BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55190.1 Length=990 Score E Sequences producing significant alignments: (Bits) Value Ahg950176 jgi|Araly1|950176|scaffold_802063.1 1151 0.0 Ahg941552 jgi|Araly1|941552|scaffold_602096.1 747 0.0 Ahg917191 jgi|Araly1|917191|Al_scaffold_0008_1942 719 0.0 > Ahg950176 jgi|Araly1|950176|scaffold_802063.1 Length=707 Score = 1151 bits (623), Expect = 0.0 Identities = 676/702 (96%), Gaps = 2/702 (0%) Strand=Plus/Plus Query 93 TAGCTTCACTTTCGCCGATGGC-TCTACCTAACCAGCAAACCGTGGATTACCCTAGCTTC 151 |||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 4 TAGCTTCACTTTCGTCGATGGCAT-TACCTAACCAGCAAACCGTGGATTACCCTAGCTTC 62 Query 152 AAGCTCGTTATCGTTGGCGATGGAGGCACAGGGAAGACCACATTTGTAAAGAGACATCTT 211 |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 63 AAGCTCGTCATCGTTGGTGATGGAGGCACAGGGAAAACCACATTTGTAAAGAGACATCTT 122 Query 212 ACTGGAGAGTTTGAGAAGAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTGAT 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 ACTGGAGAGTTTGAGAAGAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTTGAT 182 Query 272 TTCTTCACTAACTGTGGCAAGATCCGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAA 331 ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| Sbjct 183 TTCTTCACTAACTGTGGCAAGATCCGTTTTTACTGTTGGGATACTGCCGGACAAGAGAAA 242 Query 332 TTTGGTGGTCTTAGGGATGGTTACTACATCCATGGACAATGTGCTATCATCATGTTTGAT 391 ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||| Sbjct 243 TTTGGTGGTCTGAGGGATGGTTACTATATCCATGGGCAATGTGCCATCATCATGTTTGAT 302 Query 392 GTCACAGCACGACTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTT 451 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GTCACAGCACGTCTGACATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTC 362 Query 452 TGTGAAAACATCCCAATTGTTCTTTGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTC 511 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 363 TGTGAAAACATCCCAATTGTTCTTTGTGGGAATAAAGTTGATGTCAAGAACAGGCAAGTC 422 Query 512 AAGGCCAAGCAGGTAACATTCCACAGGAAGAAGAACCTCCAGTATTACGAGATATCTGCC 571 ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 423 AAGGCCAAGCAAGTAACTTTCCATAGGAAGAAGAATCTCCAGTATTACGAAATATCTGCC 482 Query 572 AAGAGCAACTACAACTTCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGAC 631 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 AAGAGCAACTACAATTTCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGAC 542 Query 632 GCTAATCTTCACTTTGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACTTG 691 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 543 GCTAATCTTCACTTTGTGGAATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACATG 602 Query 692 GCTGCTCAGCAGCAGCATGAGGCGGAGCTTGCAGCAGCAGCAAGTCAGCCACTTCCTGAT 751 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 603 GCTGCTCAGCAGCAGCATGAGGCGGAGCTTGCAGCGGCAGCAAGTCAGCCACTTCCTGAT 662 Query 752 GACGATGATGACACCTTCGAGTAGAGAAAGAGAGATGTGATC 793 ||||||||||||||||| ||||||||| |||||||||||||| Sbjct 663 GACGATGATGACACCTTTGAGTAGAGACAGAGAGATGTGATC 704 > Ahg941552 jgi|Araly1|941552|scaffold_602096.1 Length=706 Score = 747 bits (404), Expect = 0.0 Identities = 578/661 (87%), Gaps = 16/661 (2%) Strand=Plus/Plus Query 110 ATGGCTCTACCTAACCAGCAAACCGTGGATTACCCTAGCTTCAAGCTCGTTATCGTTGGC 169 |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||| Sbjct 21 ATGGCTCTACCTAACCAGCAAACCGTAGATTACCCAAGCTTCAAGCTCGTCATTGTTGGT 80 Query 170 GATGGAGGCACAGGGAAGACCACATTTGT-AAAGAGACATCTTACTGGAGAGTTTGAGAA 228 |||||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||| Sbjct 81 GATGGAGGCACAGGGAAGACTACTTTTGTGAAA-AGACATCTTACTGGAGAGTTTGAGAA 139 Query 229 GAAGTATGAACCCACTATTGGTGTTGAGGTTCATCCTCTT-GATTTCTTCACTAACTGTG 287 |||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||||| Sbjct 140 GAAGTATGAACCTACTATTGGTGTGGAGGTTCATCCA-TTAGATTTCTTCACAAACTGTG 198 Query 288 GCAAGATCCGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGGG 347 ||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||||| Sbjct 