BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55240.1
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495609 jgi|Araly1|495609|fgenesh2_kg.8__1425__AT5G55240.1 1133 0.0
> Ahg495609 jgi|Araly1|495609|fgenesh2_kg.8__1425__AT5G55240.1
Length=737
Score = 1133 bits (613), Expect = 0.0
Identities = 695/736 (94%), Gaps = 0/736 (0%)
Strand=Plus/Plus
Query 37 aatgacgtcgatggagaggatggagagagacgcaatggagacGGTGGCTCCATACGCTCG 96
||||||| ||||||||||||||||| |||||||||||||||| |||||||| |||||||
Sbjct 2 AATGACGACGATGGAGAGGATGGAGTGAGACGCAATGGAGACAGTGGCTCCCTACGCTCC 61
Query 97 GGTGACTTATCACCGCCGTGTTCGTGGTGACTTGGATGACACACTTCCTAAACCTTATTT 156
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 62 GGTGACTTATCACCGCCGTGTTCGTGGTAACTTGGACGACACACTTCCTAAACCTTATTT 121
Query 157 GCCGAGAGCACTACAAGCACCTGACATGGAACACCCACAAGGAACACCAGATCATAGACA 216
|||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct 122 GCCGAGAGCACTTCAAGCACCTGACATGGAGCACCCGCAAGGAACACCAGAGCATAGGCA 181
Query 217 TAATGGCCTTAGTGTTCTTCAGCAACATGTCGCTTTCTTCGATTTGGACAATAATGGCAT 276
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 182 TAATGGCCTAAGTGTTCTTCAGCAACATGTCGCTTTCTTTGATTTGGATGATAATGGCAT 241
Query 277 CATTTATCCCTTTGAAACCTTCTCTGGGTTCCGGTTACTCGGTTTCAATTTACTCGCGTC 336
||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||||
Sbjct 242 TATTTATCCCTTTGAAACCTTCACTGGATTCCGGTTACTTGGTTTCAATTTACTAGCGTC 301
Query 337 GCTTATCTTGGCTGCTGGTATCAACATAGCTCTTAGCTATGCTACTCTCCCGGGATGGTT 396
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GCTTGTCTTGGCTGCTGGTATCAACATAGCTCTTAGCTATGCTACTCTCCCGGGATGGTT 361
Query 397 ACCGTCTCCGTTCTTCCCTATATATATTCACAACATTCACAAGGCAAAGCACGGAAGCGA 456
|||||||||||| || ||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 362 ACCGTCTCCGTTATTTCCTATATATATACACAACATTCACAAGGCAAAACACGGAAGTGA 421
Query 457 CTCTAAAACATATGACAATGAAGGAAGGTATACACCAGCGAATCTTGAGTTGATGTTTAG 516
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CTCTAAAACGTATGACAATGAAGGAAGGTATACACCAGCGAATCTTGAGTTGATGTTTAG 481
Query 517 CAAATACGCGAGGACCATACCAGACAAGTTGAGTCTTGGAGAGCTATGGGACATGACCGA 576
|||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 482 CAAATACGCGAGGACCGTGTCAGACAAGTTGAGTCTTGGAGAACTATGGGACATGACCGA 541
Query 577 AGGAAACCGCGATGCCTTTGACTTTTTTGGATGGTTAGCGAGCAAAGTGGAATGGGGTGT 636
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 542 AGGGAACCGCGATGCCTTTGACTTTTTTGGATGGTTAGCGAGCAAGGTGGAATGGGGAGT 601
Query 637 ATTGTATGCATTAGCGAGTGATGAAGAAGGATTCTTGTCTAAAGAAGCCATAAGGCGGTG 696
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 602 GTTGTATGCGTTAGCGAGTGACGAAGAAGGATTCTTGTCTAAAGAAGCCATAAGGCGGTG 661
Query 697 CTTCGATGGGAGCTTGTTCGAGTATTGTGCCAAGAACTACGCTGAGATCAAGGAGTACAA 756
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 662 CTTAGATGGAAGCTTGTTCGAGTATTGTGCGAAGAACTACGCTGAGATCAAGGAGTACAA 721
Query 757 GACGTACTACTGATCA 772
||||||||||||||||
Sbjct 722 GACGTACTACTGATCA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35721173229
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5