BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55140.1
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495599 jgi|Araly1|495599|fgenesh2_kg.8__1415__AT5G55140.1 998 0.0
> Ahg495599 jgi|Araly1|495599|fgenesh2_kg.8__1415__AT5G55140.1
Length=690
Score = 998 bits (540), Expect = 0.0
Identities = 653/705 (93%), Gaps = 17/705 (2%)
Strand=Plus/Plus
Query 18 AAACGCGAATCTCAAAGATTTTCCGAGCTCTGTTCGCCGTCTTGACTACACTCGT-CGAC 76
||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||
Sbjct 1 AAACGCGAATCTCAAAGATTTTCCGAGCTCTGTTCGCCGTCTTGAGTACAGTC-TACGAC 59
Query 77 GATCTCTTTCACCGGACTTCTCCCGTCTCTGTTTCCTCAAGAGAGATTGAGTGATAAAGG 136
|||||||||||||||||||||| |||||||||||| ||||| |||| |||||||||||||
Sbjct 60 GATCTCTTTCACCGGACTTCTCTCGTCTCTGTTTCTTCAAGGGAGAATGAGTGATAAAGG 119
Query 137 AGACaaaaaaaaaaaaGAATGAGTGGTTTTAGAGCTTTCAAAGC-ACAAGTGCCTATTGA 195
|||| |||||| |||||||||||||||||||| ||||| | |||||||||||||
Sbjct 120 AGAC-------AAAAAGGATGAGTGGTTTTAGAGCTTTTAAAGCGA-AAGTGCCTATTGA 171
Query 196 ATGGAGCCAGAGCTTGTACATAACCTTAGTAAGAGGTCTCCCTGGAACAAGGAAGCTTCA 255
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 172 ATGGAGCCAGAGCTTGTACATAACCTTAGTGAGAGGTCTCCCTGGAACCAGGAAGCTTCA 231
Query 256 CAGACGAACACTTGAAGCTATGGGACTTCGTAGATGTCATCGTACTGTTTTGCATTCAAA 315
||| ||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 232 CAGGCGAACGCTTGAAGCTATGGGACTTCGTAGATGCCATCGTACGGTTTTGCACTCAAA 291
Query 316 CAATTCATCCATTAGGGGAATGATTGATCAGGTTAAAAGGATGGTTGTTGTTGAAACAGA 375
||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 292 CAATTCATCCATTAGAGGAATGATTAACCAGGTTAAAAGGATGGTTGTTGTTGAAACAGA 351
Query 376 AGAAATGTACAATGCTCGTAAAGAAGCAGAAGCCAACCACAAAGCTTTGCGCCCGCCTCT 435
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AGAGATGTACAATGCTCGTAAAGAAGCAGAAGCCAACCACAAAGCTTTGCGCCCGCCTCT 411
Query 436 CGTTGTCAGTCATTCGAGTCCTGCAACAGATTCATCCAACATGTCTTGAGAGTACTTTCA 495
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 412 CGTTGTCAGTCATTCAAGCCCTGCAACAGATTCATCCAACTTGTCTTGAGAGTACTTTCA 471
Query 496 TAAGATGGTAAGCTCTTCTACCGTCAGTTCGATAAGATCCGCTTGGATATTGTAGGCGGC 555
||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 472 TAAGATGGTAATCTCTTCTACCGTCAGTTTGATAAGATCCGCTTG-ATATTGTAGGCGCC 530
Query 556 TTATGTTTAAGTTCTCTCTAAAGGTGTCCAGGAAGTAAACTAGTCCTAGACGCTTGATAA 615
||| |||||||||||| ||| | |||||||||||||| |||||||||||||||| ||||
Sbjct 531 TTAAGTTTAAGTTCTCAGTAA-GATGTCCAGGAAGTAA-CTAGTCCTAGACGCTTTATAA 588
Query 616 GAAATGTTGGTATCAGTGTGTTTGGTGCCTCTTTATGTTTTTTGTATACACTGGATACTT 675
||||||| ||||||||||||||||||||||||| |||||||| |||||||||| || |||
Sbjct 589 GAAATGTCGGTATCAGTGTGTTTGGTGCCTCTT-ATGTTTTT-GTATACACTGAATCCTT 646
Query 676 GTGTATGTTTTGCTCTCATTCTGTCAATCTCAAATCTATCGGttt 720
|||||||||| ||||||||| |||||||||||||||||| |||||
Sbjct 647 GTGTATGTTT-GCTCTCATTTTGTCAATCTCAAATCTATTGGTTT 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26686041900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5