BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55135.1

Length=377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917207 jgi|Araly1|917207|Al_scaffold_0008_1958                    488    1e-137


> Ahg917207 jgi|Araly1|917207|Al_scaffold_0008_1958
Length=339

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 318/343 (93%), Gaps = 8/343 (2%)
 Strand=Plus/Plus

Query  39   ATGTTGAGAAATTATGTGAACCCAAAATCAATCTCCAAGCCTAATATAACAACATCATGT  98
            |||||||||||||||||||||||||||||||||||||||| ||||||   || |||||||
Sbjct  1    ATGTTGAGAAATTATGTGAACCCAAAATCAATCTCCAAGCATAATAT---AAGATCATGT  57

Query  99   ATTTACTCTTTTTATCTCAAGAGAGGAAGTGCGAGTGGAGGGAGGGAAGAAGGAAGAGCT  158
            || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   ATATACTCTTTTTATCTTAAGAGAGGAAGTGCGAGTGGAGGGAGGGAAGAAGGAAGAGCT  117

Query  159  TCTTCGACGGCGGAGGAGTTCACAAGACAAGGT-GTTGCTAGCCAAACAGTTGAGAAGGC  217
             |||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||
Sbjct  118  CCTTCGACGGCGGAGGAGTTCACAAGACAAGGTTGTA-CTAGCCAAACAGTTGAGAAGGC  176

Query  218  TTTTGACGGAGCTGCGGTGGCGGTAAACGTCTCCGGTGATTCTGAGGCGGATGTGGAGAA  277
            |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct  177  TTTTGACGGAGCTGCGGTTGCGGTAAACGTCTCCGGTGATTCTGAGGAGGATGTGGAGAA  236

Query  278  GGTGAAAGAGGCGTTTTTAGATAAGAAAGACTATAATTATAAGAAGAGACCTGAGGATGA  337
            |||||||||||||||| |||| || ||||||||||||||||||||| ||  ||| |||||
Sbjct  237  GGTGAAAGAGGCGTTTATAGAGAACAAAGACTATAATTATAAGAAGGGAAATGATGATGA  296

Query  338  TGAT---GATGGTTTGCCTATCAACACGGCTAAAGGAATATAA  377
            ||||   |||||||| ||||||||||||| |||||||||||||
Sbjct  297  TGATAATGATGGTTTCCCTATCAACACGGTTAAAGGAATATAA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13468922917


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5