BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55230.2
Length=2224
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495608 jgi|Araly1|495608|fgenesh2_kg.8__1424__AT5G55230.1 1718 0.0
Ahg492126 jgi|Araly1|492126|fgenesh2_kg.7__1559__AT4G26760.1 917 0.0
> Ahg495608 jgi|Araly1|495608|fgenesh2_kg.8__1424__AT5G55230.1
Length=2127
Score = 1718 bits (930), Expect = 0.0
Identities = 1006/1042 (97%), Gaps = 8/1042 (1%)
Strand=Plus/Plus
Query 1154 AGGCTGAGGTGGAAGTTGATAGGCTTGACCAGCTGAAAGCTAGCCGAATGAAAGAAATTG 1213
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1037 AGGCTGAGGTGGAAGTGGATAGGCTTGACCAGCTTAAAGCTAGCCGAATGAAGGAAATTG 1096
Query 1214 CGTTCAAGAAGCAATCTGAGCTTGAAGAGATATATGCTCGTGCCCATGTAGAAGTTAACC 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1097 CGTTCAAGAAGCAATCTGAGCTTGAAGAGATATATGCTCGTGCCCATGTAGAAATAAACC 1156
Query 1274 CGGAATCTGCTCGTGAGAGAATCATGTCGCTGATTGATTCTGGAAACGTTGAGCCTACTG 1333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CGGAATCTGCTCGTGAGAGAATCATGTCGCTGATTGATTCTGGAAACGTTGAGCCTACTG 1216
Query 1334 AATTATTGGCAGACATGGATAGCCAGATATCAAAGGCTAAGGAAGAAGCATTTAGTAGAA 1393
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1217 AATTATTGGCAGACATGGATAGCCAGATAGCAAAGGCTAAGGAAGAAGCATTTAGTAGAA 1276
Query 1394 AAGATATATTGGACCGAGTCGAGAAATGGATGTCAGCTTGTGAGGAAGAGAGCTGGCTAG 1453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 AAGATATATTGGACCGAGTCGAGAAATGGATGTCAGCTTGTGAGGAAGAGAGCTGGCTAG 1336
Query 1454 AAGACTACAATCGGGATCAGAACAGGTACAGCGCAAGCAGAGGTGCACACTTGAATCTCA 1513
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1337 AAGACTACAATCGGGATCAGAACAGGTACAGTGCAAGCAGAGGCGCACACTTGAATCTCA 1396
Query 1514 AGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTGCCATGGTTGACACATTAG 1573
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1397 AGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTGCCATGGTTGACACATTGG 1456
Query 1574 TTGCCAAGACCCGGGCTTGGGAAGAAGAACACAGCATGTCCTTTGCCTACGATGGTGTTC 1633
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1457 TTGCCAAGACCCGGGCGTGGGAAGAGGAACACAGCATGTCCTTTGCCTACGATGGTGTTC 1516
Query 1634 CTCTGCTAGCTATGCTAGACGAGTACGGTATGCTTAGGCAAGAACGAGAAGAGGAGAAAC 1693
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1517 CTCTGCTAGCAATGCTAGACGAGTATGGTATGCTTAGGCAAGAACGAGAAGAGGAGAAAC 1576
Query 1694 GGAGGCTGAGGGAACAAAAGAAGGTTCAAGAACAGCCACACGTAGAGCAAGAATCTGCCT 1753
