BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55270.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495613 jgi|Araly1|495613|fgenesh2_kg.8__1429__AT5G55270.1 1321 0.0
Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1 811 0.0
Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1 793 0.0
Ahg495535 jgi|Araly1|495535|fgenesh2_kg.8__1351__AT5G54550.1 749 0.0
Ahg497341 jgi|Araly1|497341|fgenesh2_kg.236__1__AT5G55880.1 665 0.0
Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1 593 8e-169
Ahg495669 jgi|Araly1|495669|fgenesh2_kg.8__1485__AT5G55890.1 573 1e-162
Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1 514 6e-145
> Ahg495613 jgi|Araly1|495613|fgenesh2_kg.8__1429__AT5G55270.1
Length=904
Score = 1321 bits (715), Expect = 0.0
Identities = 843/906 (93%), Gaps = 4/906 (0%)
Strand=Plus/Plus
Query 30 AATCTCTTGCTTTTCGCTTAAGAACATTACTCATGTCTCTGCTTCTCAACCAGCCCTTGA 89
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCTCTTGGTTTTCGCTTAAGAACATTACTCATGTCTCTGCTTCTCAACCAGCCCTTGA 60
Query 90 AGCTCTGCTTTCAGAGCAAACCTGGGTTGGTAAGATCCTCTCCTCCTCTCTCTAATGGCT 149
|| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATCTGCTTTCGGAGGAAACCTGGGTTGGTAAGATCCTCTCCTCCTCTCTCTAATGGCT 120
Query 150 TCTCAACTTCCAAATTGCAAACCCCTCCTTGTACTGTCATTGACGCTGATCCTTGTGGAA 209
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TCTCAACTTCCTTGTTGCAAACCCCTCCTTGTACCATCATTGACGCTGATCCTTGTGGAA 180
Query 210 GGGGTCTCGGCAAACTCTTCATTTACTATCATAATGAATCTGAAT-ACACTGGTTTGGAA 268
|||||||||| |||||| || || | ||||||||||||| | || ||||| |||||||
Sbjct 181 GGGGTCTCGGAAAACTCGTCGTTAAATATCATAATGAATAT-CATCTCACTGATTTGGAA 239
Query 269 AAGAAGGTGGCTATGGATTTGGTGGATATTCCAATGGCAACGATTGGGTCATCCCATGGC 328
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 AAGAAGGTGGCTATGGAGTTGGTGGATATTCCAATGGCAACGATCGGGTCATCCCATGGT 299
Query 329 TGGGTAGCTACTTTGAAGGAAGACGGTATATTGCGTCTCCAAGATGATCTAAACCCGGTT 388
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
Sbjct 300 TGGGTAGCTACTTTGAAGGAAGACGGAATACTGCGTCTCCAAGATGATCTAAACCCAAAT 359
Query 389 GCATCGTATACAGAACCAAAACGCATTCCCCTGTCTCCCCTCGTAACTCTGCCTCATTGC 448
||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||||||
Sbjct 360 GCATCGTATACAGAACCAAAACGTATTCCCCTGCCTCCTCTTGTAACTCTGCCTCATTGC 419
Query 449 CAAACTCAAATCGTTACCAATGTGTCATTGTCCTCATCTTCTCCTGAGGATGAGGAATGT 508
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 420 CAAACTCAAATCGTTACCAATGTGTCAATGTCCTCATCTTCTCCTGAGGATGAGGACTGT 479
Query 509 GTTGTGGCTGTCAAGTTCTTGGGACCTCAACTCAGCTTTTGCAGACCTGCTCAAAGTAAC 568
|| ||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||
Sbjct 480 GTCGTGGCTGTCAAGTTCTTGGGACCTCAAATAAGCTTTTGCAGACCGGCTAAAAGTAAT 539
Query 569 TCCAAGTGGATCAACATCAGAATCGCAAACCCTTGCTTCTACTCCTCTCGTGTCATGTTT 628
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 TCCGAGTGGATCAACATCAGAATCGCAAACCCCTGCTTCTACTCCTCTCGTGTCATGTTT 599
Query 629 TCGAAGAAAGATGAGATGTTTCGCATACTCGGATCTGGAGGCCATATCATTGGATCATGG 688
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCGGAGAAAGATGAGATGTTTCGCATACTCGGATCTGGAGGCCATATCATTGGATCATGG 659
Query 689 GATCTCCACACACACAATCAAAAACCGTTTCAAAGATTGCGGTTCAAAAACCTTCCCAAG 748
