BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55160.2

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950171 jgi|Araly1|950171|scaffold_802058.1                        568    3e-161
  Ahg950172 jgi|Araly1|950172|scaffold_802059.1                        159    2e-38 


> Ahg950171 jgi|Araly1|950171|scaffold_802058.1
Length=433

 Score =  568 bits (307),  Expect = 3e-161
 Identities = 337/350 (96%), Gaps = 7/350 (2%)
 Strand=Plus/Plus

Query  262  ACA-GATGGTAATGAAGTCTTCTTTAGGATCAAGAGAAGCACTCAGCTCAAAAAACTGAT  320
            ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  90   ACAGGATGGTAATGAAGTCTTTTTTAGGATCAAGAGAAGCACTCAGCTCAAAAAGCTGAT  149

Query  321  GAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCTTTCTTGTTTGATGG  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  150  GAATGCTTACTGTGACCGTCAGTCTGTGGATTTCAACTCAATTGCTTTCTTGTTTGATGG  209

Query  381  TCGTCGTCTTCGTGCCGAGCAGACTCCAGATGAGCTTGAAATGGAAGATGGAGATGAGAT  440
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  210  TCGTCGTCTTCGTGCAGAGCAGACTCCAGATGAGCTTGAAATGGAAGATGGAGATGAGAT  269

Query  441  CGATGCAATGCTTCATCAGACTGGTGGTGGTGCTAAAAATGGCCTGAAGCTCTTCTGCTT  500
             |||||||||||||||||||||||||||| ||||   |||||||||||||| ||||||||
Sbjct  270  TGATGCAATGCTTCATCAGACTGGTGGTGCTGCT---AATGGCCTGAAGCTGTTCTGCTT  326

Query  501  TTAGTGGCGGTTATTTTAATGGTTTTCCATAAGATTGTGTGATATTAATGGATTTAGTGA  560
            ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  327  TTAGTGGC---TATTTTAATGGTTTTCCATAAGATTGTGTGATATTAATGGATTTAGTGA  383

Query  561  ATCGGCTTTAGATTAAATTTGGCAGGCTTTGTTTTACTTTGACCAGTTTC  610
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  384  ATCGGCTTTAGATTAAATTTGGCAGGCTTTGTTTTACTTTGACCAGTTTC  433


 Score =  159 bits (86),  Expect = 2e-38
 Identities = 93/96 (97%), Gaps = 2/96 (2%)
 Strand=Plus/Plus

Query  131  GTATAATCTGATAATAAAGTAAGATGTCTGCTACTCCGGAAGAAGACAAGAAGCCTGACC  190
            |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    GTATAATCTGAT-A-AAAGTAAGATGTCTGCTACTCAGGAAGAAGACAAGAAGCCTGACC  58

Query  191  AAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGG  226
            ||||||||||||||||||||||||||||||||||||
Sbjct  59   AAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGG  94


> Ahg950172 jgi|Araly1|950172|scaffold_802059.1
Length=394

 Score =  159 bits (86),  Expect = 2e-38
 Identities = 93/96 (97%), Gaps = 1/96 (1%)
 Strand=Plus/Plus

Query  131  GTATAATCTGATAATAAAGTAAGATGTCTGCTACTCCGGAAGAAGACAAGAAGCCTGACC  190
            |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1    GTATAATCTGATAA-AAAGTAAGATGTCTGCTACTCAGGAAGAAGACAAGAAGCCTGACC  59

Query  191  AAGGAGCTCACATCAATCTCAAAGTCAAGGGACAGG  226
            ||||||||||||||||| ||||||||||||||||||
Sbjct  60   AAGGAGCTCACATCAATTTCAAAGTCAAGGGACAGG  95



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25389862722


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5