BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55200.1
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495605 jgi|Araly1|495605|fgenesh2_kg.8__1421__AT5G55200.1 1784 0.0
Ahg492124 jgi|Araly1|492124|fgenesh2_kg.7__1557__AT4G26780.1 442 3e-123
> Ahg495605 jgi|Araly1|495605|fgenesh2_kg.8__1421__AT5G55200.1
Length=1161
Score = 1784 bits (966), Expect = 0.0
Identities = 1068/1117 (96%), Gaps = 8/1117 (1%)
Strand=Plus/Plus
Query 58 TTTTGCTTTTCTTCTTCGATTCATTGCGCGAATCAT-CCGTGATGTTGGTGTCTAGGGTT 116
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1 TTTTGCTTTTCTTCTTCGATTCATTGCGCGAATC-TCCCGTGATGTTGGTGTCTAGGGTT 59
Query 117 TTATCAAGAGTTTCTCGCAGCGCAGGCTTACGCTCGTCTTTCTCCTCCGTCGTTACTCCG 176
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TTATCGAGAGTTTCTCGCAGCGCAGGCTTACGCTCGTCTCTCTCCTCCGTCGTTACTCCG 119
Query 177 AAGAGGAATCAGATTCCGATTGTTGCAAGCCGATTTCACTCCCTCGTTCACGGAACCCCC 236
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||
Sbjct 120 AAGAGGAATCAGATTCCGATTGTTTCAAGCCGATTTCACTCCCTCGTTCATGGAAATCCC 179
Query 237 AACAAGCTTGTTGCAGTTCCAGTGTCGCTCCGAAACCATGGAACTCTAGATTTGAATGTT 296
||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 180 AACAAGCTTGTTGCAGTTCCAGTGTCGCTCCTAAACCATGGAATTCTCGATTTGAATGTT 239
Query 297 CTTCAAAGGTTCGGCtttttttCCTCTTCCTCAGCTGAACCGAAGGGAAATGAGAGTAAC 356
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 CTTCAAAGGTTCGGCTTTTTTTCCTCTTCCTCAGCTGAACCTAAGGGAAATGAGAGTAAC 299
Query 357 ACCGAAGTACCAAAGACCGGCGAAACTTCTGAGAATGTGGAGGTGGGGAAAGCTACAGAT 416
|||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||
Sbjct 300 ACCGAAGTACCAAAGACCGGCGAAGCTTCTGAGGATGTGGAGGTGGGGAGAGATACAGAC 359
Query 417 GCAGAGATTGACTTCGACGATTTGTCAAGAGACGATTTAGTGAAGCTTGTGAGTGAGAAG 476
||||||||||| ||||| ||| |||||||||||||||| |||||||||||| ||||||||
Sbjct 360 GCAGAGATTGATTTCGATGATATGTCAAGAGACGATTTGGTGAAGCTTGTGGGTGAGAAG 419
Query 477 GAAGATCTTTTGAAGGTTCAGCAGAAAGACATAATGGAAATGAAAGATAAATTTCTTCGC 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 GAAGATCTTTTGAAGGTTCAGCAGAAAGACATAAAGGAAATGAAAGATAAATTTCTTCGC 479
Query 537 ACTTATGCTGAGCAGCAGAATCTTATGGACAGGACTAACCGTAATGCTGAAAGCGCCAAA 596
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 480 ACTTATGCTGAGCAGCAGAATCTAATGGACAGGACTAAACGTAATGCTGAAAGCGCCAAA 539
Query 597 AAGTTCGCTGTACAGAACTTTGCAACGAGCCTTTTGGATGTGGCGGATAATCTTGAAAGA 656
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAGTTCGCCGTACAGAACTTTGCAACGAGCCTTTTGGATGTGGCGGATAATCTTGAAAGA 599
Query 657 GCTTCTTCTGTTGTCAAAGAGAGTTTTTCGAAGATCGACACTTCAAAAGATTTGGCTGGT 716
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 GCTTCTTCAGTTGTCAAAGAGAGTTTTTCGAAGATCGACACTTCAAAAGATTCGGCTGGT 659
Query 717 GCTACTCCACTGTTAAAAAACCTATTAGAAGGAGTGGAGATGACTGAGAAACAATTAGCT 776
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTGCTCCACTGTTAAAAAACCTATTAGAAGGAGTGGAGATGACTGAGAAACAATTAGCA 719
Query 777 GAGGTGTTTAGAAAAGCTGGTTTGGTGAAAGAAGATCCTTTAAATGAACCGTTTAATCCA 836
|||||||||| |||| |||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 720 GAGGTGTTTAAAAAATCTGGTTTGGTGAAAGAAGATCCTTTAAATGAACCATTTGATCCA 779
Query 837 AACAGACATAACGCAGTGTTCCAAGTCCCAGATGCTTCCAAGCCAAAAGGCACAATTGCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACAGACATAACGCAGTGTTCCAAGTCCCAGATGCTTCCAAGCCAAAAGGCACAATTGCT 839
Query 897 CATGTCCTAAAGTCTGGATACTCATTGTACGATCGAGTTATAAGGCCAGCTGAGGTTGGT 956
