BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55110.1 Length=492 Score E Sequences producing significant alignments: (Bits) Value Ahg950163 jgi|Araly1|950163|scaffold_802050.1 782 0.0 Ahg492113 jgi|Araly1|492113|fgenesh2_kg.7__1546__AT4G26880.1 169 2e-41 > Ahg950163 jgi|Araly1|950163|scaffold_802050.1 Length=532 Score = 782 bits (423), Expect = 0.0 Identities = 469/492 (95%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 1 ATGGCCCATTTCATGAAGCTACTCGTGACAATTGCATTAACAACCGTGGTCACAATCGCC 60 |||||||| ||||||||| |||||||||||||||||||||||||||| |||| ||||||| Sbjct 21 ATGGCCCAATTCATGAAGTTACTCGTGACAATTGCATTAACAACCGTAGTCATAATCGCC 80 Query 61 ATCGTCACCACCAAAACCACCACCAAGACCGCAACATTTGCTCTCGAAGACCCTTTCAAG 120 ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 81 ATCATCACCACCAAAACCACCACCAAGACCGCAACCTTTGCTCTCGAAGACCCTTTCAAG 140 Query 121 GACCTTACACCACCAGGAACGATCAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC 180 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 141 GACCTTACGCCACCAGGAACGATTAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC 200 Query 181 GACAAGGGTAAAGAACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC 240 ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 201 GACCAGGGTAAAGGACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC 260 Query 241 AATGAAATCTGTAGCAGCAGCGATTACAGCACAGGAGCAAACGCTACAATGGCTTGTTGC 300 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 261 AATGAAATCTGTAGCAGCAGCGATTACAGCACCGGAGCAAACGCTACAATGGCTTGTTGT 320 Query 301 AACAACAAGTGTATGGATTTATCAACCGACGACAAAAACTGCGGTTTATGTAAGAACAAA 360 ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 321 AACAACAAGTGTATGGATTTATCTTCCGACGACAAAAACTGCGGTGCGTGTAAAAACAAA 380 Query 361 TGCAAGTTCGGGCAAACGTGTTGTCGTGGTCAGTGCGTTTACGTGGCCTACGATAAACGC 420 ||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct 381 TGCAAGTTCGGACAAACGTGTTGTCGTGGTCAGTGCGTATACGTTGCTTACGATAAACGT 440 Query 421 CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT 500 Query 481 AACTACGCGTGA 492 |||||||||||| Sbjct 501 AACTACGCGTGA 512 > Ahg492113 jgi|Araly1|492113|fgenesh2_kg.7__1546__AT4G26880.1 Length=420 Score = 169 bits (91), Expect = 2e-41 Identities = 179/222 (81%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 273 AGG-AGCAAACGCTACAATGGCTTGTTGCAACAACAAGTGTATGGATTTATCAACCGACG 331 ||| ||| ||| | || ||| | || |||||||||||||| || || | | | ||| Sbjct 201 AGGAAGC-AACTCGACGATGACATGCTGCAACAACAAGTGCATAGACGTGGCCAGTGACA 259 Query 332 ACAAAAACTGCGGTTTATGTAAGAACAAATGCAAGTTCGGGCAAACGTGTTGTCGTGGTC 391 || | ||||| || ||||||||||||||||||||| || ||||||||||| || | Sbjct 260 ACGATAACTGTGGCGCGTGTAAGAACAAATGCAAGTTCTCACAGACGTGTTGTCGCGGCC 319 Query 392 AGTGCGTTTACGTGGCCTACGATAAACGCCATTGCGGTGAGTGTAACCAT-CGTTGCGAT 450 | || ||||||||||| ||||| ||||||||||| || ||||||||||| || || || Sbjct 320 AATGTGTTTACGTGGCTTACGACAAACGCCATTGTGGACAGTGTAACCATCCG-TGTGAG 378 Query 451 CTCGGCGAGTTCTGCGTCTACGGTCTCTGTAACTACGCGTGA 492 ||||||||||| |||||||||||||||||||||||||||||| Sbjct 379 CTCGGCGAGTTATGCGTCTACGGTCTCTGTAACTACGCGTGA 420 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17856815652 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5