BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55190.1
Length=990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950176 jgi|Araly1|950176|scaffold_802063.1 1151 0.0
Ahg941552 jgi|Araly1|941552|scaffold_602096.1 747 0.0
Ahg917191 jgi|Araly1|917191|Al_scaffold_0008_1942 719 0.0
> Ahg950176 jgi|Araly1|950176|scaffold_802063.1
Length=707
Score = 1151 bits (623), Expect = 0.0
Identities = 676/702 (96%), Gaps = 2/702 (0%)
Strand=Plus/Plus
Query 93 TAGCTTCACTTTCGCCGATGGC-TCTACCTAACCAGCAAACCGTGGATTACCCTAGCTTC 151
|||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 4 TAGCTTCACTTTCGTCGATGGCAT-TACCTAACCAGCAAACCGTGGATTACCCTAGCTTC 62
Query 152 AAGCTCGTTATCGTTGGCGATGGAGGCACAGGGAAGACCACATTTGTAAAGAGACATCTT 211
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 63 AAGCTCGTCATCGTTGGTGATGGAGGCACAGGGAAAACCACATTTGTAAAGAGACATCTT 122
Query 212 ACTGGAGAGTTTGAGAAGAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTGAT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACTGGAGAGTTTGAGAAGAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTGAT 182
Query 272 TTCTTCACTAACTGTGGCAAGATCCGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAA 331
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 183 TTCTTCACTAACTGTGGCAAGATCCGTTTTTACTGTTGGGATACTGCCGGACAAGAGAAA 242
Query 332 TTTGGTGGTCTTAGGGATGGTTACTACATCCATGGACAATGTGCTATCATCATGTTTGAT 391
||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 243 TTTGGTGGTCTGAGGGATGGTTACTATATCCATGGGCAATGTGCCATCATCATGTTTGAT 302
Query 392 GTCACAGCACGACTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTT 451
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GTCACAGCACGTCTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTC 362
Query 452 TGTGAAAACATCCCAATTGTTCTTTGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTC 511
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 363 TGTGAAAACATCCCAATTGTTCTTTGTGGGAATAAAGTTGATGTCAAGAACAGGCAAGTC 422
Query 512 AAGGCCAAGCAGGTAACATTCCACAGGAAGAAGAACCTCCAGTATTACGAGATATCTGCC 571
||||||||||| ||||| ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 423 AAGGCCAAGCAAGTAACTTTCCATAGGAAGAAGAATCTCCAGTATTACGAAATATCTGCC 482
Query 572 AAGAGCAACTACAACTTCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGAC 631
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AAGAGCAACTACAATTTCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGAC 542
Query 632 GCTAATCTTCACTTTGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACTTG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 543 GCTAATCTTCACTTTGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACATG 602
Query 692 GCTGCTCAGCAGCAGCATGAGGCGGAGCTTGCAGCAGCAGCAAGTCAGCCACTTCCTGAT 751
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 603 GCTGCTCAGCAGCAGCATGAGGCGGAGCTTGCAGCGGCAGCAAGTCAGCCACTTCCTGAT 662
Query 752 GACGATGATGACACCTTCGAGTAGAGAAAGAGAGATGTGATC 793
||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 663 GACGATGATGACACCTTTGAGTAGAGACAGAGAGATGTGATC 704
> Ahg941552 jgi|Araly1|941552|scaffold_602096.1
Length=706
Score = 747 bits (404), Expect = 0.0
Identities = 578/661 (87%), Gaps = 16/661 (2%)
Strand=Plus/Plus
Query 110 ATGGCTCTACCTAACCAGCAAACCGTGGATTACCCTAGCTTCAAGCTCGTTATCGTTGGC 169
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 21 ATGGCTCTACCTAACCAGCAAACCGTAGATTACCCAAGCTTCAAGCTCGTCATTGTTGGT 80
Query 170 GATGGAGGCACAGGGAAGACCACATTTGT-AAAGAGACATCTTACTGGAGAGTTTGAGAA 228
|||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||
Sbjct 81 GATGGAGGCACAGGGAAGACTACTTTTGTGAAA-AGACATCTTACTGGAGAGTTTGAGAA 139
Query 229 GAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTT-GATTTCTTCACTAACTGTG 287
|||||||||||| ||||||||||| ||||||||||| || ||||||||||| |||||||
Sbjct 140 GAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCA-TTAGATTTCTTCACAAACTGTG 198
Query 288 GCAAGATCCGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGGG 347
||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| |||||||
