BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55170.1
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917212 jgi|Araly1|917212|Al_scaffold_0008_1963 464 3e-130
Ahg950172 jgi|Araly1|950172|scaffold_802059.1 104 7e-22
> Ahg917212 jgi|Araly1|917212|Al_scaffold_0008_1963
Length=342
Score = 464 bits (251), Expect = 3e-130
Identities = 311/339 (92%), Gaps = 8/339 (2%)
Strand=Plus/Plus
Query 44 ATGTCTAACCCTC---AAGATGACAAG---CCCATCGACCAAGAACAAGAAGCTCATGTC 97
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTAACTCTCAAGAAGATGACAAGAATCCCATCGACCAAGAACAAGAAGCTCATGTC 60
Query 98 ATTCTCAAGGTCAAGAGCCAGGATGGAGACGAAGTCTTATTTAAGAACaaaaaaaGCGCT 157
|| |||||||||||||||||||||||||| |||||||||||||||| ||| |||||| ||
Sbjct 61 ATCCTCAAGGTCAAGAGCCAGGATGGAGATGAAGTCTTATTTAAGATCAAGAAAAGCACT 120
Query 158 CCACTTAAAAAGCTCATGTATGTTTACTGCGACCGCCGAGGTTTGAAATTAGACGCATTC 217
|| |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 121 CCGCTTAGAAAGCTCATGTACGCTTACTGCGACCGCCGAGGTTTGAAATTAGACGCATTC 180
Query 218 GCTTTCATTTTTAATGGAGCTCGTATAGGTGGC-CTGGAGACTCCAGATGAGCTTGATAT 276
|||||||||||| ||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct 181 GCTTTCATTTTTGATGGAGCTCGTATCCATGGCAC-GCAGACTCCAGATGAGCTTGATAT 239
Query 277 GGAAGATGGAGATGTGATAGATGCGTGCCGGGCGATGAGTGGTGGTCTACGAGCAAATCA 336
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGAAGATGGAGATGAGATCGATGCGTGCCGGGCGATGAGTGGTGGTCTACGAGCAAATCA 299
Query 337 GCGTCAGTGGTCTTATATGCTTTTCGATCATAATGGGCT 375
|| |||||||||||||||| |||||||||||||| ||||
Sbjct 300 GCTTCAGTGGTCTTATATGGTTTTCGATCATAATCGGCT 338
> Ahg950172 jgi|Araly1|950172|scaffold_802059.1
Length=394
Score = 104 bits (56), Expect = 7e-22
Identities = 262/353 (74%), Gaps = 48/353 (14%)
Strand=Plus/Plus
Query 83 CAAGAAGCTCATGTC-ATTCTCAAGGTCAAGAGCCAGGATGGA-GACGAAGTCTTATTTA 140
|||| |||||| || ||| |||| |||||| | |||||| || | |||||||| ||||
Sbjct 59 CAAGGAGCTCACATCAATT-TCAAAGTCAAGGGACAGGAT-GATAATGAAGTCTTCTTTA 116
Query 141 AGAACaaaaaaaGCGCTCCA-CTTAAAAAGCTCATGTATGTTTACTG-CGACCGCCGAGG 198
| ||| | |||| || || ||||| ||||| ||| ||| |||||| | |||| | |
Sbjct 117 GGCTCAAGAGAAGCACT-CAGCTTAAGAAGCTTATGAATGCTTACTGTC-ACCGTC-A-A 172
Query 199 TTTGA--A-ATTAGACGC-ATTCGCTTTCA-TT-TTTAATGGAGC-TCGTATAGGTGGCC 251
| ||| | || | || | ||| | ||| | || ||| |||| | |||| | || ||
Sbjct 173 TCTGAGGATATCA-ACTCAATT-G-TTT-ACTTCTTTGATGG-TCGTCGTCTTCGT-GCA 226
Query 252 TGG-AGACTCCAGATGAGCTTGATATGGAAGATGGAGATGTGATAGATGCGTGCCG---- 306
|| ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 227 GGGCAGACTGTAGATGAGCTTGATATGGAAGATGGAGATGTGATCTATGCGTGCCACTCA 286
Query 307 ---GGCGATGAGT------G--G-T---GGTCTACGAGCAAATCAGCGTCAGTGGTCTTA 351
|||| || || | | | |||||||||||| |||||||||||||||||||
Sbjct 287 CAAGGCGGTG-GTCTACAAGCAGATCATGGTCTACGAGCAGATCAGCGTCAGTGGTCTTA 345
Query 352 TATGCTTTTCGATCATAATGGGCTTTAATTAGGAATAATTTGGCTGGCTTTGT 404
|||| |||||||||||||| |||| || ||| ||||||||| ||||||||
Sbjct 346 TATGGTTTTCGATCATAATCGGCTCTAG---GGA-TAATTTGGCAGGCTTTGT 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19688283924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5