BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55130.1
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950166 jgi|Araly1|950166|scaffold_802053.1 2281 0.0
> Ahg950166 jgi|Araly1|950166|scaffold_802053.1
Length=1440
Score = 2281 bits (1235), Expect = 0.0
Identities = 1367/1432 (95%), Gaps = 4/1432 (0%)
Strand=Plus/Plus
Query 37 TTGGTTCTCTAACATTGTCGTTATGATGTCCAACGGTGGTGATTCGTCGGAAATTGTCCG 96
||||||||||||||| ||||| |||||||| |||||||| |||||| |||||||||||||
Sbjct 1 TTGGTTCTCTAACATCGTCGTGATGATGTCGAACGGTGGAGATTCGCCGGAAATTGTCCG 60
Query 97 GGAACTGGAAGAGTTAAAGCTCAAGAAGGCAGAAATAGAGCACCGTATTTCGACCCTCGA 156
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAATTGGAAGAGTTAAAGCTCAAGAAGGCAGAAATAGAGCACCGTATTTCGACCCTCGA 120
Query 157 AGCTAAGCTCCAGGATACGGCGGCAGTTGAACTGTACGACGCCGTATCCAACGGTGACTC 216
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 121 AGCTAAGCTCCAGGATACGGCGGCGGTTGAACGGTACGACGCCGTATCCAACGGTGACTC 180
Query 217 TTATCTGACGGCACCGGAGCTTGAACATGGGTTATCTCCAGATCAGATTTACCGTTATAG 276
||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TTATCCAACGGCGCCGGAGCTTGAACATGGGTTATCTCCGGATCAGATTTACCGTTATAG 240
Query 277 TCGTCAACTGTTACTTCCTTCGTTTGCTGTTGAAGGGCAGTCAAATCTTTTGAAGTCTTC 336
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGTCAATTGTTACTCCCTTCGTTTGCTGTTGAAGGGCAGTCAAATCTTTTGAAGTCTTC 300
Query 337 GGTATTAGTTATTGGAGCAGGAGGACTAGGTTCACCTGCCTTATTGTATCTTGCAGCATG 396
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 AGTATTAGTTATTGGAGCTGGAGGACTGGGTTCACCTGCCTTATTGTATCTTGCAGCATG 360
Query 397 TGGTGTTGGTCAG-TTGGGTATTATCGATCATGATGTTGTAGAGCTCAACAATATGCATA 455
||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 361 TGGTGTTGGTC-GCTTGGGTATTATAGATCATGATGTTGTAGAGCTCAACAATATGCACA 419
Query 456 GGCAGATTATACACACAGAAGCATTTATTGGACATCCCAAAGTGAAATCTGCTGCTGCTG 515
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 GGCAGATTATACACACAGAAGCATTTATTGGTCATCCCAAAGTGAAATCTGCTGCTGCTG 479
Query 516 CTTGTCGCTCGATAAATTCAACGATCAAAGTTGATGAATATGTGGAAGCTCTTCGCACTT 575
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTGTCGCTCAATAAATTCGACGATCAAAGTTGATGAATATGTGGAAGCTCTTCGCACTT 539
Query 576 CCAATGCTTTGGAAATCCTCAGCCAATATGATATCATAGTCGATGCGACTGATAATCCTC 635
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 540 CCAATGCTTTGGAAATCCTTAGCCAATATGATATCATAGTAGATGCGACTGATAATCCTC 599
Query 636 CAAGCCGTTACATGATCAGTGATTGTTGTGTCTTGTTAGGAAAGCCTTTGGTGTCGGGTG 695
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||
Sbjct 600 CAAGCCGTTACATGATCAGCGATTGTTGTGTCCTGTTAGGAAAGCCTTTGGTTTCGGGTG 659
Query 696 CTGCGCTTGGTATGGAAGGGCAGCTTACGGTTTATAATCATAACGGAGGCCCGTGTTACC 755