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1577 GGAGGCTGAGGGAACAAAAGAAGGTTCAAGAACAGCCACACATAGAGCAAGACTCTGCCT 1636
Query 1754 TTAGCACCAGGCCAAGCCCTGCAAGACCGGTCAGTGCTAAGAAAACGGTGGGGCCACGAG 1813
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1637 TTAGCACCAGGCCAAGCCCTGCTAGACCGGTCAGTGCTAAGAAAACGGTGGGGCCACGAG 1696
Query 1814 CTAACAACGGAGGAGCCAATGGAACAC-ATAACCGGCGTTTATCTTTGAATGCAAACCAG 1872
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1697 CTAACAACGGAGGAGCCAATGGAACACCA-AACCGGCGTTTATCTTTGAATGCAAACCAG 1755
Query 1873 AATGGAAGCAGGTCTACTGCAAAAGAAGCAGGGAGAAGGGAGACTCTCAACAGGCCGGCT 1932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 AATGGAAGCAGGTCTACTGCAAAAGAAGCAGGGAGAAGGGAGACTCTCAACAGGCCGGCT 1815
Query 1933 GCTCCTACAAACTACGTTGCCATTTCGAAAGAGGAAGCTGCTTCATCTCCAGTTTCTGGT 1992
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 1816 GCTCCCACAAACTACGTTGCCATTTCGAAAGAGGAAGCTGCTTCATCACCGGTTTCTAGT 1875
Query 1993 GCTGCAGATCATCAAGTTCCAGCTTCACCATGATGAATa-aaaaaatgaaaaa-GATGTG 2050
|||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||
Sbjct 1876 GCTGTAGATCATCAAGTTCCAGCTTCACCATGATGATTTGAAAAAATGAAAAAAGATCTG 1935
Query 2051 TAATTTTCAGTGTTTGAGTT-GGTTTAGGAAGAAAAGGCTCTATGAAACACCTGAAAGAA 2109
||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1936 TAATTTTCACTGTTTGAGTTTGGTTTAGGAAGAAAAGTCTCTATGAAACACCTGAAAGAA 1995
Query 2110 GACAAAAAGACATTTGAGAGTAGAATGGTGTACTAGAAtgtgtatgtgtgtgtgtgtTTT 2169
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1996 GACAAAA-GACATTTGAGAGTAGAATGGTGTACTAGAATGTGTATGTGTGTGTGT-TTT- 2052
Query 2170 GTTAATGTTATTTTGATAGTTG 2191
|||| |||| ||||||||||||
Sbjct 2053 GTTAGTGTTGTTTTGATAGTTG 2074
Score = 1707 bits (924), Expect = 0.0
Identities = 1003/1041 (96%), Gaps = 5/1041 (0%)
Strand=Plus/Plus
Query 32 GATTTTATCTCACTCTCAATAGTGTTAGTATTGTCACAGAGAAAGCTTCAGATCTAGAAG 91
||||||||||||||||||||||||| ||| |||| | ||||| |||||||||||||||||
Sbjct 1 GATTTTATCTCACTCTCAATAGTGTGAGTTTTGTTATAGAGAGAGCTTCAGATCTAGAAG 60
Query 92 AAGAAGCAGAGTTCATAAAGAGAAACCCATTTTAAACCC-TAGAAATCAAGTGTCAATCT 150
||||||||||||| |||| || ||||||||| ||||||| |||||||| |||||||||||
Sbjct 61 AAGAAGCAGAGTTTATAAGGACAAACCCATTCTAAACCCTTAGAAATCCAGTGTCAATCT 120
Query 151 CGGAAACCTTCTGATTCCGCAACAATGGCAGTTACAGATACTGAAAGTCCTCATCTTGGG 210
||||||||| |||||| || ||||||||||| |||||| ||||||||||||||||||||
