BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55100.2
Length=2893
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495592 jgi|Araly1|495592|fgenesh2_kg.8__1408__AT5G55100.1 3834 0.0
Ahg359633 jgi|Araly1|359633|fgenesh1_pg.C_scaffold_527000001 1471 0.0
> Ahg495592 jgi|Araly1|495592|fgenesh2_kg.8__1408__AT5G55100.1
Length=2636
Score = 3834 bits (2076), Expect = 0.0
Identities = 2407/2561 (94%), Gaps = 45/2561 (2%)
Strand=Plus/Plus
Query 109 ATCACACAATGGATCTAGAGATTGTTGGTCGTCACGCTCTCTTTTTCGACGATGATTCGA 168
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1 ATCACACAATGGATCTGGAGATTGTTGGTCGTCACGCTCTCTTTTTTGACGACGATTCGA 60
Query 169 TGGCAACGTTTGTCAACTCTCCGACGGCGCTCGTTGACTGGAACAGCCTCTTTATTGACC 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGCAACGTTTGTCAACTCTCCGACGGCGCTCGTTGACTGGAACAGCCTCTTTATTGACC 120
Query 229 GCTACGATGTTCGTCAtctcctctcttctcctcctcctccACGTATCAAACGCCGTCGTC 288
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 GCTACGATGTTCGTCATCTCCTCTCTTCTCCTCCTCCCCCACGTATCAAACGCCGTCGTC 180
Query 289 CGAATTCAAACGATGCTGACTTGGAATCGGAGCTCGATCACGAGCGTTATCTAGATTTAC 348
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 181 CGAATTCAAACGATGCTGACTTGGAATCGGAGCTCGATCACGAGCGTTATTTTGATTTAC 240
Query 349 CGTCGGAATCTCCATCTCCGTCGGATGATGATGAACACGATATGAATGAGGATTCAGCAA 408
||||||||||||||||||||||||||||||| | | ||||||||||||| | ||||||||
Sbjct 241 CGTCGGAATCTCCATCTCCGTCGGATGATGA-G-A-ACGATATGAATGATGTTTCAGCAA 297
Query 409 ATACAAAT-GCGGATGGTTATCGTGCTGTCTCTTTTTCATATGGAAGCTCTAGTGATGTC 467
|||||||| || ||||||||||| |||||| | ||| |||| |||||||| |||||||||
Sbjct 298 ATACAAATGGC-GATGGTTATCGCGCTGTCCCCTTTGCATACGGAAGCTCCAGTGATGTC 356
Query 468 AATGACCAGAAAAATGCTGCTGATATGGAATCTGGATTTCACCCGCCTTTCCCCGTGCCT 527
| ||||||| ||| | ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 357 AGTGACCAG--AAA-GATGCTGATATGGGATCTGGATTTCAGCCGCCTTTCCCCGTGCCT 413
Query 528 GATTACTTACGTCAAAACCTGCCTCCAACTGAGAAATTACATCAGATTATCACTAGGACT 587
||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 414 GATTATTTACTTCAAAACCTGCCTCCAACTGAGAAATTACATCAGATCATCACTAGGACG 473
Query 588 TCAAGTTTTGTAAGCAAACACGGTGGGCAATCTGAAATTGTCTTGAGAGTCAAACAAGGA 647
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 474 TCAAGCTTTGTAAGCAAACATGGTGGGCAATCTGAAATCGTCTTGAGAGTCAAACAAGGA 533
Query 648 GACAACCCTACATTTGGGTTCCTAATGCCAGACCATCATCTTCACCTTTACTTTAGGTTT 707
| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 534 GGCAACCCTACATTTGGGTTCTTGATGCCAGACCATCATCTTCACCCTTACTTTAGGTTT 593
Query 708 CTTGTTGACCATCAAGAGCTTTTGACAGGAAAGTCTTCTGTAGAAGAGAAAAAGAACGAA 767
