATTTGGTGCGATGATGTTGCGTGCTGTTTTTAGGAGAGCTTCCATTAGAGGCT 238
| || ||||||||||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 165 C-TCTAGATTTGGTGCGATGATGTTGCGTGCTCTTATTAGGAGAGCTTCCACGAGAGGCT 223
Query 239 CTTCTTCTGCTTCGGGATTGGGAAAATCAT-TGCAATCCTCTCGTGTTGCAGTGTCTGCT 297
|||||| ||||||||||||||||||||| | ||||||| |||||||||| || ||||||
Sbjct 224 CTTCTTGTGCTTCGGGATTGGGAAAATC-TCTGCAATCTTCTCGTGTTGTAGCGTCTGCC 282
Query 298 CAATTTCATTCTGTTTCAGCAACAGAGACGTTGGTGCCTCGTGGAAACCATGCTCATAGC 357
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||| ||||
Sbjct 283 CAATTTCATTCTGTTTCAGCTACTGAGACGTTGGTACCTCGTGGAAACCATGCTCGTAGC 342
Query 358 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTATTATCAACGGTTAC 417
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 343 TTCCATCACCGTTCTTGTCCAGGGTGTCCAGACTGTTCAAGGACTGTTTTCAACGGTTAC 402
Query 418 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CAAGGCACAGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGATGTCGTG 462
Query 478 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACTGATGGCACCCTAGCCGCCTTTCTG 537
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 463 GAAGCTGTTGTGCCACACATGGGTGAATCAATCACCGATGGAACCCTAGCCACCTTTCTG 522
Query 538 AAGAAACCTGGCGATAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 597
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAGAAACCTGGTGACAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAACTGACAAG 582
Query 598 GTTACAATAGATATTGCTAGCCCAGCAAGTGGTGTGATCCAAGAGTTTCTAGTCAAGGAA 657
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 583 GTTACAATAGATATTGCTAGCCCAGCAAGTGGAGTGATCCAAGAGTTTCTAGTCAAGGAA 642
Query 658 GGAGATACTGTTGAACCAGGAAACAAGGTTGCAAGAATTTCTACATCTGCGGATGCTGTG 717
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 643 GGAGACACTGTTGAACCAGGAAACAAGGTTGCTAGAATTTCTACATCTGCGGATGCTGTG 702
Query 718 TCTCATGTGGCACCCTCAGAAAAGGCACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 777
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 703 TCTCATGTTGCACCCTCAGAAAAGACACCAGAGAAACCTGCTCCCAAGCCTTCTCCTCCT 762
Query 778 GCTGAGAAGCCCAAAGTTGAAAGTACCAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 837
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 763 GCTGAGAAGCCCAAAGTTGAAAGTACTAAAGTTGCAGAGAAACCCAAGGCACCATCACCG 822
Query 838 CCACCTCCACCGCCATCCAAACAGTCAGCTAAAGAACCGCAGCTTCCACCTAAGGATAGG 897
| ||| |||||||| | |||||||||||||||||||||||||| || ||||||||||||
Sbjct 823 CAACCGCCACCGCC--C-AAACAGTCAGCTAAAGAACCGCAGCTCCCTCCTAAGGATAGG 879
Query 898 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGTTGAAAGACTCT 957
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 880 GAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCAACTAGGCTGAAAGACTCT 939
Query 958 CAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 1017
