BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55080.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357761 jgi|Araly1|357761|fgenesh1_pg.C_scaffold_8001548 828 0.0
Ahg941554 jgi|Araly1|941554|scaffold_602098.1 479 1e-134
> Ahg357761 jgi|Araly1|357761|fgenesh1_pg.C_scaffold_8001548
Length=711
Score = 828 bits (448), Expect = 0.0
Identities = 518/552 (94%), Gaps = 4/552 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTTACCTAACCAACAAAACGTCGATT-TACCAACCTTCAAACTTCTCATTGTTGG 59
||||||||| ||||| ||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 1 ATGGCTTTATCTAACGAACAAAACGTCGATTGT-CCAACCTTCAAGCTTCTCATTGTTGG 59
Query 60 TGATGGAGGCACTGGAAAAACCACCTTTCTCAAGAGACATCTGACTGGGGAATTTGAGCA 119
|||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 60 TGATGGAGGCTCTGGAAAAACCACCTTTTTGAAGAGACATCTGACTGGGGAATTTGAGCA 119
Query 120 TAATAC-TGAACCTACTCTTGGTGTGGATATTTATCCTTTAGATTTCTTCACTAACCGCG 178
||| | |||||||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 120 GAAT-CATGAACCTACTGTTGGGGTGGAGGTTTATCCTTTAGATTTCTTCACTAACCGCG 178
Query 179 GCAAGATCCGTTTCGAATGCTGGGATACTGCTGGACAAGAGAAATATAGTGGTCTCAAGG 238
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 179 GCAAGATCCGTTTTGAATGCTGGGATACTGCTGGACAAGAGAAGTATAGTGGTCTAAAGG 238
Query 239 ATGCATACTACATCCATGGTCAATGTGCGATAATTATGTTTGATGTCACAGCACGGCACA 298
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||
Sbjct 239 ATGCATACTACATCCATGGTCAATGTGCAATAATCATGTTTGATGTCACCGCACGGAACA 298
Query 299 CATACATGAACATTGATAGATGGTACCGTGATCTCCGCAGGGTGTGCAAGAACATTCCGA 358
||||||||||| | || | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 299 CATACATGAACGTAGACACATGGTACCGTGATCTCCGCAGGGTATGCAAGAACATTCCGA 358
Query 359 TTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCACGTAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCATGTAT 418
Query 419 CGTACCACAGGAAGAAGTGTCTGCAGTACTATGAGATGTCTGCGAAGAACAATTGCAATT 478
||| ||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 419 CGTTCCACAGGAAGAAGGGTCTGCAGTACTATGAGATGTCTACGAAGAGCAATTGCAATT 478
Query 479 TTGAGAAACCCTTTTTGTATCTTGCTAGAAGAATTGCTGGAGACGCAAAACTTTCCTTTG 538
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 479 TTGAGAAACCCTTTTTGTATCTTGCTAGAAGACTTGCTGGAGACGCAAAACTATCCTTTG 538
Query 539 TGGAGTCACCAG 550
||||||||||||
Sbjct 539 TGGAGTCACCAG 550
> Ahg941554 jgi|Araly1|941554|scaffold_602098.1
Length=707
Score = 479 bits (259), Expect = 1e-134
Identities = 462/559 (83%), Gaps = 18/559 (3%)
Strand=Plus/Plus
Query 1 ATGGCT-TTACCTAACCAACAAAACGTCGATTTA-CCAACCTTCAAACTTC-TCATTGTT 57
|||||| || |||||||| |||| |||||| ||| || | |||||| | || |||| |||
Sbjct 21 ATGGCTCTT-CCTAACCAGCAAACCGTCGA-TTACCCTAGCTTCAAGC-TCGTCATCGTT 77
Query 58 GGTGATGGAGGCACTGGAAAAACCACCTTTCTCAAGAGACATCTGACTGGGGAATTTGAG 117
|||||||||||||| || ||||| || ||| | ||||||||||| |||||||| ||||||
Sbjct 78 GGTGATGGAGGCACAGGGAAAACAACTTTTGTGAAGAGACATCTTACTGGGGAGTTTGAG 137
Query 118 CATAA-TACTGAACCTACTCTTGGTGTGGATATTTATCCTTTAGATTTCTTCACTAACCG 176
| || || |||||||||| |||||||||| || ||||||| ||||||||||| ||| |
Sbjct 138 AAGAAGTA-TGAACCTACTATTGGTGTGGAGGTTCATCCTTTGGATTTCTTCACAAACTG 196
Query 177 CGGCAAGATCCGTTTCGAATGCTGGGATACTGCTGGACAAGAGAAATATAGTGGTCTCAA 236
|||||||||||||| | |||||||||||||||||||||||||||| | |||| ||||
Sbjct 197 TGGCAAGATCCGTTTTTACTGCTGGGATACTGCTGGACAAGAGAAATTTGGTGGCCTCAG 256
Query 237 GGATGCATACTACATCCATGGTCAATGTGCGATAATTATGTTTGATGTCACAGCACGGCA 296
||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||| |||
Sbjct 257 GGATGGATACTACATCCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCT 316
Query 297 CACATACATGAACATTGATAGATGGTACCGTGATCTCCGCAGGGTGTGC-AAGAACATTC 355
|||||||| ||| || | |||| ||||||||||| |||||||||| || ||||| |
Sbjct 317 CACATACAAGAATGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAA-AACATCC 375
Query 356 CGATTGTTCTGTGTGGTAACAAAGTTGATGTGCCGAGTAGACAAATCAAGCCGAAGCACG 415
|||||||||||||||| |||||||| |||||| || || ||| | ||| | ||||| |
Sbjct 376 CGATTGTTCTGTGTGGGAACAAAGTCGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGG 435
Query 416 T-ATCGTACCACAGGAAGAAGTGTCTGCAGTACTATGAGATGTCTGCGAAGAACAATTGC 474
| | | | ||||||||||||| |||||||||||||||||| || || |||| ||| | |
Sbjct 436 TGA-CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTAC 494
Query 475 AATTTTGAGAAACCCTTT-TTGTATCTTGCTAGAAGAATTG-CTGGAGACGCAAAACTTT 532
|| || ||||| || ||| ||||| |||||||| | || || | |||||| |||||| ||
Sbjct 495 AACTTCGAGAAGCC-TTTCTTGTACCTTGCTAGGA-AACTGGCGGGAGAC-CAAAACCTT 551
Query 533 C-CTTTGTGGAGTCACCAG 550
| |||||| ||||||||||
Sbjct 552 CACTTTGTCGAGTCACCAG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5