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 594 CTTGTTGACCATCAAGAGCTTTTGACGGGAAAGTCTTCTGTAGAAGAGAAAAAGAACGAA 653
Query 768 AGTGAGAAGGATGGTGGAGCTTTGTCATTGCTTGGTTCGGTTTATGGGACTGTAGAAGAT 827
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 654 AGTGAGAAGGATGGTGGAGCTTTGTCCTTGCTTGGTTCGGTTTATGGGACTGTAGAAGAT 713
Query 828 GAAGATGCTAACGAAGAGTCTGCAAACGACTCCAAAACAAGTGAGTCCGCCAAAGGTGAT 887
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||
Sbjct 714 GAAGATGCTAACGAAGAGTCTGCAAATGACTCTAAAACAAGTGAGTCTGCCAAAGGCGAT 773
Query 888 GATGGTGTTAAGGTAACTGATTCCAATGGACCTGAAGGGTCGAAAGGAGCTGCAAAGATT 947
|||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 774 GATGGTGTTAAGGTAACTGATTCCAATGGACCCGAATGGTCGAAAGGAGCTGTAAAGATT 833
Query 948 GCCTCTAAGCATTCTCTGCCGTTGAATGATCATGCATCTTTCATAAAAAGAAATCCCTCT 1007
|||||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||
Sbjct 834 GCCTCTAAGCATTCTCTGCCGTTGAATGATCAGGCATCTGTCGTAAAAAGAAATCCTTCT 893
Query 1008 GTCAGCGCAGTAAATGTTGTAGAGAAGAAGCAG----AT-C-------AA---TACAGAA 1052
||||||||||||||||||||||||| ||||||| || | || |||||||
Sbjct 894 GTCAGCGCAGTAAATGTTGTAGAGAGGAAGCAGATCAATACAGAAGATAATGCTACAGAA 953
Query 1053 AAACTTGTGACGTCTGATAAGTCGCAACCCAAGCTTGAACTGCAGATTGTGGAGCCGACT 1112
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 954 AAACTTTTGACGTCTGATAAGTCGCAACCCAAGCTTGAACTGCAGATTGTGGAGCCGTCT 1013
Query 1113 ACTGAGATGAAAAGAGTGATTGATAAGATAGTAGACTTCATTCAAAAGAACGGGAAAGAA 1172
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1014 ACTGAGATGAAAAGAGTGATTGATAAGATAGTAGACTTCATCCAAAAGAACGGGAAAGAA 1073
Query 1173 CTAGAGGCTACTCTTGTTGCACAGGATGTGAAATACGGGATGTTTCCATTCTTACGTCCA 1232
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1074 CTAGAGGCTACTCTTGTTGCACAGGATGTGAAAAACGGAATGTTTCCATTCTTACGTCCG 1133
Query 1233 TCTAGCTTATACCATGCATATTATCGGAAGGTTCTCCAAGAAGCCGAAGAGTTAAAATCA 1292
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GCTAGCTTATACCATTCATATTATCGGAAGGTTCTCCAAGAAGCCGAAGAGTTAAAATCA 1193
Query 1293 GGTGACAAAGGCGTTATTATCAGAAAAGAAGACGTGAAGCAAGAGAAGATGGGCAATGCT 1352
||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1194 TGTGACAAAGGCGTCATTACCAGAAAGGAAGACGTGAAGCAAGAGAAGATGGGCAATGCT 1253
Query 1353 GTAAAAGATAGCAAACACGGGTTTGGGAGTGTTTTACCAGATGATTCTGCCAAGAAAGAG 1412
||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GTAAAAGATGGCAAATATGCGTTTGGGAGTGTTTTACCAGATGATTCTGCCAAGAAAGAG 1313
Query 1413 AAACTAAAAATGGTTAGTGACAAACCAAAGGTCGAGTTGCACAATGAACCATTCAAGCCT 1472
||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1314 AAACTAAAAGTTGTTAGTGACAAACCAAAGGTCGAGTTGCACAACGAATCATTCAAGCCT 1373
