BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55250.1
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495611 jgi|Araly1|495611|fgenesh2_kg.8__1427__AT5G55250.1 1971 0.0
> Ahg495611 jgi|Araly1|495611|fgenesh2_kg.8__1427__AT5G55250.1
Length=1262
Score = 1971 bits (1067), Expect = 0.0
Identities = 1191/1252 (95%), Gaps = 4/1252 (0%)
Strand=Plus/Plus
Query 1 GTCGTCTCCTCGAGCTTGTCTCATTCACaaaaagaaggtgtagagaaagttaaagagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GTCGTCTCCTCGAGCTTGTCTCATTCACAAAAAGAAGGTGTAGAGAAAGATAAAGAGAGA 60
Query 61 aggagagatc--catagagaaagagaaagagaaTGGGTTCTAAGGGAGACAACGTTGCTG 118
|||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 61 AGGAGAGATCAACATAGAG--AGAGAAATAGAATGGGTTCTAAGGGAGATAACGTTGCTG 118
Query 119 TATGTAACATGAAGCTCGAGAGACTTCTCAGCATGAAAGGTGGCAAAGGACAAGACAGCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TATGTAACATGAAGCTCGAGAGACTTCTCAGCATGAAAGGTGGCAAAGGACAAGACAGCT 178
Query 179 ACGCCAATAACTCTCAAGCTCAGGCAATGCATGCACGGTCCATGCTTCACCTCCTAGAGG 238
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 179 ATGCCAATAACTCTCAAGCTCAGGCGATGCATGCACGGTCCATGCTTCACCTCTTAGAGG 238
Query 239 AAACACTTGAAAATGTTCACCTCAACTCCTCCGCCAGTCCGCCACCGTTCACGGCGGTTG 298
|||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 239 AAACACTTGACAATGTCCACCTAAACTCCTCCGCCAGTCCGCCACCGTTTACGGCTGTTG 298
Query 299 ATCTTGGCTGTTCCTCCGGCGCAAATACTGTCCACATAATCGATTTCATAGTCAAACATA 358
|||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 299 ATCTCGGCTGCTCCTCCGGCGCAAACACCGTCCACATAATCGATTTCATAGTCAAACACA 358
Query 359 TCTCTAAGAGGTTTGATGCTGCCGGAATCGACCCTCCGGAGTTCACAGCTTTCTTCTCCG 418
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCTCTAAGCGGTTTGATGTTGCCGGAATCGACCCTCCGGAGTTCACAGCTTTCTTCTCCG 418
Query 419 ATCTCCCAAGCAACGACTTCAACACGCTTTTCCAGCTTCTTCCACCACTTGTCTCTAACA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ATCTCCCAAGCAACGACTTCAACACGCTTTTCCAGCTTCTTCCACCACTTGTCTCTAACT 478
Query 479 CTTGCATGGAGGAGTGTCTTGCTGCCGACGGGAACCGCTCCTACTTCGTTGCTGGTGTTC 538
|||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 479 CTTGCATGGAGGAGTGCCTTGCTGCAGACGGAAACCGCTCCTACTTCGTCGCTGGTGTTC 538
Query 539 CCGGATCGTTTTACCGGCGACTTTTTCCAGCGAGAACCATTGACTTTTTCCACTCTGCCT 598
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 539 CCGGATCGTTTTACCGGCGACTTTTTCCGGCGAGAACCATTGCCTTTTTCCACTCTGCCT 598
Query 599 TCTCCTTGCATTGGCTCTCTCAGGTGCCGGAAAGTGTGACGGATAGGAGATCGGCGGCGT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTCCTTGCATTGGCTCTCTCAGGTGCCGGAAAGTGTGACGGATAGGAGATCGGCGGCGT 658
Query 659 ACAATAGAGGGAGAGTTTTCATACACGGTGCCGGAGAGAAGACAACAACGGCATACAAAC 718
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 659 ACAATAGAGGGAGAGTTTTCATACACGGCGCCGGAGAGAAGACAGCGACGGCATACAAAC 718
Query 719 GGCAGTTTCAGGCCGACTTAGCGGAGTTTTTGAGGGCAAGAGCGGCGGAGGTTAAGAGAG 778
||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 GGCAGTTTCAGGCGGACTTGGCGGAATTTTTGAGGGCAAGAGCGGCGGAGGTTAAGAGAG 778
Query 779 GTGGGGCCATGTTCCTGGTCTGTCTTGGTCGTACCTCTGTGGATCCCACCGACCAGGGTG 838
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 779 GTGGGGCCATGTTCCTGGTTTGTCTCGGTCGTACCTCTGTGGATCCCACCGACCAGGGTG 838
Query 839 GTGCCGGTCTACTCTTCGGCACTCATTTTCAGGACGCTTGGGACGACCTTGTCCGCGAGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GTGCCGGTCTACTCTTCGGCACTCATTTTCAGGACGCTTGGGACGACCTTGTCCGCGAGG 898
Query 899 GTTTGGTAGCAGCAGAGAAACGAGATGGATTCAATATCCCGGTGTACGCACCAAGCTTGC 958
|||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 GTTTGGTAGCGGCTGAGAAACGAGATGGATTCAATATCCCGGTATACGCACCAAGCTTGC 958
Query 959 AAGATTTCAAGGAAGTAGTTGACGCCAACGGCTCATTTGCAATTGATAAGCTGGTAGTAT 1018
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |
Sbjct 959 AAGATTTCAAGGAAGTAGTTGAAGCCAACGGCTCATTTGCAATTGAGAAGCTGGTTGTTT 1018
Query 1019 ACAAAGGAGGGAGTCCACTTGTGGTGAATGAGCCAGACGATGCATCAGAAGTTGGTCGTG 1078
|||||||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||
Sbjct 1019 ACAAAGGAGGGAGTCCGCTTGTGGTGAGTGAACCAGACGATGCATCCGAGGTTGGTCGTG 1078
Query 1079 CCTTTGCTAGTAGTTGTCGGAGTGTGGCCGGAGTGCTCGTGGAAGCTCACATAGGCGAAG 1138
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1079 CCTTTGCTAGTAGTTGTCGAAGTGTTGCCGGAGTGCTAGTGGAAGCTCACATAGGCGAAG 1138
Query 1139 AGCTAAGCAATAAACTGTTCTCACGAGTTGAAAGCCGAGCCACTAGCCATGCCAAAGATG 1198
||||||||||| | ||||||||||| |||| | |||||||||||||||| ||||||||||
Sbjct 1139 AGCTAAGCAATGAGCTGTTCTCACGTGTTGGACGCCGAGCCACTAGCCACGCCAAAGATG 1198
Query 1199 TCTTGGTGAATTTGCAGTTCTTCCACATTGTCGCTTCTTTGTCTTTTACTTA 1250
||||||||| |||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1199 TCTTGGTGACTTTGCAGTTCTTCCACATCGTCGCTTCTTTATCTTTTACTTA 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51160954614
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5