Sbjct 121 CGGAAACCTACTGATTTTGCGACAATGGCAGTCACAGATGCTGAAAGTCCTCATCTTGGG 180
Query 211 GAAATTACTTGTGGTACCTTACTTGAGAAGTTGCAGGAAATCTGGGATGAAGTTGGTGAG 270
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAAATTACTTGTGGTACCTTACTTCAGAAGTTGCAGGAAATCTGGGATGAAGTTGGTGAG 240
Query 271 AGTGATGATG-AACGAGACAAACTGCTTCTTCAGATAGAGCAAGAGTGTCTTGACGTTTA 329
|||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 AGTGATGA-GCAACGAGACAAACTGCTTCTTCAGATAGAGCAAGAGTGTCTTGATGTTTA 299
Query 330 CAAGAGAAAAGTCGAGCAGGCTGCGAAATCCCGAGCTGAGCTTCTTCAAACCTTGTCAGA 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAGAGAAAAGTCGAGCAGGCTGCGAAATCCCGAGCTGAGCTTCTTCAAACCTTGTCAGA 359
Query 390 TGCTAATGCTGAACTTTCCAGCCTCACAA-TGTCTCTTGGAGACAAAAGCTTAGTTGGCA 448
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 360 TGCTAATGCTGAACTTTCCAGCCTCACAACT-TCTCTTGGAGAAAAAAGCTTAGTTGGCA 418
Query 449 TTCCGGATAAGTCTTCAGGAACGATTAAAGAACAACTTGCTGCAATAGCACCGGCTCTTG 508
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 419 TTCCGGATAAGTCTTCAGGAACGATTAAAGAACAACTTGCTGCTATAGCACCAGCTCTTG 478
Query 509 AACAACTGTGGCAACAGAAAGAGGAGAGAGTCCGAGAGTTCTCTGATGTACAATCACAGA 568
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 AACAACTGTGGCAACAGAAAGAGGAGAGAGTCCGAGAGTTCTCTGATGTACAATCACAAA 538
Query 569 TTCAGAAGATATGTGGAGATATTGCTGGAGGTTTGAGCAATGAGGTTCCTATAGTCGATG 628
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTCAGAAGATATGTGGAGAGATTGCTGGAGGTTTGAGCAATGAGGTTCCTATAGTCGATG 598
Query 629 AGTCTGATTTGTCACTGAAGAAATTAGACGATTTCCAGAGCCAACTCCAAGAGCTCCAGA 688
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTCTGATTTGTCACTGAAAAAATTAGACGATTTCCAGAGCCAACTCCAAGAGCTCCAGA 658
Query 689 AAGAGAAGAGTGACAGGCTGCGCAAGGTGTTAGAGTTTGTGAGTACTGTTCATGATCTAT 748
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 AAGAGAAGAGTGACAGGCTGCACAAGGTGTTAGAGTTTGTGAGTACTGTTCATGATCTAT 718
Query 749 GTGCTGTTCTTGGTTTGGATTTCTTAAGCACCGTCACCGAAGTTCATCCGAGCTTAGATG 808
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 719 GTGCCGTTCTTGGTTTGGATTTCTTAAGCACCGTCACTGAAGTTCATCCGAGCTTAGATG 778
Query 809 AAGATACCAGTGTCCAGTCTAAGAGCATTAGCAATGAGACTCTTTCAAGGTTGGCTAAAA 868
|||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 779 AAGAAACCGGTGTCCAGTCTAAGAGCATTAGCAATGAGACACTTTCAAGGTTGGCTAAAA 838
Query 869 CCGTCTTGACTCTTAAAGATGATAAGAAGCAAAGACTTCAAAAGCTTCAAGAGCTGGCTA 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCGTCTTGACTCTTAAAGATGATAAGAAGCAAAGACTTCAAAAGCTTCAAGAGCTGGCTA 898