199 GCAAGATCCGTTTTTACTGCTGGGACACTGCGGGGCAAGAGAAATTTGGTGGCCTTAGGG 258 Query 348 ATGGTTACTACATCCATGGACAATGTGCTATCATCATGTTTGATGTCACAGCACGACTGA 407 |||| |||||||| ||||| |||||||| || || |||||||| ||||||||| | || | Sbjct 259 ATGGATACTACATTCATGGTCAATGTGCCATAATAATGTTTGACGTCACAGCAAGGCTCA 318 Query 408 CATACAAGAATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAAAACATCCCAA 467 |||||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||| | Sbjct 319 CATACAAGAACGTTCCGACATGGCACCGTGATCTCTGCAGGGTGTGTGAAAACATCCCGA 378 Query 468 TTGTTCTTTGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAGGTAA 527 ||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| | Sbjct 379 TTGTTCTGTGTGGGAACAAAGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTGA 438 Query 528 CATTCCACAGGAAGAAGAACCTCCAGTATTACGAGATATCTGCCAAGAGCAACTACAACT 587 ||||||||||||||||||| || ||||| || |||||||| || |||||||||||||||| Sbjct 439 CATTCCACAGGAAGAAGAATCTGCAGTACTATGAGATATCGGCAAAGAGCAACTACAACT 498 Query 588 TCGAGAAGCCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGACGCTAATC-TTCACTTT 646 | |||||||| |||||||||||||||||||| || || |||||| | || | |||||||| Sbjct 499 TTGAGAAGCCCTTCTTGTACCTTGCTAGAAAACTGGCTGGGGAC-CAAAACCTTCACTTT 557 Query 647 GTGGA-ATCACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGAC-TTGGCTGCTCAGCAGC 704 ||||| | |||| || |||||||| || || ||||| || ||| ||| ||| ||||||| Sbjct 558 GTGGAGA-CACCAGCTCTTGCTCCACCAGAGGTTCACATTGACATTG-CTGATCAGCAGA 615 Query 705 AGCATGAGGCGGAGCT-TG-CAG-CAGCAGCAAGTCAGCCACTTCCTGATGACGATGATG 761 || | ||||| ||||| | ||| | ||||| ||||||||| || ||||| ||||||| Sbjct 616 AGAACGAGGCCGAGCTCTTACAGGCTGCAGC---TCAGCCACTCCCCGATGATGATGATG 672 Query 762 A 762 | Sbjct 673 A 673 > Ahg917191 jgi|Araly1|917191|Al_scaffold_0008_1942 Length=582 Score = 719 bits (389), Expect = 0.0 Identities = 493/543 (91%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 236 GAACCCACTATTGGTGTTGAGGTTCATCCTCTTGATTTCTTCACTAACTGTGGCAAGATC 295 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 43 GAACCCACTATTGGTGTTGAGGTCCATCCTCTTGATTTCTTCACTAACTGTGGCAAGATC 102 Query 296 CGTTTCTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTTAGGGATGGTTAC 355 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 103 CGTTTTTACTGTTGGGATACTGCTGGCCAAGAGAAATTTGGTGGTCTGAGGGATGGTTAC 162 Query 356 TACATCCATGGACAATGTGCTATCATCATGTTTGATGTCACAGCACGACTGACATACAAG 415 || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 163 TATATCCATGGGCAATGTGCCATCATCATGTTTGATGTCACAGCACGTCTGACATACAAG 222 Query 416 AATGTTCCAACATGGCACCGTGATCTTTGCAGGGTTTGTGAAAACATCCCAATTGTTCTT 475 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 223 AATGTTCCAACATGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTT 282 Query 476 TGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAGGTAACATTCCAC 535 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 283 TGTGGGAATAAAGTTGATGTGAAGAACAGGCAAGTCAAGGCCAAGCAAGTAACATTCCAC 342 Query 536 AGGAAGAAGAACCTCCAGTATTACGAGATATCTGCCAAGAGCAACTACAACTTCGAGAAG 595 ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 343 AGGAAGAAGAATCTCCAGTATTACGAAATATCTGCCAAGAGCAACTACAATTTCGAGAAG 402 Query 596 CCATTCTTGTACCTTGCTAGAAAGCTCGCCGGGGACGCTAATC-TTCACTTTGTGGAATC 654 ||||||||||||||||||||||| | || || ||| | || | |||||||||| || || Sbjct 403 CCATTCTTGTACCTTGCTAGAAAATTGGCTGGCGAC-CAAAACCTTCACTTTGTCGAGTC 461 Query 655 ACCTGCCCTTGCTCCCCCGGAAGTTCAAATCGACT-TGGCTGCTCAGCAGCAGCATGAGG 713 ||| || |||||||| || || ||||| |||||| || ||||||||||| || | |||| Sbjct 462 ACCCGCGCTTGCTCCACCAGAGGTTCACATCGACCATG-CTGCTCAGCAGAAGAACGAGG 520 Query 714 CGGAGCTTGCA--GCAGCAGCAAGTCAGCCACTTCCTGATGACGATGATGACACCTTCGA 771 | || || || || || |||||||||||||| || ||||| ||||| || | ||||| Sbjct 521 CCGATCT--CATTGCGGCGGCAAGTCAGCCACTCCCGGATGATGATGACGATGCTTTCGA 578 Query 772 GTA 774 ||| Sbjct 579 GTA 581 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36788614905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5