Query 1473 GTCCAACCGCAGATGAGGGTCAATGTGGATGCGAATACTGCTGCTGCTATTCTTCAAGCG 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GTCCAACCGCAGATGAGGGTCAATGTGGATGCGAATACTGCTGCTGCTATTCTTCAAGCG 1433
Query 1533 GCTAGAAGAGGCATAAGGAATCCCCAGTTGGGGATTCTAACAGGCAAACCCATGGATGAG 1592
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1434 GCTAGAAGAGGCATAAGGAATCCCCAGTTGGGGATCCTATCAGGCAAACCCATGGATGAG 1493
Query 1593 ACTTCTCAGACCCTTGGAAATGATGTGA-GTTACCCTTCATCTAAGTCCCCTGATTTGGC 1651
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1494 ACTTCTCAGAGCCTTGGAAATGATG-GAAGTTACCCTTCATCTAAGTCCCCTGATTTGGC 1552
Query 1652 CAAATCTACAGGTCAATCACTCTCTGGCTCGACTGCTGCTAGTGAAGCTGATTCTTCTGA 1711
||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 1553 CAAATCTTCAGGTCAATCGCTCTCTGGCTCGACTGCTCCTAGTGAAGCTGATTCATCTGA 1612
Query 1712 AGCAGGCTTGTCTAAAGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTT 1771
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 AGCAGGCTTGTCTAAGGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTT 1672
Query 1772 TGTGGCCAAGTTAAAACCTGATGCGCAGCCAGTTCAACAAGCTGAACCGTCGCGAAGCAT 1831
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 1673 TGTGGCCAAGTTAAAACCTGATGCGCACCCTGTGCAACAAGCTGAACCGTCGCGAAGCAT 1732
Query 1832 ATCAGTCGAACCGTTGGACTCTGGGATTTCTGGATTAGGTGCTAAGGCTGCCAAAGAAAG 1891
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1733 ATCAGTTGAACCGTTGGACTCTGGGATTTCTGGATTAGGTGCTAATGCTGCCAAAGAAAG 1792
Query 1892 AGACAGTAGCTCGATTCCATATGTAGCTGAGTCAAAACTAGCGGATGATGGTAACAGTGA 1951
|||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||
Sbjct 1793 AGACAGTAGCTCGATTCCATCTGTAGCTGAGACAAAACTAGCAGATGATGGTAACAGTGA 1852
Query 1952 AAGACGATCAAAGAGGAATTACCGTTCGAGATCACAGAGAGATGAAGATGGTAAGATGGA 2011
||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1853 AAGACGACCAAAGAGGAATTACCGTTCGAGATCACATAGAGATGAAGATGTTAAGATGGA 1912
Query 2012 ACAAG--GA-G-A-A-GAGGAAGAGAGCAGCATGGACGAAGTTACAGAAGAAACCAAGAC 2065
||||| || | | | |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1913 ACAAGAAGAAGGAGAAGAGGAAGAGAGCAGCATGGATGAAGTGACAGAAGAAACCAAGAC 1972
Query 2066 TGATAAGAAGCATTCATGTAGTAGAAAACGGCATA--A---A----CATAAGACACGATA 2116
||||||||||||||||| ||||||||||||||||| | | ||||||||||||||
Sbjct 1973 TGATAAGAAGCATTCATCTAGTAGAAAACGGCATATTAGGCATAAACATAAGACACGATA 2032
Query 2117 CTCTTCCAAGGACAGACATTCTCGGGACAAGCACAAGCATGAGAGCTCCTCAGATGATGA 2176
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2033 CTCTTCCAAGGACAGACATTCTCGGGACAAGCACAAGCATGCGAGCTCCTCGGATGATGA 2092
Query 2177 GTATCACAGTCGTTCGCGTCATAGACACAGACACAGCAAATCTTCAGATAGGCATGAGCT 2236
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2093 GTATCACAGCCGTTCACGTCATAGACACAGATACAGCAAATCTTCAGATAGGCATGAGCT 2152
