BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55150.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495600 jgi|Araly1|495600|fgenesh2_kg.8__1416__AT5G55150.1 1170 0.0
> Ahg495600 jgi|Araly1|495600|fgenesh2_kg.8__1416__AT5G55150.1
Length=1128
Score = 1170 bits (633), Expect = 0.0
Identities = 741/792 (94%), Gaps = 12/792 (2%)
Strand=Plus/Plus
Query 303 GAAACCCG-TTACCAAAAGCGTTACTTCTCTGCCTCCTTTGATATCTTTTGAGGATGTTC 361
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 338 GAAACCCGTTTACCAAAAGCGTTACTTCTCTGCCACCTTTGATATCTTTTGAGGATGTTC 397
Query 362 AGCGGTTGCTTCAGTCTCAAGCCATCATTCCAGACTCTGAAGCCCTAAAGAACTTTATAA 421
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 398 AGCGGTTGCTTCAGTCTCAAGCCATCTTTCCAGACTCTGAAGCCCTAAAGAACTTTGTAA 457
Query 422 AGAAAGCAGTCTCTTCAACGAGTCTATTAGACGATGAATGGGTTGTGCTCGTAATCTACA 481
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 458 AGAAAGCAGTCTCTTCAACAAGTTTATTAGACGATGAATGGGTTGTGCTCGTAATATACA 517
Query 482 ACACTGATAGGAAGCTAGCGTTCTGCAGACGCGGAGATAAACAATGGACGGATTTGGAGT 541
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 518 ACACTGATAGAAAACTAGCGTTCTGCAGACGCGGAGATAAACAATGGACAGATTTGGAAT 577
Query 542 CTGTTGCCTCTTCTGTCGATGACATTGTGTTCTGCAATGGCGTCTTCTTTGCCATCGACA 601
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 578 CTGTTGCCTCTGCTGTCGATGATATTGTGTTCTGCAATGGCGTCTTCTTTGCCATCGACA 637
Query 602 GACTCGGAGAGATATATCACTGTGAGCTTAGTGCTAACAACCCAAAAGCTACTCCTTTAT 661
|| ||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |
Sbjct 638 GATTCGGAGAGATATATCACTGTGAGCTTAGTCCTAACAGTCCAAAAGCTATTCCTTTGT 697
Query 662 GCAGCACCTCGCCGTTTCGGTACGACTCTTGCAAGAAATACTTGGCAGAGTCGGATTACG 721
||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 698 GCAGCTCCTCACCGTTTCGGTATGACTCTTGCAAGAAATACTTTGCAGAGTCGGATTACG 757
Query 722 ACGAACTGTGGGTGGTCCTAAAGAAGCTGGAGCTTAACGACGATTGTGATTTCGAAACCT 781
| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 758 ATGAACTGTGGGTGGTTCTAAAGAAGCTGGAGCTTAATGACGATTGTGATTTCGCAACCT 817
Query 782 CTTTCGAGATTTACGAATTCAATCGCGAGACTAACGAATGGACAAAGGTGATGAGCTTGA 841
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 818 CTTTCGAGATTTACGAATTCAATCGCGAGACTAATGAATGGACAAAGGTGATAAGCTTGA 877
Query 842 GAGGAAAAGCTTTGTTCTTGAGCCCTCAAGGTAGATGTATAGCTGTTTTAGCAGGTGAGA 901
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 878 GAGGAAAAGCTTTGTTCTTGAGCCCTCAAGGTAGATGTATAGCGGTTTTAGCAGGTGAAA 937
Query 902 GAGGAT-T------TT--TCAAAGACAACTCAGTTTATTTCATTGATGGTGATGATCCAA 952
|||||| | || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 938 GAGGATCTAGAGAATTCATCAAAGACAACTCAGTTTATTTCATTGATGGTGATGACCCAA 997
Query 953 GTGTAGGAGGA-TCAGGGCCTCAGAATCTGAGCGTTTTTGAATGGGAGAGTAAGCAAATC 1011
|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 GTATAGGAGGACT-AGGGCCTCAGAATCTGAGCGTTTTTGAATGGGAGAGTAAGCAAATC 1056
Query 1012 ATGAAAATTTACCAGCCAAGATCTTGGAATTGTCAGATGTTTTGGGTCACACCAACAGAC 1071
|||||||| || |||||||||||||||||||||||||||||||||||| |||| ||| |
Sbjct 1057 ATGAAAATCTATCAGCCAAGATCTTGGAATTGTCAGATGTTTTGGGTCGCACCTACAAAT 1116
Query 1072 GTTCCTCAGTGA 1083
|||| |||||||
Sbjct 1117 GTTCTTCAGTGA 1128
Score = 472 bits (255), Expect = 3e-132
Identities = 287/303 (95%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCTACCTTCTTCGTCGTGGTCAGAGTTTCTTCCGGAGCTTCTCAACACTGTATTC 60
|||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGCTGTATCTTCTTCGTCGTGGTCAGAGTTTCTTCCGGAGCTTCTCAACGCTGTATTT 60
Query 61 CACAACCTAAACGACGCCAGAGACATTCTAAACTGTGCCACGGTCTGTTCTTCTTGGAAG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CACAACCTAAACGACGCCAGAGACATTCTAAACTGTGCCACCGTCTGTTCTTCTTGGAAG 120
Query 121 GATTCTTCTTCGGCCGTATACTACAGCCGGACGTTTTCTCCTTTTCTGTTTATTTCCCAT 180
||||||||||| ||||||||||||||| || |||| |||||||||||||| ||||||||
Sbjct 121 GATTCTTCTTCTGCCGTATACTACAGCAAGAAGTTTGCTCCTTTTCTGTTTGTTTCCCAT 180
Query 181 CTCTCTTCCAATGAAGAAATCCGATTCTCCGACCAGTTTAGAGTTTTGTCTCCGGGAAAG 240
||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||||
Sbjct 181 CTCTCTTCCAATGAAGATATCCGATTCTTCGATCAATTTAGAGTTTTGTCTCCGGGAAAG 240
Query 241 TTGGGTTTCTCAGGGAACCAACAAGCGTGGGTTTGTGGCAGTACACTAGGGTTTTTGTTG 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TTGGGTTTCTCAGGGAACCAACAAGCGTGGGTGTGTGGCAGTACACTAGGGTTTTTGTTG 300
Query 301 ACG 303
|||
Sbjct 301 ACG 303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5