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CAAAACACTTTTGCTTTGCTGACAACTTTCAATGAAGTTGATATGACTAATCTGATGAAG 999
Query 1018 CTCCGATCTCAGTACAAGGATGCTTTTCTTGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1077
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1000 CTCCGATCTCAGTACAAGGATGCTTTTTTTGAAAAGCACGGAGTGAAGTTGGGGCTTATG 1059
Query 1078 TCTGGTTTCATTAAGGCTGCTGTTAGTGCCCTCCAGCACCAACCTGTAGTAAATGCAGTT 1137
|||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1060 TCTGGTTTCATTAAAGCCGCTGTTAGCGCCCTCCAGCACCAACCAGTAGTAAATGCAGTT 1119
Query 1138 ATCGATGGAGATGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1197
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 ATCGACGGGGACGATATCATTTACAGAGACTACGTGGATATCAGTATCGCTGTTGGTACC 1179
Query 1198 TCTAAGGGTCTTGTAGTTCCAGTCATAAGAGATGCTGACAAAATGAACTTTGCTGACATA 1257
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1180 TCTAAGGGTCTTGTGGTTCCAGTCATAAGAGATGCTGATAAAATGAACTTTGCTGACATA 1239
Query 1258 GAGAAAACAATAAACGGTCTCGCTAAGAAGGCTACTGAAGGAACCATATCAATCGATGAG 1317
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct 1240 GAGAAAACAATAAACGGTCTTGCTAAGAAGGCTAATGAAGGAACCATATCAATCGACGAG 1299
Query 1318 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 ATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTATGGAAGTCTTATAAGCACT 1359
Query 1378 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCAATTGTGCAACGTCCA 1437
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1360 CCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCATTCGATTGTGCAACGTCCA 1419
Query 1438 ATGGTTGTGGGAGGAAGCGTAGTTCCGAGGCCAATGATGTATGTCGCGCTGACTTACGAT 1497
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1420 ATGGTTGTGGGAGGAAGCGTAGTACCGAGGCCAATGATGTATGTCGCACTGACTTACGAT 1479
Query 1498 CATAGGCTAATTGATGGAAGAGAGGCTGTGTATTTCTTGCGCCGTATTAAGGATGTTGTG 1557
|||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1480 CATAGGCTGATTGATGGAAGAGAGGCTGTGTATTTCCTGCGCCGTATCAAGGATGTTGTG 1539
Query 1558 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCCAAGACAGAAGAGATCATA 1617
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 1540 GAAGATCCTCAGAGGCTTCTTCTCGACATATGATAAAGATCTAAGACAGGAGAGATCATA 1599
Query 1618 AGTTTCTGTCTTTTTACCAGTTTCCTTTCAGGT--A---AAACCATTACGGATACTGCAA 1672
||||||||||||||||||||||||| ||||||| | |||||| ||| |||| |||||
Sbjct 1600 AGTTTCTGTCTTTTTACCAGTTTCCGTTCAGGTTCAGGTAAACCACTACAGATATTGCAA 1659
Query 1673 TCTGCAAATGATGCTT-TGA-AAAAAGAACGAAACtttttttttGGAGTTTTCTTAATAG 1730
|||||||||||| ||| ||| ||||| ||||||||||||||| |||||| ||||||||
Sbjct 1660 TCTGCAAATGATACTTCTGAGAAAAA-AACGAAACTTTTTTT--GGAGTTC-CTTAATAG 1715
Query 1731 TTTTAAGAGTTTTTGCCGGGCGAGGAAAGCATCGGTGTATTGAGTTT 1777
|| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1716 TTCCAAGAGTTTTTACCGGGCGAGGAAAGCATCGGTGTATACAGTTT 1762