|||||||||||||| || ||||| || ||||| || |||| |||| |||||||||||||
Sbjct 660 GATCTCCACACACAGAAGCAAAACCCATTTCAGAGGTTGCAGTTCCTAAACCTTCCCAAG 719
Query 749 CTGACAAAGACCAAACAAGAGCTGATGGATTCGTGCTACAAAAGCGAACACTTGGTGGAG 808
|||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||
Sbjct 720 CTGACAAAGACCAAACGAGAGCTTATGGATTCGTGCTACAAAAGCGAACACTTGTTGGAG 779
Query 809 TCAAGAACCACCGGTGAAACATTT-TTGGTTAAGTGGTATAGGAAGGCCGTCTGGAGAGG 867
|||||||||||||||||||| ||| || ||||||||||||||||| ||||||||||||||
Sbjct 780 TCAAGAACCACCGGTGAAAC-TTTCTTAGTTAAGTGGTATAGGAAAGCCGTCTGGAGAGG 838
Query 868 TATGTCGAAACTGAAAACAAAAGCTTTAATGGTATTCAAGCTAGACGACAAAGGAAACGC 927
||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||
Sbjct 839 TATGTCGAAACTGAAAACAAAAGCTTTAATGGTGTTCAAGCTAGACTATAAAGGGAACGC 898
Query 928 TGTTTA 933
||||||
Sbjct 899 TGTTTA 904
> Ahg495522 jgi|Araly1|495522|fgenesh2_kg.8__1338__AT5G54320.1
Length=1110
Score = 811 bits (439), Expect = 0.0
Identities = 833/1012 (82%), Gaps = 72/1012 (7%)
Strand=Plus/Plus
Query 68 CTGCTTCTCAACCAGCCCTTGAAGCT-C--TGCTTTCAGAGCAAACCTGGGTTGGTAAGA 124
|||||||||||||| ||||||||||| | ||||||| ||| ||||||| ||||||||||
Sbjct 7 CTGCTTCTCAACCAACCCTTGAAGCTACTATGCTTTCGGAGGAAACCTGTGTTGGTAAGA 66
Query 125 TCCTCTCCTCCTCTCTCT-A--ATGGCTTCTCAACTTCCAAATTGCAAACCCCTCCTTG- 180
| ||||||| ||||||| | ||||||| ||| |||| ||||||| ||||||||
Sbjct 67 GCATCTCCTCTTCTCTCTAATGATGGCTTATCATCTTCTTTGCTGCAAACTCCTCCTTGT 126
Query 181 TAC-T-GTCATTGACGCTGATCCTTGTGGAAG----G-G-GTCTCGGCAAACTCTTCATT 232
| | | |||| | |||| | | ||||||||| | | || |||||| | |||
Sbjct 127 TTCATCGTCA--G-CGCTAAACGTTGTGGAAGACTTGCGAAAGAGGGAAAACTCGTGATT 183
Query 233 TACTATCATAATGAATCTGAATACACTGGTTTGGAAAAGAAGGTGGCTATGG-ATT-TGG 290
| ||| | ||||| ||| | |||| |||||| ||||||||| |||||| || | |
Sbjct 184 TTGAATCCTTATGAAGATGACTGCACTTCTTTGGATAAGAAGGTGCCTATGGCGTTGTTG 243
Query 291 T-GGATATTCCAA-TGGCAACGATTGGGTCATCCCATGGCTGGGTAGCTACTTTGA---A 345
| |||| | || | | ||| || || ||||||||||||||| |||||||||||| |
Sbjct 244 TATGATAAT-GAACTTGTAACCATCGGTTCATCCCATGGCTGGATAGCTACTTTGAGTCA 302
Query 346 GGAAGACGGTA-TATTGCGTCTCCAAGATGATCTAAACCCGGTTGCATCGTATACAGAA- 403
||| ||||| | || ||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 303 GGACGACGG-ACTACTGCGTCTCCAAGACGATCTAAACCCGGTTGCATCGGATACA-AAC 360
Query 404 CCAAAACGCATTCCCCTGTCTCCCCTCGTAACTCTGCCTCATTGCCAAACTCAAATCGTT 463
|| ||||||||||||||| |||| || |||||||| ||||||||||||||||||||||||
Sbjct 361 CCGAAACGCATTCCCCTGCCTCCTCTTGTAACTCTCCCTCATTGCCAAACTCAAATCGTT 420
Query 464 ACCAATGTGTCATTGTCCTCATCTTCTCCTGAGGATGAGGAATGTGTTGTGGCTGTCAAG 523
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 ACCAATGTGTCATTGTCCTCATCTTCTCCTGAGGATGAAGACTGTGTTGTGGCTGTCAAG 480
Query 524 TTCTTGGGACCTCAACTCAGCTTTTGCAGACCTGCTCAAAGTAACTCCAAGTGGATCAAC 583
|| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 481 TTTTTGGGACCTCAGCTCAGCTTTTGCAGACCGGCTCAAAGTAACTCCGAGTGGATCAAC 540
Query 584 ATCAGAATCGCAAACCCTTGCTTCTACTCCTCTCGTGTCATGTTTTCGAAGAAAGATGAG 643
|||||||||| ||||||||| |||||||| ||||||||||||| || ||||||||| |
Sbjct 541 ATCAGAATCGAAAACCCTTGTTTCTACTCATCTCGTGTCATGTACTCCAAGAAAGATAAC 600
Query 644 ATGTTTCGCATACTCGGATCTGGAGGCCATATCATTGGATCATGGGATCTCCACACACAC 703