Query 2237 TTATGATTCTTCTGATAATGAGGGTGAGCACCGACACAGATCCAGTAAGCATAGCAAAGA 2296
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2153 ATATGATTCTTCTGATAACGAGGGTGAGCACCGACACAGATCTAGTAAGCATAGCAAAGA 2212
Query 2297 CGTTGATTATTCTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGA-AAAGC 2355
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 2213 CGTTGATTATTCTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGATAAA-C 2271
Query 2356 ACCGTGATTCATCTGATGATGAACATCATCAC--CA-CCGACACAGATCCAGTAGACGCA 2412
| ||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 2272 ATCGTGATTCATCTGATGATGAACATCATCATTACAACCGACACAGATCCAGTAGGCGCA 2331
Query 2413 AGCACGAGGACTCTTCAGACGTTGAGCATGGTCATCGTCACAAGTCTAGTAAACGTATAA 2472
| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 2332 AACACGAGGACTCTTCAGAAGATGAGCATGGTCATCGACACAAGTCTAGTAAACGTATAA 2391
Query 2473 AGAAAGATGAGAAAACAGTGGAAGAGGAGACTGTTTCAAAGTCAGATCAGTCTGATCTTA 2532
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2392 AGAAAGATGAGAAAACAGTGGAAGAGGAGGCTGTTTCAAAGTCAGATCAGTCTGATCTTA 2451
Query 2533 AAGCATCTCCTGGAGATAACATCCCGTATCTGCAAAATGAACCATCTCAAGTTTCGGATG 2592
|||| ||||||| ||||||||||| ||| | || ||| |||||| |||||||||||||||
Sbjct 2452 AAGCTTCTCCTGAAGATAACATCCAGTACCCGCGAAACGAACCAACTCAAGTTTCGGATG 2511
Query 2593 AGCTAAGAGCCAAAATCCGTGCCATGTTAGCTGATACCTTG 2633
|||||||||||||||||||||||||||||||||||||||||
Sbjct 2512 AGCTAAGAGCCAAAATCCGTGCCATGTTAGCTGATACCTTG 2552
> Ahg359633 jgi|Araly1|359633|fgenesh1_pg.C_scaffold_527000001
Length=1335
Score = 1471 bits (796), Expect = 0.0
Identities = 928/989 (94%), Gaps = 20/989 (2%)
Strand=Plus/Plus
Query 1663 GTCAATCACTCTCTGGCTCGACTGCTGCTAGTGAAGCTGATTCTTCTGAAGCAGGCTTGT 1722
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 2 GTCAATCGCTCTCTGGCTCGACTGCTCCTAGTGAAGCTGATTCATCTGAAGCAGGCTTGT 61
Query 1723 CTAAAGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTTTGTGGCCAAGT 1782
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTAAGGAGCAGAAGTTGAAGGCAGAAAGATTGAAACGTGCAAAAATGTTTGTGGCCAAGT 121
Query 1783 TAAAACCTGATGCGCAGCCAGTTCAACAAGCTGAACCGTCGCGAAGCATATCAGTCGAAC 1842
|||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||
Sbjct 122 TAAAACCTGATGCGCACCCTGTGCAACAAGCTGAACCGTCGCGAAGCATATCAGTTGAAC 181
Query 1843 CGTTGGACTCTGGGATTTCTGGATTAGGTGCTAAGGCTGCCAAAGAAAGAGACAGTAGCT 1902
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 182 CGTTGGACTCTGGGATTTCTGGATTAGGTGCTAATGCTGCCAAAGAAAGAGACAGTAGCT 241
Query 1903 CGATTCCATATGTAGCTGAGTCAAAACTAGCGGATGATGGTAACAGTGAAAGACGATCAA 1962
||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |||
