BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55120.1
Length=1874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950164 jgi|Araly1|950164|scaffold_802051.1 2019 0.0
Ahg492115 jgi|Araly1|492115|fgenesh2_kg.7__1548__AT4G26850.1 752 0.0
Ahg887372 jgi|Araly1|887372|Al_scaffold_0987_1 409 5e-113
> Ahg950164 jgi|Araly1|950164|scaffold_802051.1
Length=1330
Score = 2019 bits (1093), Expect = 0.0
Identities = 1249/1324 (94%), Gaps = 12/1324 (1%)
Strand=Plus/Plus
Query 410 ATTTGTGAGCAATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTATCGAATTATCAAA 469
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 10 ATTTGTGAGTAATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTGTCGAATTATCAGA 69
Query 470 AAGATGAGACAGTTGAAGAAGGTGGATGTGGTCGGAATTGTC-TGAGCAAGTGTTGCATC 528
||||||| || || |||||||||||||||||||||||||| | ||||||||||||| |||
Sbjct 70 AAGATGAAACGGTGGAAGAAGGTGGATGTGGTCGGAATTG-CTTGAGCAAGTGTTGTATC 128
Query 529 AATGGGGCAAGACTTCCTTTATATACCTGCAAGAATCTTGATAAATCCGTCGGAGAGAAC 588
|||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 129 AATGGGGCAAGACTTCCTTTATATACTTGCAAGAATCTTGATACATTCGTCGGAGAGAAG 188
Query 589 ACAGAATCTCCGGTGACGTTCCTCGAATCCT-TAGTTATTGGAGAGTGGGAAGATCGTTT 647
|||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 189 TTAGAATCTCCGGTGATGTTCCTCGAAT-CTCTAGTTCTTGGAGAGTGGGAAGATCGTTT 247
Query 648 CCAAAGAGGTCTTTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAA 707
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CCAAAGAGGACTTTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAA 307
Query 708 GTACGGTTTCATTGCGCAGCTGAATGAAGGTCGGCATCTCAAGAAGAGACCAACCGAGTT 767
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 308 GTACGGTTTCATTGCGCAGCTGAATGAAGGTCGTCATCTCAAGAAGAGACCAACCGAGTT 367
Query 768 CCGTGTTGACAAAGTTCTTCAACCATTTGATGGAAACAAATTCAATTTCACTAAAGTTGG 827
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 368 CTGTGTTGACAAAGTTCTTCAACCATTTGATGGAAACAAGTTCAATTTCACTAAAGTTGG 427
Query 828 TCAAGAAGAGTTGCTTTTCCAGTTTAAAGCTAGCACTAATGATGATGATAGTGAAATTCA 887
||||||||||||||||||||||||| ||||||||| ||| || ||||||||| |||| ||
Sbjct 428 TCAAGAAGAGTTGCTTTTCCAGTTTGAAGCTAGCAATAACGACGATGATAGTAAAATCCA 487
Query 888 GTTCTTGGCGAGTATGCCTCTAGACGCTGATAATTCTCCTAGCGTCGTTGCAATCAATGT 947
||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 488 GTTCTTGCCGAGTATCCCTCTAGACGCGGATAATTCTCCAAGCGTCGTTGCAATCAATGT 547
Query 948 GAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCA 1007
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 548 GAGTCCGATTGAGTATGGACATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTGCCTCA 607
Query 1008 AAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 608 AAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGCTAATCC 667