|||||| |||| | |||||||||||| || |||||||| |||||||||||| |||||||
Sbjct 601 ATGTTTTGCATTCCCGGATCTGGAGGACACCTCATTGGAACATGGGATCTCCGCACACAC 660
Query 704 AATCAAAAACCGTTT-CAAAGATTGCGGTT-CAAAAACCTTCCCAAGCTGACAAAGACCA 761
|| || || ||| || || |||| ||| ||||| |||||||||||||||||||||||
Sbjct 661 AAGCATAA----TTTGCAGAGTTTGCAGTTTCAAAA-CCTTCCCAAGCTGACAAAGACCA 715
Query 762 AACAAGA-GCTGA-TGGATTCGTGCTACAAAAGCGAACACTTGGTGGAGTCAAGAACCAC 819
|||| || ||| | ||||||| |||| ||| ||||| |||||||| |||||| |||
Sbjct 716 AACA-GAAGCT-ACTGGATTCATGCTGCAAGAGCGAGCACTTGGTTGAGTCA----CCAG 769
Query 820 C-GGTGAAACATTT-TTGGTTAAGTGGTATAGGAAGGCCGTCTGG-A-GA-------GG- 867
| |||||||| ||| |||||||||||||| | |||| | ||||| | || ||
Sbjct 770 CTGGTGAAAC-TTTCTTGGTTAAGTGGTACAAGAAGTCT-TCTGGCAAGATCATCAAGGG 827
Query 868 TAT-GTCG-AAACTGAAAACAAAAGCTTTAATGGTATTCAAGCTAGACGA-CAAAGGAAA 924
||| | || ||| |||||||| ||||||||||||| |||||||| ||||| ||| |||||
Sbjct 828 TATTG-CGCAAA-TGAAAACACAAGCTTTAATGGTGTTCAAGCTTGACGAACAA-GGAAA 884
Query 925 CGCTGTTTACACTCAAGATATTGGAGATCTCTGCATTTTCCTCTCAAAGTCTGAACCATT 984
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 885 CGCGGTTTACACTCAAGACATTGGAGATCTCTGCATTTTCCTCTCAAAGTCTGAACCTTT 944
Query 985 TTGTGTACCTGTTAGCTCCTTTCCTGGTA-TGATGTTCCCTAACCAC-GTCA 1034
|||||| |||| |||||| ||||| || | || || ||||||| || ||||
Sbjct 945 TTGTGTCCCTGCTAGCTCTTTTCCCGG-ACTG-TG--CCCTAAC-ACTGTCA 991
> Ahg495358 jgi|Araly1|495358|fgenesh2_kg.8__1174__AT5G52940.1
Length=1260
Score = 793 bits (429), Expect = 0.0
Identities = 831/1017 (82%), Gaps = 60/1017 (6%)
Strand=Plus/Plus
Query 107 AAACCTGGGTTGGTAAGATC--CTCTCCTCCTCTCTCTAATGGCTTCTCAACTTCCAAAT 164
||||||| ||| |||||||| |||| |||| | |||||||||||||||||||||
Sbjct 13 AAACCTGTGTTTGTAAGATCTTCTCTTCTCC-AT-TCTAATGGCTTCTCAACTTCCTTGC 70
Query 165 TGCAAACCCCTCCTTGT-ACTGTCATTGA-CGCTGATCCTTGTGG---AAG------GGG 213
|||||| |||||||| | || ||| || | ||||||||||||||| ||| ||
Sbjct 71 TGCAAATCCCTCCTTATCAC-GTC-TTCAGCGCTGATCCTTGTGGATCAAGATACCCGGA 128
Query 214 TCTCGGCAAACTCTTCATTTAC-TATCATAATGAATCTGAATA-CACTGGTTTGGAAAAG 271
|||||| |||||| |||||| | | | |||||||| || | | |||| ||||||||||
Sbjct 129 TCTCGGTAAACTCATCATTTTCAAAGC-TAATGAATATG-ACAGCACTCATTTGGAAAAG 186
Query 272 AAGGTGGCTATGGA-TT--T-GGTGGATATTCCAATGGCAACGATTGGGTCATCCCATGG 327
||||| | ||||| || | | |||| | || |||| |||||| |||||||| |||||
Sbjct 187 AAGGTTCCAATGGAGTTGGTAGATGGAAAGGCC-ATGGTAACGATCGGGTCATCTCATGG 245
Query 328 CTGGGTAGCTACTTTGAAGGAAGACGGTA-TATTGCGTCTCCAAGATGATCTAAACCCGG 386
||||||||||||||||||||| || || | || ||||||||||||| |||||||||| ||
Sbjct 246 CTGGGTAGCTACTTTGAAGGACGATGG-AGTAGTGCGTCTCCAAGACGATCTAAACCTGG 304
Query 387 TTGCATCGT-ATACAGAACCAAAACGCATTCCCCTGTCTCCCCTCGTAACTCTGCCTCAT 445
||||||| | ||||||| || |||||||||| |||| |||| || |||||||||||||||
Sbjct 305 TTGCATC-TGATACAGATCCGAAACGCATTCTCCTGCCTCCTCTTGTAACTCTGCCTCAT 363
Query 446 TGCCAAACTCAAATCGTTACCAATGT-GTCATTGTCCTCATCTTCTCCTGAGGATGAGGA 504
|||||||| ||| | || ||||| || | || |||| || ||||||||||||||||| ||
Sbjct 364 TGCCAAACCCAAGTTGTCACCAACGTGGCCA-TGTCTTCTTCTTCTCCTGAGGATGAAGA 422
Query 505 ATGTGTTGTGGCTGTCAAGTTCTTGGGACCTCA-ACTCAGCTTTTGCAGACCTGCTCAAA 563
