BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55210.1
Length=860
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331859 jgi|Araly1|331859|fgenesh1_pm.C_scaffold_8001202 800 0.0
Ahg495605 jgi|Araly1|495605|fgenesh2_kg.8__1421__AT5G55200.1 111 6e-24
> Ahg331859 jgi|Araly1|331859|fgenesh1_pm.C_scaffold_8001202
Length=504
Score = 800 bits (433), Expect = 0.0
Identities = 483/507 (95%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 73 ATGGAAGGTGTAGGATCGAGATTGAGCCGGACGTCATCGAGATACAGTGGTCCGGCGGCG 132
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGAAGGTGTAGGATCGAGATTGAGCCGGACTTCTTCGAGATACAGTGGTCCGGCGGCG 60
Query 133 ACGGCGGTGTTCAGTGGCCGTGTAAGGAAATGGAAGAAGAAGTGGGTACGTGTCTCAACC 192
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 ACGGCGGTTTTCAGTGGCCGTGTAAGGAAGTGGAAGAAGAAATGGGTACGTGTCTCAACC 120
Query 193 TCATCCGTCGGTGTTTTCAGAGCATCTAAATCCAACGGTCGTAACAACAGCAACAACAGT 252
||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||
Sbjct 121 TCATCCGTCGGTGTTTTCAGAGCATCTAAATCCAACGGTCGTAAC-A-A-CAATAACAGT 177
Query 253 AACTCACCACACCATCTACTTCTCCATAAGTGGACTCCACTTACCTCAGCGACGGTTACT 312
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 178 AACTCACCTCACCATCTACTTCTCCATAAGTGGACTCCACTTACTTCGGCGACGGTTACT 237
Query 313 GCCTCCGACGCTAATGGTTCCGGTGAGACAGAGGAGTCGCCTAAGCGAAGATTCAGATAC 372
||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||
Sbjct 238 GCCTCCGACGCTAATGGTTCCGGTGAGACGGAGGAGCCACCTAAACGAAGATTCAGATAC 297
Query 373 GCTCCAATTGCGATGCTTGAGCATAGAGAAAAAGTGATTTCTAAGGATTCTGAAATTGAA 432
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 298 GCTCCAATTGCGATGCTTGAGCATAGAGAGAAAGTGGTTTCTAAGGATTCTGAAATTGAA 357
Query 433 GAGACTGAAGAATTCGACACTGAATCTCCATTACCTAAAGCTGTTGAGCTAGACATGAAC 492
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 358 GAGACTGAAGAATTCGACACTGAATCTCCATTACCTAAAGCTGTTGAGTTGGACATGAAC 417
Query 493 CTAACAGACTCAGACCAAACTAAGGAAGCAAAAACTGGTAATTTGAATCTGGGACTGTGT 552
||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 418 ATAACAGATTCAGACCAAACTAAGGAAGCAAAAACTGGGAACTTGAATCTGGGACTGTGT 477
Query 553 CTGAATTCTGAAGGGACTGAAGAATGA 579
|||||||||||||||||||||||||||
Sbjct 478 CTGAATTCTGAAGGGACTGAAGAATGA 504
> Ahg495605 jgi|Araly1|495605|fgenesh2_kg.8__1421__AT5G55200.1
Length=1161
Score = 111 bits (60), Expect = 6e-24
Identities = 120/145 (83%), Gaps = 20/145 (14%)
Strand=Plus/Minus
Query 716 GAAGAAGTTATATAAATGTAAGATTTGAAGCTTTTACCAAGAGTTTGGCTTTGGCTTATG 775
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1161 GAAGAAGTTATATATATGTAAGATTTGAAGCTTTTACCAAGAGTTTGGCT-------A-- 1111
Query 776 AATTTGTGTAAAAGTTACAGAACCAGGGCTTCCCTGGAAGTACAGAGCATAGTCATGCTA 835
|| || || ||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 1110 AA---GT-TA-------CAGAACCAGGGTTTCCCTGGAAGTACAGAGCAAAGTCCTGCTA 1062
Query 836 CCTTATGGGAATCTTGTTCCTCCAA 860
| |||||||||||||||||||||||
Sbjct 1061 CTTTATGGGAATCTTGTTCCTCCAA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31832635695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5