Query 1068 GTATTTCCGACTTGGATACAACAGTCTAGGCGCTTTCGCTACCATTAACCATCTTCACTT 1127
||||||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||
Sbjct 668 GTATTTCCGACTTGGATACAACAGTTTAGGAGCTTTTGCTACCATCAACCATCTTCACTT 727
Query 1128 TCAGGCTTACTATTTGGCAATGCAATTCCCGATAGAGAAAGCTTCTTCCTTGAAGATCAC 1187
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 728 TCAGGCTTACTATTTGGCAATGCAATTCCCGATTGAGAAAGCTTCTTCCTTGAAGATCAC 787
Query 1188 TACCACCAATAATGGCGTCAAAATCTCTAAACTCTTGAATTACCCTGTGAGAGGTCTTCT 1247
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 788 TACCACTAATAACGGCGTCAAAATCTCAAAACTCTTGAATTACCCTGTGAGGGGTCTTCT 847
Query 1248 AGTTGAAGGTGGAAACACCATTAAAGATCTCGCAGATACTGTATCAGACGCATCCGTTTG 1307
| |||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||
Sbjct 848 ATTTGAAGGTGGAAACTCCATTAAAGATCTCTCTGATACTGTATCAGATGCATCCGTTTG 907
Query 1308 TCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAACGAATCTT 1367
|||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||
Sbjct 908 TCTTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGATTCTGGAAAACAAATCTT 967
Query 1368 CCTTCTCCCTCAGTGTTACGCAGAGAAACAGGCTTTAGGAGAAGTTAGCTCAACGCTATT 1427
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 968 CCTTCTCCCTCAGTGTTACGCAGAGAAACAAGCTTTAGGAGAAGTTAGCTCAAAGCTATT 1027
Query 1428 GGATACGCAAGTGAATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAA 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 GGATACGCAAGTGAATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAA 1087
Query 1488 AGAAGACTATGAAGGAGCGTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCTTT 1547
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1088 AGAAGACTACGAAGGAGCTTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCGTT 1147
Query 1548 ATCAGAGGAGAGATTCAGAGAAGTTAACACTATGATATTTGATGCCATCGGTTTTAGTAG 1607
||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1148 ATCAGAGGAGAGATTCAAAGAAGTTAACACTATGATATTTGAGGCCATCGGATTTAGTAG 1207
Query 1608 TCACgaagaagaagaagaagaGGAGCTTGAAGAGCAGAATTCGATGAATGGTGGCAGCTT 1667
||||||||||||||| | | | ||||||||||||| ||||||||||||| |||||||
Sbjct 1208 TCACGAAGAAGAAGA-G--GTG---CTTGAAGAGCAGAGTTCGATGAATGGTAGCAGCTT 1261
Query 1668 CACAATAGTGCATTGTCCTTCAGTGAAAGAAGAGGCTGTCTCTAATTGAG-GC-GCTTTA 1725
|| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1262 CATAAGAGTGCATTGTCCTTCAGTGAAAGAAGAGGCTGTCTCTAATTGAGAGGTGCTTTA 1321
Query 1726 TAAC 1729
||||
Sbjct 1322 TAAC 1325
> Ahg492115 jgi|Araly1|492115|fgenesh2_kg.7__1548__AT4G26850.1
Length=1994
Score = 752 bits (407), Expect = 0.0
Identities = 788/971 (81%), Gaps = 29/971 (3%)
Strand=Plus/Plus
Query 596 CTCCGGTGACGTTCCTCGAATCCTTAGTTATTGGAGAGTGGGAAGATCGTTTCCAAAGAG 655
|||| ||| | || ||||| ||| | ||| | ||||||||||| ||| | ||||||||||