||||||||||||||||||||||| |||||||| | ||||||| || ||||| |||||||
Sbjct 423 CTGTGTTGTGGCTGTCAAGTTCTTAGGACCTCAGA-TCAGCTTATGTAGACCAGCTCAAA 481
Query 564 GTAACTCCAAGTGGATCAACATCAGAATCGCAAACCCTTGCTTCTACTCCTCTCGTGTCA 623
| |||||| ||||||||||||||||||||| |||||| || ||| ||||||| | ||| |
Sbjct 482 GAAACTCCCAGTGGATCAACATCAGAATCGAAAACCCATGTTTCCACTCCTCCCCTGTTA 541
Query 624 TGTTTTCGAAGAAAGATGAG-ATGTTTCGCATACTCGGATCTGGAGGCCATATCATTGGA 682
||||||| |||||||||| | ||||||| ||| | |||||||||||| || ||||||||
Sbjct 542 TGTTTTCCAAGAAAGATG-GCATGTTTCACATTCCCGGATCTGGAGGTCACCTCATTGGA 600
Query 683 TCATGGGATCTCCACACACACAATCAA-AAA-CC--GTTTCAAAGATTGCGGTTCAAAAA 738
|||||||||||||||| ||| || || ||| || | |||| || ||||| ||||||||
Sbjct 601 TCATGGGATCTCCACAAACATAA-GAACAAACCCAAGATTCAGAGGTTGCGATTCAAAAA 659
Query 739 CCTTCCCAAGCTGACAAAGACCA-AACAAGAGCTGATGGATTCGTGCTACAAAAGCGAAC 797
||||||| |||| || ||||||| || ||||| || ||||||| | || |||||||
Sbjct 660 CCTTCCCGAGCTCACCAAGACCAGAA-GGGAGCTTTTGAATTCGTGTTGCACGAGCGAAC 718
Query 798 ACTTGGTGGAGTCAAGAACCACCGGTGAAACATTT-TTGGTTAAGTGGTATAGGAAGGCC 856
|||||||||||||||||||||| ||| || ||| |||||||||||||||||||||| |
Sbjct 719 ACTTGGTGGAGTCAAGAACCACAAATGAGAC-TTTCTTGGTTAAGTGGTATAGGAAGGTC 777
Query 857 GTCTGGAGAGGTATG-TCGAAACTGAAAACAAAAGCTTTAATGGTATTCAAGCTAGACGA 915
| || || || | |||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 778 ACCACCAGTGGCGTGGT-GAAAATGAAAACAAGAGCTTTAATGGTCTTCAAGCTAGACGA 836
Query 916 CA-AAGGAAACGCTGTTTACACTCAAGATATTGGAGATCTCTGCATTTTCCTCTCAAAGT 974
| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 837 -AGAAGGGAACGCTGTTTACACTCAAGACATTGGAGATCTCTGCATTTTCCTCTCAAAGT 895
Query 975 CTGAACCATTTTGTGT-ACCTGTTAGCTCCTTTCCTGGTATGATGTTCCCTAACCACGTC 1033
||||||| |||||||| || || |||||||| ||| || ||| || || |||| | |||
Sbjct 896 CTGAACCTTTTTGTGTCAC-TGCTAGCTCCTATCCCGGCATG-TGCTC--TAACAAAGTC 951
Query 1034 -A-ACCTCGCGGATGTCGGTGAAAAGGGA-TATGTCAATCTGGCTGATTCTTCCATC 1087
| |||| | | |||||| ||| | | | | |||| ||||| ||||||| ||||||
Sbjct 952 CACACCTTG-G-ATGTCGACGAAGACGCACT-TGTCGATCTGTCTGATTCCTCCATC 1005
> Ahg495535 jgi|Araly1|495535|fgenesh2_kg.8__1351__AT5G54550.1
Length=1104
Score = 749 bits (405), Expect = 0.0
Identities = 719/869 (83%), Gaps = 28/869 (3%)
Strand=Plus/Plus
Query 137 CTCTCTAATGGCTTCTCAACTTCCAAATTGCAAACCCCTCCTTGTACTGTCAT-TGACGC 195
|||||||||||||||||| ||||| | |||| || ||||| ||||| |||| || |||
Sbjct 46 CTCTCTAATGGCTTCTCATCTTCCTCAGTGCAGACTCCTCCATGTACCATCATCTG-CGC 104
Query 196 TGATCCTTGTGGAAG-GGGTCTCGGCAAACTCTTCATTTACT--AT-CATAATGAATCTG 251
||||||||||| || || |||||| |||||| | | ||| | || | |||||| |
Sbjct 105 CGATCCTTGTGG-AGCGGATCTCGGGAAACTCGTGA-TTA-TGAATGC-TAATGAGGGTA 160
Query 252 AATACACTGGTTTGGAAAAGAAGGTGGCTATGGATTTGGTGGATA-T--TCCAATGGCAA 308
||| ||||| |||||||||||||||| || |||| |||||||||| | |||||||| |
Sbjct 161 AATGCACTGATTTGGAAAAGAAGGTGCCTCTGGAGTTGGTGGATAGTGATCCAATGGTGA 220
Query 309 CGATTGGGTCATCCCATGGCTGGGTAGCTACTTTGAAGGAAGACGGTATATTGCGTCTCC 368
|||| ||| | || |||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 221 CGATAGGGGCGTCTCATGGCTGGGTAGCTACTTTGAAGGACGACGGTGTAGTGCGTCTCC 280
Query 369 AAGATGATCTAAACCCGGTTGCATC-GTATACAGAA-CCAAAACGCATTCCCCTGTCTCC 426