Query 929 CTCAGCTAATTGACCTGTGGAATCTGATGGATACTCCTGATGAGGAAAGAGAGCTTTTTG 988
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 899 CTCAGCTAATTGACCTGTGGAATCTGATGGATACTCCTGATGAGGAAAGGGAACTTTTTG 958
Query 989 ATCATGTTACCTGTAACATTTCATCTTCAGTCGATGAGGTCACTGTGCCAGGTGCTCTTG 1048
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 959 ATCATGTTACCTGTAACATTTCATCTTCAGTCGATGAGGTCACTATGCCAGGTGCTCTTG 1018
Query 1049 CACGTGATTTGATTGAGCAGG 1069
|||||||||||||||||||||
Sbjct 1019 CACGTGATTTGATTGAGCAGG 1039
> Ahg492126 jgi|Araly1|492126|fgenesh2_kg.7__1559__AT4G26760.1
Length=1991
Score = 917 bits (496), Expect = 0.0
Identities = 808/958 (84%), Gaps = 23/958 (2%)
Strand=Plus/Plus
Query 124 TAAACCC-TAGAAATCAAGTGTC-A-ATCTCGGAAACCTTCTGA-TTCCGCAACAATGGC 179
||||||| | ||| |||| | || | || | ||||| ||| ||| || | ||| ||||||
Sbjct 122 TAAACCCTTTGAATTCAA-TATCGATAT-TAGGAAATCTTTTGACTT-CACAAGAATGGC 178
Query 180 AGTTACAGATACTGAAAGTCCTCATCTTGGGGAAATTACTTGTGGTACCTTACTTGAGAA 239
||| ||||| ||||| ||||| |||||| ||||| |||||||| |||||||| ||||
Sbjct 179 AGTGACAGAGGTTGAAAATCCTCTTCTTGGAGAAATCACTTGTGGCACCTTACTACAGAA 238
Query 240 GTTGCAGGAAATCTGGGATGAAGTTGGTGAGAGTGATGATGAACGAGACAAACTGCTTCT 299
||||||||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||
Sbjct 239 GTTGCAGGAAATCTGGGATGAGGTTGGGGAGAGTGATGAGGAACGAGACAAATTGCTTCT 298
Query 300 TCAGATAGAGCAAGAGTGTCTTGACGTTTAC-AAGAGAAAAGTCGAGCAGGCTGCGAAAT 358
|||||| ||| ||||||||||| | |||||| || || ||||| |||| ||| || ||||
Sbjct 299 TCAGATTGAGGAAGAGTGTCTTAATGTTTACAAAAAG-AAAGTTGAGCTGGCCGCAAAAT 357
Query 359 CCCGAGCTGAGCTTCTTCAAACCTTGTCAGATGCTAATGCTGAACTTTCCAGCCTCACAA 418
| || || ||||||||||| || ||||| ||||| | || ||||||||||| |||||||
Sbjct 358 CTCGTGCAGAGCTTCTTCAGACTTTGTCGGATGCCACTGTTGAACTTTCCAATCTCACAA 417
Query 419 -TGTCTCTTGGAGACAAAAGCT-TAGTTGGCATTCCGGATAAGTCTTCAGGAACGATTAA 476
|| |||| || || ||||||| || ||| |||||| |||||| ||||||||||||| ||
Sbjct 418 CTG-CTCTCGGGGAAAAAAGCTATA-TTGACATTCCAGATAAGACTTCAGGAACGATCAA 475
Query 477 AGAACAACTTGCTGCAATAGCACCGGCTCTTGAACAACTGTGGCAACAGAAAGAGGAGAG 536
|||||||||| ||||||||||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 476 AGAACAACTTTCTGCAATAGCACCTGCGCTTGAACAACTTTGGCAACAGAAAGAGGAAAG 535
Query 537 AGTCCGAGAGTTCTCTGATGTACAATCACAGATTCAGAAGATATGTGGAGATATTGCTGG 596
