BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55150.1 Length=1083 Score E Sequences producing significant alignments: (Bits) Value Ahg495600 jgi|Araly1|495600|fgenesh2_kg.8__1416__AT5G55150.1 1170 0.0 > Ahg495600 jgi|Araly1|495600|fgenesh2_kg.8__1416__AT5G55150.1 Length=1128 Score = 1170 bits (633), Expect = 0.0 Identities = 741/792 (94%), Gaps = 12/792 (2%) Strand=Plus/Plus Query 303 GAAACCCG-TTACCAAAAGCGTTACTTCTCTGCCTCCTTTGATATCTTTTGAGGATGTTC 361 |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 338 GAAACCCGTTTACCAAAAGCGTTACTTCTCTGCCACCTTTGATATCTTTTGAGGATGTTC 397 Query 362 AGCGGTTGCTTCAGTCTCAAGCCATCATTCCAGACTCTGAAGCCCTAAAGAACTTTATAA 421 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 398 AGCGGTTGCTTCAGTCTCAAGCCATCTTTCCAGACTCTGAAGCCCTAAAGAACTTTGTAA 457 Query 422 AGAAAGCAGTCTCTTCAACGAGTCTATTAGACGATGAATGGGTTGTGCTCGTAATCTACA 481 ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| Sbjct 458 AGAAAGCAGTCTCTTCAACAAGTTTATTAGACGATGAATGGGTTGTGCTCGTAATATACA 517 Query 482 ACACTGATAGGAAGCTAGCGTTCTGCAGACGCGGAGATAAACAATGGACGGATTTGGAGT 541 |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 518 ACACTGATAGAAAACTAGCGTTCTGCAGACGCGGAGATAAACAATGGACAGATTTGGAAT 577 Query 542 CTGTTGCCTCTTCTGTCGATGACATTGTGTTCTGCAATGGCGTCTTCTTTGCCATCGACA 601 ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 578 CTGTTGCCTCTGCTGTCGATGATATTGTGTTCTGCAATGGCGTCTTCTTTGCCATCGACA 637 Query 602 GACTCGGAGAGATATATCACTGTGAGCTTAGTGCTAACAACCCAAAAGCTACTCCTTTAT 661 || ||||||||||||||||||||||||||||| |||||| |||||||||| |||||| | Sbjct 638 GATTCGGAGAGATATATCACTGTGAGCTTAGTCCTAACAGTCCAAAAGCTATTCCTTTGT 697 Query 662 GCAGCACCTCGCCGTTTCGGTACGACTCTTGCAAGAAATACTTGGCAGAGTCGGATTACG 721 ||||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 698 GCAGCTCCTCACCGTTTCGGTATGACTCTTGCAAGAAATACTTTGCAGAGTCGGATTACG 757 Query 722 ACGAACTGTGGGTGGTCCTAAAGAAGCTGGAGCTTAACGACGATTGTGATTTCGAAACCT 781 | |||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| Sbjct 758 ATGAACTGTGGGTGGTTCTAAAGAAGCTGGAGCTTAATGACGATTGTGATTTCGCAACCT 817 Query 782 CTTTCGAGATTTACGAATTCAATCGCGAGACTAACGAATGGACAAAGGTGATGAGCTTGA 841 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 818 CTTTCGAGATTTACGAATTCAATCGCGAGACTAATGAATGGACAAAGGTGATAAGCTTGA 877 Query 842 GAGGAAAAGCTTTGTTCTTGAGCCCTCAAGGTAGATGTATAGCTGTTTTAGCAGGTGAGA 901 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 878 GAGGAAAAGCTTTGTTCTTGAGCCCTCAAGGTAGATGTATAGCGGTTTTAGCAGGTGAAA 937 Query 902 GAGGAT-T------TT--TCAAAGACAACTCAGTTTATTTCATTGATGGTGATGATCCAA 952 |||||| | || ||||||||||||||||||||||||||||||||||||| |||| Sbjct 938 GAGGATCTAGAGAATTCATCAAAGACAACTCAGTTTATTTCATTGATGGTGATGACCCAA 997 Query 953 GTGTAGGAGGA-TCAGGGCCTCAGAATCTGAGCGTTTTTGAATGGGAGAGTAAGCAAATC 1011 || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 998 GTATAGGAGGACT-AGGGCCTCAGAATCTGAGCGTTTTTGAATGGGAGAGTAAGCAAATC 1056 Query 1012 ATGAAAATTTACCAGCCAAGATCTTGGAATTGTCAGATGTTTTGGGTCACACCAACAGAC 1071 |||||||| || |||||||||||||||||||||||||||||||||||| |||| ||| | Sbjct 1057 ATGAAAATCTATCAGCCAAGATCTTGGAATTGTCAGATGTTTTGGGTCGCACCTACAAAT 1116 Query 1072 GTTCCTCAGTGA 1083 |||| ||||||| Sbjct 1117 GTTCTTCAGTGA 1128 Score = 472 bits (255), Expect = 3e-132 Identities = 287/303 (95%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 1 ATGGCTCTACCTTCTTCGTCGTGGTCAGAGTTTCTTCCGGAGCTTCTCAACACTGTATTC 60 |||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1 ATGGCTGTATCTTCTTCGTCGTGGTCAGAGTTTCTTCCGGAGCTTCTCAACGCTGTATTT 60 Query 61 CACAACCTAAACGACGCCAGAGACATTCTAAACTGTGCCACGGTCTGTTCTTCTTGGAAG 120 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 CACAACCTAAACGACGCCAGAGACATTCTAAACTGTGCCACCGTCTGTTCTTCTTGGAAG 120 Query 121 GATTCTTCTTCGGCCGTATACTACAGCCGGACGTTTTCTCCTTTTCTGTTTATTTCCCAT 180 ||||||||||| ||||||||||||||| || |||| |||||||||||||| |||||||| Sbjct 121 GATTCTTCTTCTGCCGTATACTACAGCAAGAAGTTTGCTCCTTTTCTGTTTGTTTCCCAT 180 Query 181 CTCTCTTCCAATGAAGAAATCCGATTCTCCGACCAGTTTAGAGTTTTGTCTCCGGGAAAG 240 ||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||| Sbjct 181 CTCTCTTCCAATGAAGATATCCGATTCTTCGATCAATTTAGAGTTTTGTCTCCGGGAAAG 240 Query 241 TTGGGTTTCTCAGGGAACCAACAAGCGTGGGTTTGTGGCAGTACACTAGGGTTTTTGTTG 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 241 TTGGGTTTCTCAGGGAACCAACAAGCGTGGGTGTGTGGCAGTACACTAGGGTTTTTGTTG 300 Query 301 ACG 303 ||| Sbjct 301 ACG 303 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40334046186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5