||||||| |||||||||||||| || | || || || || ||||||||||||||| ||||
Sbjct 281 AAGATGACCTAAACCCGGTTGCTTCAG-ATTCA-AACCCTAAACGCATTCCCCTGCCTCC 338
Query 427 CCTCGTAACTCTGCCTCATTGCCAAACTCAAATCGTTACCAATGT-GTCATTGTCCTCAT 485
|| |||||| |||||| ||||||||| ||| | || ||||| || | || ||||||| |
Sbjct 339 TCTTGTAACTTTGCCTCGTTGCCAAACCCAAGTTGTGACCAACGTGGCCA-TGTCCTCGT 397
Query 486 CTTCTCCTGAGGATGAGGAATGTGTTGTGGCTGTCAAGTTCTTGGGACCTCAACTCAGCT 545
|||||||||||||||| || ||||| |||||| ||||||||||||| |||||||||||||
Sbjct 398 CTTCTCCTGAGGATGATGACTGTGTCGTGGCTATCAAGTTCTTGGGGCCTCAACTCAGCT 457
Query 546 TTTGCAGACCTGCTCAAAGTAACTCCAAGTGGATCAACATCAGAATCGCAAACCCTTGCT 605
|||| ||||| || |||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 458 TTTGTAGACCGGCACAAAGTAACTCCGAGTGGATCAACATCAGAATCGCAAACCCCGGCT 517
Query 606 TCTACTCCTCTCGTGTCATGTTTTCGAAGAAAGATGAGATGTTTCGCATACTCGGATCTG 665
||| |||||| |||||||||| ||| ||||||||||| |||||||| || | ||| ||||
Sbjct 518 TCTTCTCCTCCCGTGTCATGTATTCCAAGAAAGATGACATGTTTCGTATTCCCGGGTCTG 577
Query 666 GAGGCCATATCATTGGATCATGGGATCTCCACACACACAATCAAAAACC---GTTTCAAA 722
||||||| |||| ||||||||||||| || |||| | |||| || || | |||| |
Sbjct 578 GAGGCCACCTCATCGGATCATGGGATCCCCGCACAGAGTATCACAATCCCAAGATTCAGA 637
Query 723 GATTGCGGTTCAAAAACCTTCCCAAGCTGACAAAGACCAAACAAG-AGCTGATGGATTCG 781
| |||| ||| |||||||||| |||| | |||||||| | | |||| ||||||||
Sbjct 638 GGCTGCGATTCCGAAACCTTCCCGAGCTTCCTAAGACCAAG-AGGGAGCTTCTGGATTCG 696
Query 782 TGCTACAAAAGCGAACACTTGGTGGAGTCAAGAACCACCGGTGAAACATTTTTGGTTAAG 841
|| | || || |||||||||||||||||| || ||||||||||||| || ||||| |||
Sbjct 697 TGTTGCAGGAGTGAACACTTGGTGGAGTCACGATCCACCGGTGAAACGTTCTTGGTAAAG 756
Query 842 TGGTATAGGAAGGCCGTCTGGAGAGGTATG-TCGAAACTGAAAACAAAAGCTTTAATGGT 900
||||| | ||||||| | | || || | | ||| |||||||||||||| |||||||
Sbjct 757 TGGTACAAGAAGGCCACCACCAAAGATACGGTAAAAA-TGAAAACAAAAGCTATAATGGT 815
Query 901 ATTCAAGCTAGACGACAAAGGAAACGCTGTTTACACTCAAGATATTGGAGATCTCTGCAT 960
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 816 GTTCAAGCTAGACGAAAAAGGAAACGCTGTTTACACTAAAGACATTGGAGATCTTTGCAT 875
Query 961 TTTCCTCTCAAAGTCTGAACCATTT-TGT 988
||| ||||||||||||||||| ||| |||
Sbjct 876 TTTTCTCTCAAAGTCTGAACC-TTTCTGT 903
> Ahg497341 jgi|Araly1|497341|fgenesh2_kg.236__1__AT5G55880.1
Length=1071
Score = 665 bits (360), Expect = 0.0
Identities = 567/664 (85%), Gaps = 26/664 (4%)
Strand=Plus/Plus
Query 497 GATGAGGAA-TGTGTTGTGGCTGTCAAGTTCTTGGGACCTCAACTCAGCTTTTGCAGACC 555
||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 412 GATGA-GAACTGTGTTGTGGCTGTCAAGTTCTTGGGACCTCAAATCAGCTTTTGCAGACC 470
Query 556 TGCTCAAAGTAACTCCAAGTGGATCAACATCAGAATCGCAAACCCTTGCTTCTACTCCTC 615
|||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct 471 CGCTCAACGTAACTCTGAGTGGATCAATGTCAGAATCGCAAACCCTTGTTTCTACTCCTC 530
Query 616 TCGTGTCATGTTTTCGAAGAAAGATGAGATGTTTCGCATACTCGGATCTGGAGGCCATAT 675
|||||||||||||||| ||||| |||| |||||| |||| | |||||||||||||||| |
Sbjct 531 TCGTGTCATGTTTTCGGAGAAACATGACATGTTTTGCATCCCCGGATCTGGAGGCCATCT 590
Query 676 CATTGGATCATGGGATCTCCACACACACAA--TCAAAAA--CC--GTTTCAAAGATTGCG 729
||||| ||||||||| ||||||||| |||| |||||| || |||||| || ||| |