Sbjct 642 CTCCTGTGGCTTTTCTCGAGTCCCTCGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAG 701
Query 656 GTCTTTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAAGTACGGTT 715
| |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 702 GACTTTTTCGCTATGATGTCACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTT 761
Query 716 TCATTGCGCAGCTGAATGAAGGTCGGCATCTCAAGAAGAGACCAACCGAGTTCCGTGTTG 775
|| |||| ||||| || || ||||| || || |||||||| ||||| ||||||||||| |
Sbjct 762 TCGTTGCTCAGCTTAACGAGGGTCGTCACCTGAAGAAGAGGCCAACTGAGTTCCGTGTAG 821
Query 776 ACAAAGTTCTT-CAACCATTTGATGGAAACAAATTCAATTTCACTAAAGTTGGTCAAGAA 834
| ||| | || || | |||||||| | ||||||||| |||||||||||||| ||||||
Sbjct 822 A-TAAGGTGTTGCAGTCTTTTGATGGCACCAAATTCAACTTCACTAAAGTTGGCCAAGAA 880
Query 835 GAGTTGCTTTTCCAGTTTAAAGCTAGCACTAATGATGATGATAG-TGAAATTCAGTTCTT 893
|||||||| ||||||||| ||||| | | ||| ||| | || ||||||||||
Sbjct 881 GAGTTGCTCTTCCAGTTTGAAGCT-G-------G-TGAAGAT-GCCCAAGTTCAGTTCTT 930
Query 894 GGCGAGTATGCCTCTAGACGCTGATAATTCTCCTAGCGTCGTTGCAATCAATGTGAGTCC 953
| | |||||||| ||| |||| |||||||| | || ||||| |||||||| |||||
Sbjct 931 CCCTTGCATGCCTCTTGACCCTGAGAATTCTCCCAATGTTGTTGCCATCAATGTTAGTCC 990
Query 954 GATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGAT 1013
||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||
Sbjct 991 GATAGAGTATGGGCATGTGCTGCTGATTCCTCGTGTTCTTGACTGCTTGCCTCAGAGGAT 1050
Query 1014 TGATCACAAAAGCCTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGATAATCCGTATTT 1073
||||||||||||||||||||||| |||| ||||| ||||| ||| |||||| || ||
Sbjct 1051 CGATCACAAAAGCCTTTTGCTTGCAGTTCACATGGCTGCTGAGGCCTCTAATCCATACTT 1110
Query 1074 CCGACTTGGATACAACAGTC-TAGGCGCTTTCGCTACCATTAACCATCTTCACTTTCAGG 1132
| |||| || |||||||| | |||| ||||| || || || || ||||||||||||||||
Sbjct 1111 CAGACTCGGTTACAACAG-CTTAGGTGCTTTTGCCACGATCAATCATCTTCACTTTCAGG 1169
Query 1133 CTTACTATTTGGCAATGCAATTCCCGATAGAGAAAGCTTCTTCCTTGAAGATCACTACCA 1192
|||| || ||||| |||| ||||| | ||||||||| ||||| |||||| |||||||
Sbjct 1170 CTTATTACTTGGCCATGCCTTTCCCTCTGGAGAAAGCTCCTTCCAAGAAGATAACTACCA 1229
Query 1193 CCAATAATGGCGTCAAAATCTCTA-AAC-TCTTGAA-TTACCCTGTGAGAGGTCTTCTAG 1249
| || ||| ||||||||||| | | | || | || ||||||||||||| |||||||
Sbjct 1230 CTGTTAGTGGTGTCAAAATCTC-AGAGCTTC-T-AAGTTACCCTGTGAGAAGTCTTCTTT 1286
Query 1250 TTGAAGGTGGAAACACCATTAAAGATCTCGCAGATACTGTATCAGACGCATCCGTTTGTC 1309
|||||||||||| | | || |||| || | ||||||||||||||||| | ||||| |
Sbjct 1287 TTGAAGGTGGAAGCTCTATGCAAGAGCTATCCGATACTGTATCAGACGCCTGTGTTTGCC 1346
Query 1310 TTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGACTCTGGCAAA-C-GAATCTT 1367
|||||||||||||||||||||||||||||||||||||||| | ||| || | || ||||
Sbjct 1347 TTCAGAACAACAACATTCCTTTCAACATTCTCATCTCTGATTGTGG-AAGGCAGA-TCTT 1404
Query 1368 CCTTC-TCCCTCAGTGTTACGCAGAGAAACAGGCTTTAGGAGAAGTTAGCTCA-ACGCTA 1425
