BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55110.1
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950163 jgi|Araly1|950163|scaffold_802050.1 782 0.0
Ahg492113 jgi|Araly1|492113|fgenesh2_kg.7__1546__AT4G26880.1 169 2e-41
> Ahg950163 jgi|Araly1|950163|scaffold_802050.1
Length=532
Score = 782 bits (423), Expect = 0.0
Identities = 469/492 (95%), Gaps = 0/492 (0%)
Strand=Plus/Plus
Query 1 ATGGCCCATTTCATGAAGCTACTCGTGACAATTGCATTAACAACCGTGGTCACAATCGCC 60
|||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||||
Sbjct 21 ATGGCCCAATTCATGAAGTTACTCGTGACAATTGCATTAACAACCGTAGTCATAATCGCC 80
Query 61 ATCGTCACCACCAAAACCACCACCAAGACCGCAACATTTGCTCTCGAAGACCCTTTCAAG 120
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 81 ATCATCACCACCAAAACCACCACCAAGACCGCAACCTTTGCTCTCGAAGACCCTTTCAAG 140
Query 121 GACCTTACACCACCAGGAACGATCAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC 180
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 141 GACCTTACGCCACCAGGAACGATTAAGATCAGACCAAGTCGGTTCTTGGCAGAAAAAGTC 200
Query 181 GACAAGGGTAAAGAACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC 240
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GACCAGGGTAAAGGACCAAAAGCCCGTAACCCAAACGCAGCTGACCATTGCAACAAGGAC 260
Query 241 AATGAAATCTGTAGCAGCAGCGATTACAGCACAGGAGCAAACGCTACAATGGCTTGTTGC 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 261 AATGAAATCTGTAGCAGCAGCGATTACAGCACCGGAGCAAACGCTACAATGGCTTGTTGT 320
Query 301 AACAACAAGTGTATGGATTTATCAACCGACGACAAAAACTGCGGTTTATGTAAGAACAAA 360
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 321 AACAACAAGTGTATGGATTTATCTTCCGACGACAAAAACTGCGGTGCGTGTAAAAACAAA 380
Query 361 TGCAAGTTCGGGCAAACGTGTTGTCGTGGTCAGTGCGTTTACGTGGCCTACGATAAACGC 420
||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 381 TGCAAGTTCGGACAAACGTGTTGTCGTGGTCAGTGCGTATACGTTGCTTACGATAAACGT 440
Query 421 CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CATTGCGGTGAGTGTAACCATCGTTGCGATCTCGGCGAGTTCTGCGTCTACGGTCTCTGT 500
Query 481 AACTACGCGTGA 492
||||||||||||
Sbjct 501 AACTACGCGTGA 512
> Ahg492113 jgi|Araly1|492113|fgenesh2_kg.7__1546__AT4G26880.1
Length=420
Score = 169 bits (91), Expect = 2e-41
Identities = 179/222 (81%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 273 AGG-AGCAAACGCTACAATGGCTTGTTGCAACAACAAGTGTATGGATTTATCAACCGACG 331
||| ||| ||| | || ||| | || |||||||||||||| || || | | | |||
Sbjct 201 AGGAAGC-AACTCGACGATGACATGCTGCAACAACAAGTGCATAGACGTGGCCAGTGACA 259
Query 332 ACAAAAACTGCGGTTTATGTAAGAACAAATGCAAGTTCGGGCAAACGTGTTGTCGTGGTC 391
|| | ||||| || ||||||||||||||||||||| || ||||||||||| || |
Sbjct 260 ACGATAACTGTGGCGCGTGTAAGAACAAATGCAAGTTCTCACAGACGTGTTGTCGCGGCC 319
Query 392 AGTGCGTTTACGTGGCCTACGATAAACGCCATTGCGGTGAGTGTAACCAT-CGTTGCGAT 450
| || ||||||||||| ||||| ||||||||||| || ||||||||||| || || ||
Sbjct 320 AATGTGTTTACGTGGCTTACGACAAACGCCATTGTGGACAGTGTAACCATCCG-TGTGAG 378
Query 451 CTCGGCGAGTTCTGCGTCTACGGTCTCTGTAACTACGCGTGA 492
||||||||||| ||||||||||||||||||||||||||||||
Sbjct 379 CTCGGCGAGTTATGCGTCTACGGTCTCTGTAACTACGCGTGA 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17856815652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5