Sbjct 591 CATTGCATCATGGGACCTCCACACAGACAAGCACAAAAATCCCAAGTTTCAGAGGTTGAG 650
Query 730 GTTCAAAAACCTTCCCAAGCTGACAAAGACCAAACAAGAGCTGATGGATTCGTGCTACAA 789
|||| ||||| |||| ||||||||||||||||||| |||| | |||||||||||||||||
Sbjct 651 GTTCCAAAACATTCCAAAGCTGACAAAGACCAAACGAGAGATTATGGATTCGTGCTACAA 710
Query 790 AAGCGAACACTTGGTGGAGTCAAGAACCACCGGTGAAACATTT-TTGGTTAAGTGGTATA 848
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
Sbjct 711 AAGCGAACACTTGGTGGAGTCAAGAACCACCGGTGAAAC-TTTCTTGGTTAAGTGGTACA 769
Query 849 GGAAGGCCGTCTGGAGAGGTATGTCGAAACTGAAAACAAAAGCTTTAATGGTATTCAAGC 908
||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||
Sbjct 770 GGAAGGCCGTCTGGAGAGGTATGTCGAAATTGAGCACAAAAGCTTTAATGGTGTTCAGGC 829
Query 909 TAGACGACAAAGGAAACGCTGTTTACACTCAAGATATTGGAGATCTCTGCATTTTCCTCT 968
| |||||| ||||||| ||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 830 TGGACGACGAAGGAAATGCTGTGTACACTAAAGACATTGGAGATCTCTGCATTTTCCTCT 889
Query 969 CAAAGTCTGAACCATTTTGTGTAC-CTGTTAGCTCCTTTCCTGGTATGATGTTCCCTAAC 1027
|||| |||||||| |||||||| | || |||||||||| || || ||| | |||||||||
Sbjct 890 CAAAATCTGAACCTTTTTGTGT-CTCTCTTAGCTCCTTACCAGGCATGTTTTTCCCTAAC 948
Query 1028 CACGTC-AACCTCGCGGATGTCGGT-GAAAAGGGATATG-TCAATCTGGCTGATTCTTCC 1084
| || || | ||||| ||| ||| |||||| | | |||||| ||||||||
Sbjct 949 AATGTTGAATA-CATGGATG-CGGACGAAGCCGGATATTATGA-TCTGGCAGATTCTTCT 1005
Query 1085 ATC-TCTGCTCG-TAATACTAGAATCGGG-CCAGGT-TACCATATTCCACCTCAAATTAT 1140
||| | || | | | |||| ||| ||| || ||| | | ||||||||||||||| |||
Sbjct 1006 ATCGT-TGGT-GATCTTACTCTAATGGGGACC-GGTGT-CTATATTCCACCTCAAAATAT 1061
Query 1141 AGAC 1144
||||
Sbjct 1062 AGAC 1065
> Ahg495357 jgi|Araly1|495357|fgenesh2_kg.8__1173__AT5G52930.1
Length=1340
Score = 593 bits (321), Expect = 8e-169
Identities = 557/668 (83%), Gaps = 28/668 (4%)
Strand=Plus/Plus
Query 374 GATCTAAACCCGGTTGCATCGT-ATACAGAACCAAAACGCATTCCCCTGTCTCCCCTCGT 432
||| ||||||||| |||||| | | ||| || ||||||||||||||| |||| || ||
Sbjct 232 GATTTAAACCCGGCTGCATC-TGGTTTAGATCCGAAACGCATTCCCCTGCCTCCTCTTGT 290
Query 433 AACTCTGCCTCATTGCCAAACTCAAATCGTTACCAATGT-GTCATTGTCCTCATCTTCTC 491
|||||||||||||||||||| ||| | || ||||| || | || |||||||||||||||
Sbjct 291 GACTCTGCCTCATTGCCAAACCCAAGTTGTCACCAACGTGGCCA-TGTCCTCATCTTCTC 349
Query 492 CTGAGGATGAGGAATGTGTTGTGGCTGTCAAGTTCTTGGGACCTCA-ACTCAGCTTTTGC 550
|||||||| | |||||||||||||||||||||||||| |||||||| | ||||||| ||
Sbjct 350 CTGAGGATAAAGAATGTGTTGTGGCTGTCAAGTTCTTAGGACCTCAGA-TCAGCTTATGT 408
Query 551 AGACCTGCTCAAAGTAACTCCAAGTGGATCAACATCAGAATCGCAAACCCTTGCTTCTAC 610
||||| |||||||| |||||| ||||||||||||||||||||| |||||| || ||| ||
Sbjct 409 AGACCAGCTCAAAGAAACTCCCAGTGGATCAACATCAGAATCGAAAACCCATGTTTCCAC 468
Query 611 TCCTCTCGTGTCATGTTTTCGAAGAAAGATGAG-ATGTTTCGCATACTCGGATCTGGAGG 669
||||| | ||| |||||||| |||||||||| | ||||||| ||| | ||||||||||||
Sbjct 469 TCCTCCCCTGTTATGTTTTCCAAGAAAGATG-GCATGTTTCACATTCCCGGATCTGGAGG 527
Query 670 CCATATCATTGGATCATGGGATCTCCACACACACAATCA-AAAACC-GT-TTCAAAGATT 726
|| |||||||||||||||||||||||| |||||| || || || | |||| || |
Sbjct 528 TCACCTCATTGGATCATGGGATCTCCACAAACACAAGCACAATCCCAATATTCAGAGGCT 587
Query 727 GCGGTTCAAAAACCTTCCCAAGCTGACAAAGACCAAACA-AGAGCTGATGGATTCGTGCT 785