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATGTCCTTAAGTCTGGATACTCATTGTACGATCGAGTTATAAGGCCAGCTGAGGTTGGT 899
Query 957 GTTACTTGCGCCGTGGAGAATCAAGAAGGCG-GCAAAGAGTCTGCAGCTTGAAATACTTA 1015
||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 900 GTTACTTGCGCAGTGGAGAATCAAGAAGGCGAG-AAAGAGTCTGCAGCTTGAAAAACTTA 958
Query 1016 AAACATCGAGAGTTAAGCTTTTGTTTTTAACATCTTCATGAGTTCtttttttAGTTAATA 1075
|| || ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 959 AA-CAACGAGAGTTAAGCTTT-GTTTT-AACATCTTCATGAGTTATTTTTTTAGTTAATA 1015
Query 1076 GTTCTCTTTCTTTGCATATTCATTGGAGGAACAAGATTCCCATAAGGTAGCATGACTATG 1135
|||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| ||
Sbjct 1016 GTTCTCTTTCTT-GCATATTCATTGGAGGAACAAGATTCCCATAAAGTAGCAGGACTTTG 1074
Query 1136 CTCTGTACTTCCAGGGAAGCCCTGGTTCTGTAACTTT 1172
|||||||||||||||||| ||||||||||||||||||
Sbjct 1075 CTCTGTACTTCCAGGGAAACCCTGGTTCTGTAACTTT 1111
Score = 87.9 bits (47), Expect = 2e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1193 AGCCAAACTCTTGGTAAAAGCTTCAAATCTTACATTTATATAACTTCTTC 1242
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1112 AGCCAAACTCTTGGTAAAAGCTTCAAATCTTACATATATATAACTTCTTC 1161
> Ahg492124 jgi|Araly1|492124|fgenesh2_kg.7__1557__AT4G26780.1
Length=1206
Score = 442 bits (239), Expect = 3e-123
Identities = 440/535 (82%), Gaps = 22/535 (4%)
Strand=Plus/Plus
Query 438 TTGTC-AAGAGACGATTTAGTGAAGCTTGTGAG-TGAGAAGGAAGATCTTTTGAAGGTTC 495
||||| ||| || ||||| |||||||| || || ||| |||||||| || || |
Sbjct 406 TTGTCAAAG-GATGATTTGGTGAAGCTCGT-AGCTGAAAAGGAAGAGCTACTGTCTGAAA 463
Query 496 A-GCAGAAAGACA-TAATGGAAATGAAAGATAAATTTCTTCGCACTTATGCTGAGCA-GC 552
| | || |||| | ||| | |||||||||||||| |||||||||||||||||||| | |
Sbjct 464 AGGAAG-AAGAGATTAA-GAAAATGAAAGATAAAGTTCTTCGCACTTATGCTGAG-ATGG 520
Query 553 AGAATCTTATGGACAGGACTAA-CCGT-AATGCTGAAAGCGCCAAAAAGT-TCGCTGTAC 609
||||| | |||||||| || || ||| || ||||||| | ||||||||| | || ||||
Sbjct 521 AGAATGTCATGGACAGAAC-AAGACGTGAA-GCTGAAAACACCAAAAAGTAT-GCCGTAC 577
Query 610 AGAACTTTGCAACGAGCCTTTTGGATGTGGCGGATAATCTTGAAAGAGCTTCTTCTGTTG 669
|||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||||
Sbjct 578 AGAATTTTGCAAAGAGCCTTCTGGATGTGGCGGATAATCTTGGAAGAGCTTCTTCGGTTG 637
Query 670 TCAAAGAGAGTTTTTCGAAGATCGACACTTCAAAAGATTTGGCTGGTGCTA-CTCCACTG 728
||||||| || || || ||| | ||||| || |||||| |||||| || | |||||||
Sbjct 638 TCAAAGAAAGCTTCTCAAAGCTTGACACCTCGGAAGATTCGGCTGGAGC-AGCTCCACTA 696
Query 729 TTAAAAAACCTATTAGAAGGAGTGGAGATGACTGAGAAACAATTAGCTGAGGTGTTTA-G 787
|| || | ||| ||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 697 TTGAAGACCCTTTTAGAAGGAGTGGAGATGACTGAGAAACAGCTAGCTGAGGTATTTAAG 756
Query 788 AAAAGCTGGTTTGGTGAAAGAA-GATCCTTTAAATGAACCGTTTAATCCAAACAGACATA 846
||| |||| ||| ||| | | |||||| ||| || |||||| |||||||||||||||
Sbjct 757 AAATT-TGGTATGGAGAA-GTATGATCCTACAAACGAGCCGTTTGATCCAAACAGACATA 814
Query 847 ACGCAGTGTTCCAAGTCCCAGATGCTTCCAAGCCAAAAGGCACAATTGCTCATGTCCTAA 906
||||| ||||||||||||| |||||||| |||||| |||||||| ||||||||||| | |
Sbjct 815 ACGCAATGTTCCAAGTCCCTGATGCTTCTAAGCCAGAAGGCACAGTTGCTCATGTCTTGA 874
Query 907 AGTCTGGATACTCATTGTACGATCGAGTTATAAGGCCAGCTGAGGTTGGTGTTAC 961
||| ||||||| | |||| || ||||||||||| ||||||||||||||||||||
Sbjct 875 AGTATGGATACACGCTGTATGACCGAGTTATAAGACCAGCTGAGGTTGGTGTTAC 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46471835823
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5