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 660 CTGCACTTGGGATGGAAGGGCAGCTTACGGTTTATAATCACAACGGAGGCCCGTGTTACC 719
Query 756 GGTGTCTTTTTCCCACTCCTCCACCTACCTCAGCGTGCCAAAGATGTTCTGATAGTGGAG 815
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 720 GGTGTCTTTTTCCCACTCCTCCACCTACCTCAGCATGCCAAAGATGTTCTGATAGTGGAG 779
Query 816 TTCTTGGAGTAGTGCCAGGTGTTATTGGTTGTCTACAAGCGCTAGAGACAATTAAACTCG 875
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTCTTGGAGTAGTTCCGGGTGTTATTGGTTGTCTACAAGCGCTAGAGACAATTAAACTCG 839
Query 876 CAAGCCTGGTGGGAGAACCACTCTCTGAACGGATGCTTCTTTTTGATGCTTTATCAGCAA 935
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGAGCATGGTGGGAGAACCACTCTCTGAACGGATGCTTCTTTTTGATGCTTTATCAGCAA 899
Query 936 GGATGCGCATTGTCAAGATCAGAGGCAGGTCATCACAGTGCACCGTGTGTGGAGACAATT 995
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 900 GGATGCGCATTGTAAAGATCAGAGGCAGGTCATCACAGTGCATAGTGTGTGGAGACAATT 959
Query 996 CATCTTTCAATAAGCAAACTTTTAAAGATTTTGACTATGAGGACTTCACTCAATTTCCTT 1055
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 960 CATCTTTCAATAAGCAAACGTTTAAAGATTTTGACTATGAGGACTTCACCCAATTTCCTT 1019
Query 1056 TATTTGCGGGCCCATTGAACCTGCTTCCTGCAGAATCAAGAATTAGCAGCAAGGAGTTCA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TATTTGCGGGCCCATTGAACCTGCTTCCTGCAGAATCAAGAATTAGCAGCAAGGAGTTCA 1079
Query 1116 AAGAAATTCTTCAAAAGAAGGAACAACATGTTCTGCTCGATGTTCGACCTTCACATCACT 1175
|| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1080 AACAAATTCTTCAAAAGAAGGAACAGCATATTCTGCTCGATGTTCGACCTTCGCATCACT 1139
Query 1176 ATAAGATTGTCTCTCTCCCGGATTCACTCAACATCCCTCTTGCAAACTTAGAGACTCGGT 1235
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1140 ATAAGATTGTCTCTCTCCCGGATTCACTTAACATCCCTCTTGCAAACTTAGAGGCTCGGT 1199
Query 1236 TAAACGAGCTTACTTCAGCTCTTAAAGAAAAGGGAA-ATGGCCATGCGAACACTGAATCT 1294
||||||||||||||||||||||||||||||||| || | ||||||| ||||| | ||||
Sbjct 1200 TAAACGAGCTTACTTCAGCTCTTAAAGAAAAGG-AAGACGGCCATGTTAACACCGGATCT 1258
Query 1295 TGCACAAATCCTAGTGTCTTCGTTGTATGCAGACGCGGGAATGATTCACAAAGAGCTGTT 1354
||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||
Sbjct 1259 TGCACAAATCCTAGTGTCTACGTTGTTTGCAGACGCGGGAATGATTCACAGAGAGCTGTT 1318
Query 1355 CAATATCTTCGTGAGTCGGGTTTTGATTCGGCTAAGGATATAATTGGAGGACTGGAAGCT 1414
||||||||| |||| || ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1319 CAATATCTTTGTGAATCAGGTTTCGATTCAGCCAAGGATATAATTGGAGGACTGGAAGCT 1378
Query 1415 TGGGCAGCCAATGTCAACCCCAACTTCCCCACCTACTAGAGGGAAACTTTTT 1466
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1379 TGGGCAGCCAATGTCAACCCCAACTTCCCCACCTATTAGAGGGAAACTTTTT 1430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61744287145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5