|||||| | ||| |||||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 536 AGTCCGGGCGTTTTCTGATGTACAATCACAGATTCAGAAGATATGTGAAGAGATCGCTGG 595
Query 597 AGGTTTGAGCAATG-AGGTTCCTATAGTCGATGAGTCTGATTTGTCACTGAAGAAATTAG 655
|| |||| ||||| | | | | | || ||||||||||| ||||| ||||||| |||||
Sbjct 596 CGGATTGAACAATGGACCT-CATGTGGTTGATGAGTCTGACTTGTCTCTGAAGAGATTAG 654
Query 656 ACGATTTCCAGAGCCAACTCCAAGAGCTCCAGAAAGAGAAGAGTGACAGGCTGC-GCAAG 714
| || |||||||| ||||||||||||||||||||||||||||||| ||| | | | |||
Sbjct 655 ATGACTTCCAGAGAAAACTCCAAGAGCTCCAGAAAGAGAAGAGTGATAGGTTACAGAAAG 714
Query 715 GTGTTAGAGTTTGTGAGTACTGTTCATGATCTATGTGCTGTTCTTGGTTTGGATTTCTTA 774
|| | ||||||||||| || || |||||||||||||| || ||||| || |||||||||
Sbjct 715 -TGCTCGAGTTTGTGAGCACGGTGCATGATCTATGTGCCGTCCTTGGCTTAGATTTCTTA 773
Query 775 AGCACCGTCACCGAAGTTCATCCGAGCTTAGATGAAG-ATACCAGTGTCCAGTCTAAGAG 833
||||| ||||| ||||||||||||||||||||||||| | | |||| || | |||||
Sbjct 774 AGCACTGTCACTGAAGTTCATCCGAGCTTAGATGAAGCAAATG-GTGTTCAAACCAAGAG 832
Query 834 CATTAGCAATGAGACTCTTTCAAGGTTGGCTAAAACCGTCTTGACTCTTAAAGATGATAA 893
|||||||||||| || ||| | ||||||||||| || |||||| |||||||||| |||||
Sbjct 833 CATTAGCAATGAAACACTTGCGAGGTTGGCTAAGACTGTCTTGGCTCTTAAAGAGGATAA 892
Query 894 GAAGCAAAGACTTCAAAAGCTTCAAGAGCTGGCTACTCAGCTAATTGACCTGTGGAATCT 953
|| |||||||||| |||||||||||||||| ||||||||| ||| ||| || ||||||||
Sbjct 893 GATGCAAAGACTTAAAAAGCTTCAAGAGCTAGCTACTCAGTTAACTGATCTATGGAATCT 952
Query 954 GATGGATACTCCTGATGAGGAAAGAGAGCTTTTTGATCATGTTACCTGTAACATTTCATC 1013
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 953 CATGGATACTCCTGATGAGGAAAGGGAGCTTTTTGATCATGTTACCTGTAACATTTCAGC 1012
Query 1014 TTCAGT-CGATGAGGTCACTGTGC-CAGGTGCTCTTGCACGTGATTTGATTGAGCAGG 1069
||||| | |||| || |||| | | |||||||| |||| |||| |||| || ||||
Sbjct 1013 ATCAGTTC-ATGAAGTGACTGC-CTCTGGTGCTCTCGCACTTGATCTGATCGAACAGG 1068
Score = 706 bits (382), Expect = 0.0
Identities = 622/739 (84%), Gaps = 12/739 (2%)
Strand=Plus/Plus
Query 1154 AGGCTGAGGTGGAAGTTGATAGGCTTGACCAGCTGAAAGCTAGCCGAATGAAAGAAATTG 1213
||||||||||| |||| ||||||||||| || |||||| ||||| ||||||| |||||||
Sbjct 1066 AGGCTGAGGTGAAAGTGGATAGGCTTGATCAACTGAAATCTAGCAGAATGAAGGAAATTG 1125
Query 1214 CGTTCAAGAAGCAATCTGAGCTTGAAGAGATATATGCTCGTGCCCATGTAGAAGTTAACC 1273
| || || ||||||||||||||||| ||||||||||||||||| || ||||| | || |
Sbjct 1126 CATTTAAAAAGCAATCTGAGCTTGAGGAGATATATGCTCGTGCGCACATAGAAATAAAAC 1185