||| ||||| ||||||||| |||| || ||||||||| | ||||| || ||||||| |
Sbjct 588 GCGATTCAAGAACCTTCCCGAGCTCACCAAGACCAAA-AGGGAGCTTTTGCATTCGTGTT 646
Query 786 ACAAAAGCGAACACTTGGTGGAGTCAAGAACCACCGG-TGAAACATTT-TTGGTTAAGTG 843
|| |||| |||||||||||||||||||||| | ||| ||| || ||| || || |||||
Sbjct 647 GCACAAGCCAACACTTGGTGGAGTCAAGAACTA-CGGATGAGAC-TTTCTTTGTCAAGTG 704
Query 844 GTATAGGAAGGCCGTC-TGGAGAGGTAT-GTCGAAACTGAAAACAAAAGCTTTAATGGTA 901
|| ||||||||| | | || || | || |||| |||||||||||||| |||||||
Sbjct 705 TTACAGGAAGGCC-ACATCCAGTGGCGTGGT-GAAAATGAAAACAAAAGCTGTAATGGTC 762
Query 902 TTCAAGCTAGACGACA-AAGGAAACGCTGTTTACACTCAAGATATTGGAGATCTCTGCAT 960
|||||||||||||| | ||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 763 TTCAAGCTAGACGA-AGAAGGAAACGCTGTTTACACTCAAGACATCGGACATCTCTGCAT 821
Query 961 TTTCCTCTCAAAGTCTGAACCATTTTGTGTACCTGTTAGCTCC-TTTCCTGGTATGATGT 1019
||||||||||||||||||||| |||||||| |||| || |||| |||| ||| ||| ||
Sbjct 822 TTTCCTCTCAAAGTCTGAACCGTTTTGTGTCCCTGCTAACTCCATTTC-TGGCATG-TG- 878
Query 1020 TCCCTAAC 1027
|||||||
Sbjct 879 -CCCTAAC 885
> Ahg495669 jgi|Araly1|495669|fgenesh2_kg.8__1485__AT5G55890.1
Length=1017
Score = 573 bits (310), Expect = 1e-162
Identities = 513/608 (84%), Gaps = 26/608 (4%)
Strand=Plus/Plus
Query 553 ACCTGCTCAAAGTAACTCCAAGTGGATCAACATCAGAATCGCAAACCCTTGCTTCTACTC 612
||| |||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||
Sbjct 414 ACCGGCTCAACGTAACTCTGAGTGGATCAATGTCAGAATCGCAAACCCTTGTTTCTACTC 473
Query 613 CTCTCGTGTCATGTTTTCGAAGAAAGATGAGATGTTTCGCATACTCGGATCTGGAGGCCA 672
||||||||||||||||||| ||||| |||| |||||| |||| | |||||||||||||||
Sbjct 474 CTCTCGTGTCATGTTTTCGGAGAAACATGACATGTTTTGCATCCCCGGATCTGGAGGCCA 533
Query 673 TATCATTGGATCATGGGATCTCCACACACACAA--TCAAAAA--CC--GTTTCAAAGATT 726
| |||||| ||||||||| ||||||||| |||| |||||| || |||||| || ||
Sbjct 534 TCTCATTGCATCATGGGACCTCCACACAGACAAGCACAAAAATCCCAAGTTTCAGAGGTT 593
Query 727 GCGGTTCAAAAACCTTCCCAAGCTGACAAAGACCAAACAAGAGCTGATGGATTCGTGCTA 786
| ||||| ||||| |||| ||||||||||||||||||| |||| | ||||||||||||||
Sbjct 594 GAGGTTCCAAAACATTCCAAAGCTGACAAAGACCAAACGAGAGATTATGGATTCGTGCTA 653
Query 787 CAAAAGCGAACACTTGGTGGAGTCAAGAACCACCGGTGAAACATTT-TTGGTTAAGTGGT 845
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 654 CAAAAGCGAACACTTGGTGGAGTCAAGAACCACCGGTGAAAC-TTTCTTGGTTAAGTGGT 712
Query 846 ATAGGAAGGCCGTCTGGAGAGGTATGTCGAAACTGAAAACAAAAGCTTTAATGGTATTCA 905
| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct 713 ACAGGAAGGCCGTCTGGAGAGGTATGTCGAAATTGAGCACAAAAGCTTTAATGGTGTTCA 772
Query 906 AGCTAGACGACAAAGGAAACGCTGTTTACACTCA-AGATATTGGAGATCTCTGCATTTTC 964
||| |||||| ||||||| |||||||||||| | ||| ||||||||||| |||||||||
Sbjct 773 GGCTGGACGACGAAGGAAATGCTGTTTACACT-ATAGACATTGGAGATCTATGCATTTTC 831
Query 965 CTCTCAAAGTCTGAACCATTTTGTGTAC-CTGTTAGCTCCTTTCCTGGTATGATGTTCCC 1023
|||||||| |||||||| |||||||| | || |||||||||| || || ||| | |||||
Sbjct 832 CTCTCAAAATCTGAACCTTTTTGTGT-CTCTCTTAGCTCCTTACCAGGCATGTTTTTCCC 890
Query 1024 TAACCACGTC-AACCTCGCGGATGTCGGT-GAAAAGGGATATG-TCAATCTGGCTGATTC 1080
|||| | || || | ||||| ||| ||| |||||| | | |||||| |||||
Sbjct 891 TAACAATGTTGAATA-CATGGATG-CGGACGAAGCCGGATATTATGA-TCTGGCAGATTC 947