Sbjct 199 GCAAGATCCGTTTTTACTGCTGGGACACTGCGGGGCAAGAGAAATTTGGTGGCCTTAGGG 258
Query 348 ATGGTTACTACATCCATGGACAATGTGCTATCATCATGTTTGATGTCACAGCACGACTGA 407
|||| |||||||| ||||| |||||||| || || |||||||| ||||||||| | || |
Sbjct 259 ATGGATACTACATTCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCTCA 318
Query 408 CATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAAAACATCCCAA 467
|||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 319 CATACAAGAACGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGA 378
Query 468 TTGTTCTTTGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAGGTAA 527
||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 379 TTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTGA 438
Query 528 CATTCCACAGGAAGAAGAACCTCCAGTATTACGAGATATCTGCCAAGAGCAACTACAACT 587
||||||||||||||||||| || ||||| || |||||||| || ||||||||||||||||
Sbjct 439 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTACAACT 498
Query 588 TCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGACGCTAATC-TTCACTTT 646
| |||||||| |||||||||||||||||||| || || |||||| | || | ||||||||
Sbjct 499 TTGAGAAGCCCTTCTTGTACCTTGCTAGAAAACTGGCTGGGGAC-CAAAACCTTCACTTT 557
Query 647 GTGGA-ATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGAC-TTGGCTGCTCAGCAGC 704
||||| | |||| || |||||||| || || ||||| || ||| ||| ||| |||||||
Sbjct 558 GTGGAGA-CACCAGCTCTTGCTCCACCAGAGGTTCACATTGACATTG-CTGATCAGCAGA 615
Query 705 AGCATGAGGCGGAGCT-TG-CAG-CAGCAGCAAGTCAGCCACTTCCTGATGACGATGATG 761
|| | ||||| ||||| | ||| | ||||| ||||||||| || ||||| |||||||
Sbjct 616 AGAACGAGGCCGAGCTCTTACAGGCTGCAGC---TCAGCCACTCCCCGATGATGATGATG 672
Query 762 A 762
|
Sbjct 673 A 673
> Ahg917191 jgi|Araly1|917191|Al_scaffold_0008_1942
Length=582
Score = 719 bits (389), Expect = 0.0
Identities = 493/543 (91%), Gaps = 8/543 (1%)
Strand=Plus/Plus
Query 236 GAACCCACTATTGGTGTTGAGGTTCATCCTCTTGATTTCTTCACTAACTGTGGCAAGATC 295
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 43 GAACCCACTATTGGTGTTGAGGTCCATCCTCTTGATTTCTTCACTAACTGTGGCAAGATC 102
Query 296 CGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGGGATGGTTAC 355
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 103 CGTTTTTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTGAGGGATGGTTAC 162
Query 356 TACATCCATGGACAATGTGCTATCATCATGTTTGATGTCACAGCACGACTGACATACAAG 415
|| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 163 TATATCCATGGGCAATGTGCCATCATCATGTTTGATGTCACAGCACGTCTGACATACAAG 222
Query 416 AATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAAAACATCCCAATTGTTCTT 475
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 223 AATGTTCCAACATGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTT 282
Query 476 TGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAGGTAACATTCCAC 535
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 283 TGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAAGTAACATTCCAC 342
Query 536 AGGAAGAAGAACCTCCAGTATTACGAGATATCTGCCAAGAGCAACTACAACTTCGAGAAG 595
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 343 AGGAAGAAGAATCTCCAGTATTACGAAATATCTGCCAAGAGCAACTACAATTTCGAGAAG 402
Query 596 CCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGACGCTAATC-TTCACTTTGTGGAATC 654
||||||||||||||||||||||| | || || ||| | || | |||||||||| || ||
Sbjct 403 CCATTCTTGTACCTTGCTAGAAAATTGGCTGGCGAC-CAAAACCTTCACTTTGTCGAGTC 461
Query 655 ACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACT-TGGCTGCTCAGCAGCAGCATGAGG 713
||| || |||||||| || || ||||| |||||| || ||||||||||| || | ||||
Sbjct 462 ACCCGCGCTTGCTCCACCAGAGGTTCACATCGACCATG-CTGCTCAGCAGAAGAACGAGG 520
Query 714 CGGAGCTTGCA--GCAGCAGCAAGTCAGCCACTTCCTGATGACGATGATGACACCTTCGA 771
| || || || || || |||||||||||||| || ||||| ||||| || | |||||
Sbjct 521 CCGATCT--CATTGCGGCGGCAAGTCAGCCACTCCCGGATGATGATGACGATGCTTTCGA 578
Query 772 GTA 774
|||
Sbjct 579 GTA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36788614905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5