Score = 63.9 bits (34), Expect = 4e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1798 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1831
||||||||||||||||||||||||||||||||||
Sbjct 1754 ATACAGTTTGAACAAAATGTTACAATTTTGACTT 1787
> Ahg492108 jgi|Araly1|492108|fgenesh2_kg.7__1541__AT4G26910.1
Length=1759
Score = 1284 bits (695), Expect = 0.0
Identities = 1194/1431 (83%), Gaps = 49/1431 (3%)
Strand=Plus/Plus
Query 183 GAGATTTGGTGC-GATGATGTTGCGTGCTGTTTTTAGGAGAGCTTCCATTAGAGGCTCTT 241
|||||| ||| | |||||||||||||||||| | ||||||||| ||| || ||||||||
Sbjct 87 GAGATTCGGTACAAATGATGTTGCGTGCTGTTATAAGGAGAGCTGCCAGTAAAGGCTCTT 146
Query 242 CTTCTGCTTCGGGATTGGGAAAATCATTGCAATCCTCTCGTGTTGCAGTGTC-TGCTCAA 300
| || ||||| ||| ||||||||| ||||||| ||||||||||| | || | | |||
Sbjct 147 C-TC--CTTCGTTATTCGGAAAATCACTGCAATCTTCTCGTGTTGCTGCATCTTCCCCAA 203
Query 301 --TTTCAT-TCTGTTTCAGCAACAGAGACGTTGGTGCCTCGTGGAAACCATGCTCATAGC 357
|| | | | ||||| ||||| | | || ||| | ||||||| ||||||| ||||
Sbjct 204 GCTTGC-TAAGAGGTTCAGAAACAGGGGCATTTCTGCATTGTGGAAATCATGCTCGTAGC 262
Query 358 TTCCATCACCGTT-C-TTGTCCAGGGTGTCCAGACT-GTTCAAGGACTATTATCAACG-G 413
|| ||| ||| || | ||| ||| | | | ||| | | | | | |||| || |
Sbjct 263 TTTCATAACC-TTGCTTTG-CCA-GCAG-GGA-ACTCGGGC-ATCTCGA-GATCAGCGAG 315
Query 414 -TTACCAAGGCAC-AGCCCTGCAAAGATGGGTCAGGCCCTTTTCATCTGATAGTGGGGAT 471
||| | | | |||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct 316 TTTA-GTTTCCTCTA-CCCTACAAAGATGGGTCAGGCCTTTTTCATCTGAAAGTGGAGAT 373
Query 472 GTC-GTGGAAGCTGTTGTGCCACACATGGGTGAATCAATCACTGATGGCACCCTAGCCGC 530
| ||||||||||||||||| || ||||| ||||||||||| ||||||||| ||||| |
Sbjct 374 -ACTGTGGAAGCTGTTGTGCCTCATATGGGGGAATCAATCACCGATGGCACCTTAGCCAC 432
Query 531 CTTTCTGAAGAAACCTGGCGATAGAGTAGAAGCTGATGAGGCTATTGCACAAATTGAAAC 590
|||||||||||||||||| || ||||| | |||||||||||||||||||||||||||||
Sbjct 433 CTTTCTGAAGAAACCTGGTGAGAGAGTCCAGGCTGATGAGGCTATTGCACAAATTGAAAC 492
Query 591 TGACAAGGTTACAATAGATATTGCTAGCCCAGCAAGTGGTGTGATCCAAGAGTTTCTAGT 650
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 493 TGATAAGGTGACAATAGATATTGCTAGCCCAGCAAGTGGTGTAATCCAAGAGTTTCTAGT 552
Query 651 CAAGGAAGGAGATACTGTTGAACCAGGAAACAAGGTTGCAAGAATTTCTACA-TCTGCGG 709
||| ||||||||||| || |||||||||| |||||| || | || || | | |||| ||
Sbjct 553 CAAAGAAGGAGATACGGTAGAACCAGGAACCAAGGTCGCTATTATATC-AAAGTCTGAGG 611
Query 710 ATGCTGTGTCTCATGTGGCACCCTCAGAAAAGGCACCAGAGAAACCTGCTCCCAAGCCTT 769
|||||| |||||||| | ||||| | ||| ||||||| | ||| | |||||||||
Sbjct 612 ATGCTGCATCTCATGTTACCCCCTCCCAGAAGATACCAGAGGCATCTGATGCCAAGCCTT 671
Query 770 CTCCTCCTGC------T--G-AGAAGCCCAAAGTTGAAAGTAC-CAAAGTTGCAGAGAAA 819
|||||||||| | | ||||||||||||| |||||| | | || |||||||||
Sbjct 672 CTCCTCCTGCTGAAGATAAGCAGAAGCCCAAAGTGGAAAGTGCTC-CTGTAGCAGAGAAA 730
Query 820 CCCAAGGCACCATCACCGCCACCTCCACCGCCATCCAAACAGTCAGCTAAAGAACCGCAG 879
