BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55090.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495591 jgi|Araly1|495591|fgenesh2_kg.8__1407__AT5G55090.1 1969 0.0
> Ahg495591 jgi|Araly1|495591|fgenesh2_kg.8__1407__AT5G55090.1
Length=1324
Score = 1969 bits (1066), Expect = 0.0
Identities = 1249/1337 (93%), Gaps = 14/1337 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAACAAAACTGGATAAGAGGACCAATCATAGGTCGAGGCTCAACAGCTACTGTC 60
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAGGAACTAAACTGGATAAGAGGACCAATCATAGGCCGAGGCTCAACAGCTACTGTC 60
Query 61 TCACTTGGAATCACAAATTCCGGTGACTTCTTCGCCGTCAAATCCGCCGAGTTTTCTTCA 120
||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TCACTTGCAATCACAAACTCCGGTGACTTCTTCGCCGTCAAATCCACCGAGTTTTCTTCA 120
Query 121 TCGGCGTTTTTGCAGAGAGAACAATCGATTTTGTCGAAGTTGAGCTCTCCTTACATAGTC 180
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 121 TCGGCGTTTTTGCAGAGAGAACAATCGATTTTATCGAATTTGAGCTCTCCTTATATAGTC 180
Query 181 AAGTACATTGGTTCTAATGTAACGAAGGAGAACGACAAGTTGATGTATAATCTCTTAATG 240
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 181 AAGTACATTGGTTCTAATGTAACGACGGAGAACGACAAATTGATGTATAATCTCTTGCTG 240
Query 241 GAGTATGTTTCCGGTGGGAGTCTTCACGATTTGATCAAGAATTCCGGCGGGAAGTTACCG 300
|| ||||||||||| |||||| | ||||||||||| |||||||||||||||||||| |||
Sbjct 241 GAATATGTTTCCGGCGGGAGTATGCACGATTTGATGAAGAATTCCGGCGGGAAGTTGCCG 300
Query 301 GAGCCGTTGATTAGATCCTACACACGTCAGATATTGAAAGGTTTGATGTATCTTCATGAT 360
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 GAGCCGGTGATTAGATCCTACACGCGTCAGATATTAAAAGGTTTGATGTATCTTCATGAT 360
Query 361 CAAGGAATCGTTCATTGCGATGTGAAGAGCCAGAATGTGATGATCGGAGGAGAGATTGCG 420
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CAAGGTATTGTTCATTGCGATTTGAAGAGCCAGAATGTGATGATCGGAGGAGAGATTGCA 420
Query 421 AAGATCGTCGATTTGGGTTGTGCTAAAACGGTGGAAGAGAATGAGAACTTGGAATTTTCC 480
|||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 421 AAGATCGTTGATTTGGGCTGTGCTAAAACGGTGGAAGAGGATGAGAATTTGGAATTTTCC 480
Query 481 GGTACACCGGCGTTTATGTCACCGGAGGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCT 540
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GGTACACCGGCGTTTATGTCGCCGGAAGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCT 540
Query 541 GATGTTTGGGCTTTGGGGTGTACGGTGATAGAGATGGCTACAGGGTCAAGTCCTTGGCCG 600
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 541 GATGTATGGGCTTTGGGGTGTACGGTGATAGAGATGGCTACTGGGACAAGTCCTTGGCCG 600
Query 601 GAGCTAAACGACGTCGTTGCTGCTATTTATAAGATTGGTTTCACCGGCGAGTCGCCGGTG 660
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 601 GAGTTAAACGACGTCGTTGCTGCGATTTATAAGATTGGTTTCACCGGTGAGTCGCCGGAG 660
Query 661 ATTCCGGTTTGGTTATCGGAGAAAGGTCAAGACTTTTTGAGGAAGTGTTTGAGAAAAGAT 720
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 661 ATTCCGGTTTGGTTATCGGATAAAGGTCAAGACTTTTTGAGGAAATGTTTGAGAAAAGAT 720
Query 721 CCGAAACAGAGATGGACTGTTGAAGAATTGCTTCAACATCCGTTTCTCGACGAAGAAGAC 780
| ||||||||||||| |||| ||||||||||||||||||||||||| || |||||||
Sbjct 721 TCAAAACAGAGATGGAGTGTTCAAGAATTGCTTCAACATCCGTTTCTTGATGAAGAAG-- 778
Query 781 AACGACAGTGACCAAACTGGTAACTGTCTGAATTCTTCATCTCCTAGTACTGTGTTGGAT 840
||||| ||| || || |||| |||||||||||||||||||| |||||||||||||||
Sbjct 779 -ACGAC---GACGAAGCTCGTAATTGTCTGAATTCTTCATCTCCAAGTACTGTGTTGGAT 834
Query 841 CAACGG-TTTTGGGATTTATGTGAAACTTCGAGAAGTAGATTCATTAAAGAGGATCACGA 899
||| || ||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 835 CAA-GGTTTTTGGGATTTATGTGAAACTTCAAGAAGTCGATTCATTAAAGCGGATCACGA 893
Query 900 AGACCCATTTGCAAATTCTACAAATTTCTTATGGGATGACGATTCTTTACCGGGTGATCG 959
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 894 AGACCCATTTGCAAATTCTACAAATTTCTTATGGGAT---GATTCGTTACCGGGTGATCG 950
Query 960 GATCAAGAAACTCGCCGGAGACGAGAGTTCCGGTGAACCAGACTGGGAAACGAACGGTTG 1019
||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||
Sbjct 951 GATCAAGAAACTCGCCGGAGATGAGAATTCCGGTGAACTAGAGTGGGAAACGAACGGTTG 1010
Query 1020 GATTGAAGTAAGGGGAGAGATAGAGAAACGTAACGAGGAAGAAGATGAGAATTGCGTTGA 1079
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1011 GATTGAAGTTAGAGGAGAGATAGAGAAACGTAACGAAGAAGAAGATGAGAATTGCGTTGA 1070
Query 1080 AGCAACGTCATTGGAGGAGGACGAAGAAGAAGTGGGAGGATTTGAGAATTGGATCTGGGA 1139
|||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||
Sbjct 1071 AGCAACGTCATTGGAGGA-G--GAAGAAGAAGTGGGAGGATTTGAGAATTGGATCTTGGA 1127
Query 1140 TCAACAAGACAGCTTGTTCTTGGAATATTCCCCTGAGGACAACATTTATTATTTTTACTC 1199
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1128 TCAACAAGACAGCTTGTTCTTGGAATATTCCCCTGAGGACAACATTAATTATTTTTACTC 1187
Query 1200 TTATTATAACATCTTTGATGAAGATATAATTCTATATTATGATCATCTTGAAGATTGTTT 1259
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1188 TTATAATAACATCTTTCATGAAGATATAATTCTATATTATGATCATCTTGAAGATGGTTT 1247
Query 1260 TGTACTAAAATTTGATGATAATAATAAGAAGAtttttttCTTTAGCCACATTACAAATTC 1319
|||||||||| |||||||||||||||||| ||| |||||||||||||||| ||| |||
Sbjct 1248 TGTACTAAAAGATGATGATAATAATAAGAAAATTCGTTTCTTTAGCCACATTTCAAGTTC 1307
Query 1320 TTGTTTTGAGATTACTA 1336
|||||||||||||||||
Sbjct 1308 TTGTTTTGAGATTACTA 1324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5