Sbjct 242 CGATTCCATCTGTAGCTGAGACAAAACTAGCAGATGATGGTAACAGTGAAAGACGACCAA 301
Query 1963 AGAGGAATTACCGTTCGAGATCACAGAGAGATGAAGATGGTAAGATGGAAC------AAG 2016
||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||
Sbjct 302 AGAGGAATTACCGTTCGAGATCACATAGAGATGAAGATGTTAAGATGGAACAAGAAGAAG 361
Query 2017 GAGAAGAGGAAGAGAGCAGCATGGACGAAGTTACAGAAGAAACCAAGACTGATAAGAAGC 2076
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 362 GAGAAGAGGAAGAGAGCAGCATGGATGAAGTGACAGAAGAAACCAAGACTGATAAGAAGC 421
Query 2077 ATTCATGTAGTAGAAAA---C------GGCATAAACATAAGACACGATACTCTTCCAAGG 2127
|||||| |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 422 ATTCATCTAGTAGAAAACGGCATATTAGGCATAAACATAAGACACGATACTCTTCCAAGG 481
Query 2128 ACAGACATTCTCGGGACAAGCACAAGCATGAGAGCTCCTCAGATGATGAGTATCACAGTC 2187
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 482 ACAGACATTCTCGGGACAAGCACAAGCATGCGAGCTCCTCGGATGATGAGTATCACAGCC 541
Query 2188 GTTCGCGTCATAGACACAGACACAGCAAATCTTCAGATAGGCATGAGCTTTATGATTCTT 2247
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 542 GTTCGCGTCATAGACACAGATACAGCAAATCTTCAGATAGGCATGAGCTATATGATTCTT 601
Query 2248 CTGATAATGAGGGTGAGCACCGACACAGATCCAGTAAGCATAGCAAAGACGTTGATTATT 2307
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 602 CTGATAACGAGGGTGAGCACCGACACAGATCTAGTAAGCATAGCAAAGACGTTGATTATT 661
Query 2308 CTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGA-AAAGCACCGTGATTCA 2366
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 662 CTAAGGACAAGCGTAGCCATCATCACAGATCCAGGAAGCATGATAAA-CATCGTGATTCA 720
Query 2367 TCTGATGATGAACATCATCAC--CA-CCGACACAGATCCAGTAGACGCAAGCACGAGGAC 2423
|||||||||||||||||||| || |||||||||||||||||| ||||| |||||||||
Sbjct 721 TCTGATGATGAACATCATCATTACAACCGACACAGATCCAGTAGGCGCAAACACGAGGAC 780
Query 2424 TCTTCAGACGTTGAGCATGGTCATCGTCACAAGTCTAGTAAACGTATAAAGAAAGATGAG 2483
|||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 TCTTCAGAAGATGAGCATGGTCATCGACACAAGTCTAGTAAACGTATAAAGAAAGATGAG 840
Query 2484 AAAACAGTGGAAGAGGAGACTGTTTCAAAGTCAGATCAGTCTGATCTTAAAGCATCTCCT 2543
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 AAAACAGTGGAAGAGGAGGCTGTTTCAAAGTCAGATCAGTCTGATCTTAAAGCTTCTCCT 900
Query 2544 GGAGATAACATCCCGTATCTGCAAAATGAACCATCTCAAGTTTCGGATGAGCTAAGAGCC 2603
| ||||||||||| ||| | || ||| |||||| ||||||||||||||||||||||||||
Sbjct 901 GAAGATAACATCCAGTACCCGCGAAACGAACCAACTCAAGTTTCGGATGAGCTAAGAGCC 960
Query 2604 AAAATCCGTGCCATGTTAGCTGATACCTT 2632
|||||||||||||||||||||||||||||
Sbjct 961 AAAATCCGTGCCATGTTAGCTGATACCTT 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109204732415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5