Query 1274 CGGA-ATCTGCTCGTGAGAGAATCATGTCGCTGATTGATTCTGGAAACGTTGAGCCTACT 1332
| || | || ||||||||| ||||||||| |||||||| ||||||| ||| ||||||
Sbjct 1186 CAGAGGT-TGTTCGTGAGAGGATCATGTCGTTGATTGATGCTGGAAATACTGAACCTACT 1244
Query 1333 GAATTATTGGCAGACATGGATAGCCAGATATCAAAGGCTAAGGAAGAAGCATTTAGTAGA 1392
|| || |||| ||||||||||| ||||| ||||||| ||||||||||| |||||||||
Sbjct 1245 GAGCTACTGGCTGACATGGATAGTCAGATCGCAAAGGCCAAGGAAGAAGCCTTTAGTAGA 1304
Query 1393 AAAGATATATTGGACCGAGTCGAGAAATGGATGTCAGCTTGTGAGGAAGAGAGCTGGCTA 1452
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AAAGAAATTTTGGACCGAGTCGAGAAATGGATGTCAGCTTGTGAGGAAGAGAGCTGGCTA 1364
Query 1453 GAAGACTACAATCGGGATCAGAACAGGTACAGCGCAAGCAGAGGTGCACACTTGAATCTC 1512
|||||||||||||| |||||||||||||| || |||||| ||||||| || |||||||||
Sbjct 1365 GAAGACTACAATCGAGATCAGAACAGGTATAGTGCAAGCCGAGGTGCGCATTTGAATCTC 1424
Query 1513 AAGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTGCCATGGTTGACACATTA 1572
|||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||
Sbjct 1425 AAGAGAGCTGAGAAAGCTCGGACTCTGGTCAGCAAGATTACTGCAATGGTTGACACATTG 1484
Query 1573 GTTGCCAAGACCCGGGCTTGGGAAGAAGA-ACACAGCATGTCCTTTGCCTACGATGGTGT 1631
||||| || |||||||| |||||||| || | |||| |||||||||| || ||||| ||
Sbjct 1485 GTTGCTAAAACCCGGGCATGGGAAGAGGATA-ACAGTATGTCCTTTGAGTATGATGGCGT 1543
Query 1632 TCCTCTGCTAGCTATGCTAGACGAGTACGGTATGCTTAGGCAAGAACGAGAAGAGGAGAA 1691
||||||||| || |||||||| || ||| |||||||||||||||||||||||| |||||
Sbjct 1544 TCCTCTGCTTGCCATGCTAGATGAATACACTATGCTTAGGCAAGAACGAGAAGATGAGAA 1603
Query 1692 ACGGAGGCTGAGGGAACAAAAGAAGGTTCAAGAACAGCCACACGTAGAGCAAGAATCTGC 1751
|||||||| | || || |||||| ||||||||||||||| ||| ||||| || ||
Sbjct 1604 GCGGAGGCTAAAAGAGCAGAAGAAGCAGCAAGAACAGCCACACACAGATCAAGACTCCGC 1663
Query 1752 CTTTAGCACCAGGCCAAGCCCTGCAAGACCGGTCAGTGCTAAGAAAACGGTGGGGCCACG 1811
|||| | | | |||||| | |||||||| || ||||| |||||| ||||||| ||||
Sbjct 1664 CTTTGGGTCTAAACCAAGCGCAGCAAGACCCGTTAGTGCCAAGAAACCGGTGGGAACACG 1723
Query 1812 AGCTAACAACGGAGGAG--C-CAATGGAACACATAACCGGCGTTTATCTTTGAA-TGCAA 1867
||| ||||||||||| | ||| | ||| | | | | ||||||||| |||| | |||
Sbjct 1724 AGC---CAACGGAGGAGGGCTCAACGAAACTCCTGTCAGACGTTTATCTATGAACT-CAA 1779
Query 1868 ACCAGAATGGAAGCAGGTC 1886
|||||| ||||||| |||
Sbjct 1780 GCCAGAACGGAAGCAAGTC 1798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83722358510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5