BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55125.1
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950165 jgi|Araly1|950165|scaffold_802052.1 435 2e-121
> Ahg950165 jgi|Araly1|950165|scaffold_802052.1
Length=273
Score = 435 bits (235), Expect = 2e-121
Identities = 255/265 (96%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 132 AGTTGTTGGACAATGAAGAAAGGATTGCACCCACAAATGCAATGGATCTCTTATGTGACA 191
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 9 AGTTGTTGGACAATGAAGAAAGGATTGCACCCACAGATGCAATGGATCTCTTATGTGACG 68
Query 192 CAGAGCGGTAGATTGATGCACGTGATGATGACAAGAATCCACCATGTTGGCAAAGTTTAT 251
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 69 CAGAGCGGTAGACTGATGCACGTGATGATGACAAGAATCCACCATGTTGGCAAAGTCTAT 128
Query 252 CACTTTGGAGCTAAGCGTCAAATGGCTCAAAGCATTGGTCAGATTGCCAAGTTCAAGCGT 311
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 129 CACTTTGGAGCTAAGCGTCAGATGGCTCAAAGCATTGGTCAGATTGCCAAGTTCAAGCGT 188
Query 312 AGGTTTAACGAGCAAGAGGCAGAAGCTGCCGAGGAGAACAACAACGAGAACCAGAACAAG 371
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 189 AGGTTTAACGAGCAAGAGGCAGAAGCGGCCGAGGAGAATAACAATGAGAACCAGAACAAG 248
Query 372 TAGCTGTAAACCAACTCTTTTGTCT 396
|||||| |||||||||||||| |||
Sbjct 249 TAGCTGCAAACCAACTCTTTTATCT 273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22530643947
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5