| || | || |||||||||||||||||||||||| |||| ||||| ||| | | | |
Sbjct 1405 C-TTGATGCCACAGTGTTACGCAGAGAAACAGGCTCTAGGTGAAGTAAGCCCGGAGG-TG 1462
Query 1426 TTGGATACGCAAGTGAATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGG 1485
||||| || |||||||| ||||| || |||||||| ||||| |||||||| ||||||||
Sbjct 1463 TTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGAAGAGG 1522
Query 1486 AAAGAAGACTATGAAGGAGCGTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCT 1545
||||| || || |||||||| ||||| || || || |||||| | || || |||| ||||
Sbjct 1523 AAAGAGGATTACGAAGGAGCTTCAGAGGATAACGCGTGGAGGCTCCTTGCAGAAGCTTCT 1582
Query 1546 TTATCAGAGGA 1556
| || |||||
Sbjct 1583 CTGTCGGAGGA 1593
Score = 172 bits (93), Expect = 6e-42
Identities = 159/187 (85%), Gaps = 19/187 (10%)
Strand=Plus/Plus
Query 150 GGTAATCGGTAATCACGGCTATTTACGGGATAAAGCCACGGCCT-TTGAGCTTTCATGTC 208
||| ||||| |||||||||||| ||||||| | ||||| | || |||| |||||||
Sbjct 122 GGTGATCGG-AATCACGGCTATACACGGGAT--A-TCACGGGGTGTT-AGCTCTCATGTC 176
Query 209 CA-A-----CG--A-AAGGGTTGTTTAATC-ATAACTAATCCTTTGCCTCACGGAGGACG 258
|| | || | ||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 177 CATATTGTTCGACAGAAGGGTTGTTTAATCGA-AACTAATCCTTTGCCGCACGGAGGACG 235
Query 259 TGGAGCTCTGCCGTCTGAAGGCGGCAGTCCCT-CCGATCTCCTCTTCCTCGCCGGAGGCG 317
||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct 236 TGGAGCTCTGCCGTCTGAAGGCGGCAG-CCCTTCCGATCTCCTCTTTCTCGCCGGAGGCG 294
Query 318 GTTCCAC 324
|||||||
Sbjct 295 GTTCCAC 301
> Ahg887372 jgi|Araly1|887372|Al_scaffold_0987_1
Length=291
Score = 409 bits (221), Expect = 5e-113
Identities = 258/276 (93%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 421 ATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTATCGAATTATCAAAAAGATGAGACA 480
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1 ATGTTGTTGAAGATCAAAAGAGTTCCAACAGTTGTGTCGAATTATCAGAAAGATGAAACG 60
Query 481 GTTGAAGAAGGTGGATGTGGTCGGAATTGTCT-GAGCAAGTGTTGCATCAATGGGGCAAG 539
|| |||||||||||||||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 61 GTGGAAGAAGGTGGATGTGGTCGGAATTG-CTTGAGCAAGTGTTGTATCAATGGGGCAAG 119
Query 540 ACTTCCTTTATATACCTGCAAGAATCTTGATAAATCCGTCGGAGAGAACACAGAATCTCC 599
||||||||||||||| |||||||||||||||| || |||||||||||| |||||||||
Sbjct 120 ACTTCCTTTATATACTTGCAAGAATCTTGATACATTCGTCGGAGAGAAGTTAGAATCTCC 179
Query 600 GGTGACGTTCCTCGAATCCTTAGTTATTGGAGAGTGGGAAGATCGTTTCCAAAGAGGTCT 659
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 180 GGTGACGTTCCTCGAATCTTTAGTTCTTGGAGAGTGGGAAGATCGTTTCCAAAGAGGACT 239
Query 660 TTTTCGCTATGATGTCACCGCCTGCGAAACCAAGGT 695
||||||||| ||||||||||||||||||||||||||
Sbjct 240 TTTTCGCTACGATGTCACCGCCTGCGAAACCAAGGT 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70390772760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5