||||| ||||||| || || ||||| ||| ||||||| || |||||||||||||||
Sbjct 731 CCCAAAGCACCAT--CC-TCA---CCACCTCCACCCAAACAATCTGCTAAAGAACCGCAG 784
Query 880 CTTCCACCTAAGGATAGGGAAAGACGGGTTCCTATGACAAGACTTCGCAAACGGGTGGCA 939
|| || |||||||| || ||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 785 CTCCCTCCTAAGGAAAGAGAAAGACGGGTTCCTATGACAAGACTTCGTAAAAGGGTTGCA 844
Query 940 ACTAGGTTGAAAGACTCTCAGAACACTTTTGCGTTGCTGACAACTTTCAATGAAGTTGAT 999
|| || |||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 845 ACAAGATTGAAAGACTCTCAAAATACTTTCGCATTGCTGACAACTTTCAATGAAGTTGAT 904
Query 1000 ATGACTAATCTGATGAAGCTCCGATCTCAGTACAAGGATGC-TTTTCTTGAAAAGCACGG 1058
||||| ||| |||||||||||||||| || ||||||||||| |||| | ||||| || ||
Sbjct 905 ATGACAAATTTGATGAAGCTCCGATCCCAATACAAGGATGCATTTTAT-GAAAAACATGG 963
Query 1059 AGTGAAGTTGGGGCTTATGTCTGGTTTCATTAAGGCTGCTGTTAGTGCCCTCCAGCACCA 1118
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 964 AGTGAAGTTGGGGCTTATGTCTGGATTCATTAAAGCTGCTGTTAGTGCCCTCCAGCATCA 1023
Query 1119 ACCTGTAGTAAATGCAGTTATCGATGGAGATGATATCATTTACAGAGACTACGTGGATAT 1178
||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1024 ACCAGTTGTAAATGCAGTTATCGATGGGGATGATATCATATACAGAGACTATGTGGATAT 1083
Query 1179 CAGTATCGCTGTTGGTACCTCTAAGGGTCTTGTAGTTCCAGTCATAAGAGATGCTGACAA 1238
|||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||| ||
Sbjct 1084 CAGTATTGCTGTTGGTACCTCTAAGGGACTTGTAGTACCAGTCATAAGAGGTGCTGATAA 1143
Query 1239 AATGAACTTTGCTGACATAGAGAAAACAATAAACGGTCTCGCTAAGAAGGCTACTGAAGG 1298
|||||||||||| || |||||||| || |||||| || || |||||||| | ||||||
Sbjct 1144 AATGAACTTTGCCGAGATAGAGAAGACGATAAACACACTTGCGAAGAAGGCAAATGAAGG 1203
Query 1299 AACCATATCAATCGATGAGATGGCAGGAGGATCATTCACAGTATCAAATGGTGGTGTCTA 1358
||||||||| || ||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct 1204 AACCATATCCATAGATGAGATGGCTGGAGGATCATTCACCGTTTCAAATGGCGGTGTCTA 1263
Query 1359 TGGAAGTCTTATAAGCACTCCTATCATCAACCCTCCTCAGTCTGCTATTCTTGGAATGCA 1418
||||||||| ||||||||||| ||||| |||||||||||||||||||| || || |||||
Sbjct 1264 TGGAAGTCTCATAAGCACTCCGATCATTAACCCTCCTCAGTCTGCTATACTCGGTATGCA 1323
Query 1419 TTCAATTGTG-CAACGTCCAATGGTTGTGGGAGGAAGCGTAGTTCCGAGGCCAATGATGT 1477
|| |||||| || |||||||||||||| |||||||||||||| || || ||||||||||
Sbjct 1324 CTCGATTGTGTCA-CGTCCAATGGTTGTAGGAGGAAGCGTAGTGCCAAGACCAATGATGT 1382
Query 1478 ATGTCGCGCTGACTTACGATCATAGGCTAATTGATGGAAGAGAGGCTGTGTATTTCTTGC 1537
| ||||| || || || ||||| ||||| |||||||| ||||||||||| || ||| |||
Sbjct 1383 ACGTCGCACTTACGTATGATCACAGGCTGATTGATGGTAGAGAGGCTGTCTACTTCCTGC 1442
Query 1538 GCCGTATTAAGGATGTTGTGGAAGATCCTCAGAGGCTTCTTCTCGACATAT 1588
||||| | |||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 1443 GCCGTGTCAAGGATGTTGTGGAGGATCCACAAAGGCTTCTTCTTGACATAT 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75113963140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5