Query 1081 TTCCATC-TCTGCTCG-TAATACTAGAATCGGG-CCAGGT-TACCATATTCCACCTCAAA 1136
||| ||| | || | | | |||| ||| ||| || ||| | | |||||||||||||||
Sbjct 948 TTCTATCGT-TGGT-GATCTTACTCTAATGGGGACC-GGTGT-CTATATTCCACCTCAAA 1003
Query 1137 TTATAGAC 1144
|||||||
Sbjct 1004 ATATAGAC 1011
> Ahg493544 jgi|Araly1|493544|fgenesh2_kg.7__2977__AT4G13680.1
Length=1242
Score = 514 bits (278), Expect = 6e-145
Identities = 595/739 (81%), Gaps = 57/739 (8%)
Strand=Plus/Plus
Query 301 AATGGCAACGATTGGGTCATCCCATGGCTGGGTAGCTACTTTGAAGGAAGACGGTATATT 360
||||| |||||| || |||||| |||| ||| ||||||||||||| | ||||| | ||
Sbjct 271 AATGGGAACGATAGGATCATCCAATGGATGGCTAGCTACTTTGAA-G--GACGGCGTGTT 327
Query 361 GCGTCTCC-A-AGATG-ATCTAAACCCGGTTGCATCGTATACAGAACCAAAACGCATTCC 417
|||||||| | | ||| ||||||| | | || | | || || || |||||||||
Sbjct 328 GCGTCTCCGAGAAATGAATCTAAA--C---T--AT-G-AAACGGATCCGAAACGCATTTT 378
Query 418 CCTGTCTCCCCTCGTAACTCTGCCTCATTGCCAAACTCAA-ATCGTTACCAATGT-GTCA 475
||| |||| || ||||||||||||||||||||||| ||| || || ||||| || | ||
Sbjct 379 GCTGCCTCCTCTTGTAACTCTGCCTCATTGCCAAACACAATAT-GTCACCAACGTGGCCA 437
Query 476 TTGTCCT-CATCTTCTCCTGAGGATGAGGAATGTGTTGTGGCTGTCAAGTTCTTGGGACC 534
||| || | ||||| ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 438 -TGT-CTACGTCTTCCCCTGAAGAAGAGGACTGTGTTGTGGCTGTCAAGTTCTTGGGACC 495
Query 535 TCAACTCAGCTTTTGCAGACCTGCTCAAAGTAACTCCAAGTGGATCAACATCAGAATCG- 593
||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||| |
Sbjct 496 TCAACTCAGCTTTTGCAGACCCGCTCAAAGCAACTCCGAGTGGATCAACTTCAGAAT-GA 554
Query 594 CAAACCCTTGCTTCTACTCCTCTCGTGTCATGTTTTCGAAGAAAGATGAGATGTTTCGCA 653
|| |||| ||||||| |||||| | |||||||||||| ||||||||||| ||||||||||
Sbjct 555 CAGACCCCTGCTTCTTCTCCTCCCCTGTCATGTTTTCCAAGAAAGATGACATGTTTCGCA 614
Query 654 TA-CTCGGATCTGGAGGCCATATCATTGGATCATGGGATCTCCACACACACA-ATCAAAA 711
|| | ||| ||||||||||| |||| ||||||||||||||||| | || || | ||| |
Sbjct 615 TAGC-CGGCTCTGGAGGCCACCTCATCGGATCATGGGATCTCCAAA-AC-CATAGCAACA 671
Query 712 ACC----GTTTCAAAGATTGCGGTT-CAAAAACCTTCCCAAGCTGACAAAGACCAAACAA 766
||| ||| || | |||||||| ||||| ||||||||||||| | |||| |||| |
Sbjct 672 ACCCCAAGTTGCAGATCTTGCGGTTTCAAAA-CCTTCCCAAGCTGTCTGAGACAAAACGA 730
Query 767 GAGCTGATGGATTCGTGCTACAAAAGCGAACACTTGGTGGAGTCAAGAACCACCGGTGAA 826
|| || ||||||||||||||| ||||||||||||||||||||||| ||||||| |||||
Sbjct 731 GACCTTCTGGATTCGTGCTACACAAGCGAACACTTGGTGGAGTCAATAACCACCAGTGAA 790
Query 827 ACATTT--TTGGTTAAGTGGTATAGGAAGGCCGTCTG-GA--G--A--GGTATGTCG-A- 875
|| ||| ||| |||||| ||| |||||| | | | | || | | ||||| || |
Sbjct 791 AC-TTTCATTG-TTAAGTTGTACAGGAAGACAG-CAGAGATCGTCAAAGGTAT-TCCTAG 846
Query 876 AACTGAAAACAAAAGCTTTAATGGTATTCAAGCTAGACGACA-AAGGAAACGCTGTTTAC 934
|| |||||||| |||| ||||||| |||| |||||| || | |||||||||||||||||
Sbjct 847 AA-TGAAAACAGAAGCAATAATGGTGTTCAGGCTAGATGA-AGAAGGAAACGCTGTTTAC 904
Query 935 ACTCAAGATATTGGAGATCTCTGCATTTTCCTCTCAAAGTCTGAACCATTT-TGTGTACC 993
|||||||| || ||||||| ||||| |||| |||| |||||| | ||| ||||| ||
Sbjct 905 ACTCAAGACATCGGAGATCAAAGCATTCACCTCACAAATTCTGAAGC-TTTCTGTGTCCC 963
Query 994 TGTT-AGCTCCTTTC-CTG 1010
| | ||||||| || |||
Sbjct 964 T-TCGAGCTCCTCTCTCTG 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5