BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55132.1
Length=413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331851 jgi|Araly1|331851|fgenesh1_pm.C_scaffold_8001194 231 2e-60
> Ahg331851 jgi|Araly1|331851|fgenesh1_pm.C_scaffold_8001194
Length=249
Score = 231 bits (125), Expect = 2e-60
Identities = 215/256 (84%), Gaps = 16/256 (6%)
Strand=Plus/Plus
Query 92 ATGGTTGCATCTCATCGATTACTTACGTTGATGGTGTTTGCTCTCCTCAC-CATACCTAT 150
|||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 1 ATGGTTTCATCTCATCGATTACTTACGTTGATGGTGTTTGTTCTCCTC-CTCATACCTAT 59
Query 151 GATTTCTGGA---CTAATTTCAGATAAATGTACGGAAGGATGTAAAAGC-ACAATAGGAT 206
|||||||||| | |||| |||||||||||||||| ||||||| |||| | ||| || |
Sbjct 60 GATTTCTGGAGGACAAATTACAGATAAATGTACGGAGGGATGTAGAAGCGA-AAT-GGCT 117
Query 207 -GCAAT--ACAAGATGCATGA-TGAGAGGCGGAGGGTATTGTGAAAGCGCTAAAATTCAC 262
||||| ||| ||| ||| | |||||| |||| ||||||||| |||| | |||||
Sbjct 118 TGCAATTTACAC--TGCTTGAAT-AGAGGCTTAGGGCATTGTGAAAAAGCTATACTTCAC 174
Query 263 GGGGCTGTTAAAATATTTTGTTGCTGCAACAATTATTCTAATTCTCCCATCTCCAGTCCG 322
|||||| | ||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 175 GGGGCTCCTGTAATTTTTTGTTGCTGCAATGAGTATTCTAATTCTCCCATCTCCAGTCCG 234
Query 323 GTCATCAATTGATTGA 338
||||| ||| ||||||
Sbjct 235 GTCATGAAT-GATTGA 249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14842524121
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5