BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55280.1
Length=1512
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950184 jgi|Araly1|950184|scaffold_802071.1 2314 0.0
> Ahg950184 jgi|Araly1|950184|scaffold_802071.1
Length=1400
Score = 2314 bits (1253), Expect = 0.0
Identities = 1352/1401 (97%), Gaps = 2/1401 (0%)
Strand=Plus/Plus
Query 103 GAAAGCAGAGGAAGTAAACAATGGCGATAATTCCGTTAGCACAGCTTAATGAGCTAACGA 162
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1 GAAAGCAGAGGAAGTAAACAATGGCGATAATTCCGTTAGCGCAGCTCAATGAGCTAACGA 60
Query 163 TTTCTTCATCTTCTTCTTCGTTTCTTACCAAATCGATATCTTCTCATTCGTTGCATAGTA 222
|||||||||| |||||| | |||||| | |||||| ||| ||||||||||||||||||||
Sbjct 61 TTTCTTCATCGTCTTCTACATTTCTTGCGAAATCGTTATGTTCTCATTCGTTGCATAGTA 120
Query 223 GCTGCATTTGCGCAAGTTCTAGAATCAGTCAATTCCGTGGCGGCTTCTCTAAACGAAGAA 282
|||| | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GCTGTGTGTGCGCAAGTACTAGAATCAGTCAATTCCGTGGCGGCTTCTCAAAACGAAGAA 180
Query 283 GCGATTCAACAAGGTCTAAGTCGATGCGATTGAGGTGTTCCTTCTCTCCGATGGAATCTG 342
||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||
Sbjct 181 GCGATTCCACAAGGTCTAAATCGATGCGGTTGAGATGTTCCTTCTCTCCGATGGAGTCTG 240
Query 343 CGAGAATTAAGG-TGATTGGTGTCGGTGGTGGTGGTAACAATGCCGTTAACCGGATGATT 401
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGAATTAAGGTTG-TTGGTGTCGGTGGTGGTGGTAACAATGCCGTTAACCGGATGATT 299
Query 402 TCAAGCGGTTTACAGAGTGTTGATTTCTATGCGATAAACACGGATTCGCAAGCTCTGTTA 461
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 300 TCAAGCGGTTTACAGAGTGTTGATTTCTATGCGATAAACACGGACTCTCAAGCTCTGTTA 359
Query 462 CAGTCTTCTGCTGAGAACCCACTTCAAATTGGAGAACTTTTAACTCGTGGGCTTGGCACT 521
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 360 CAATCTTCTGCTGAGAACCCACTTCAAATTGGAGAGCTTTTAACTCGTGGGCTTGGTACT 419
Query 522 GGTGGAAACCCGCTTCTTGGAGAACAAGCTGCAGAAGAATCAAAAGATGCAATTGCTAAT 581
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGGAAACCCGCTTCTCGGTGAACAAGCTGCAGAAGAATCAAAAGATGCAATTGCTAAT 479
Query 582 GCTCTTAAAGGATCAGACCTTGTTTTCATAACTGCTGGTATGGGTGGTGGAACAGGGTCT 641
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GCTCTTAAAGGATCAGACCTTGTTTTCATTACTGCTGGTATGGGTGGTGGAACAGGGTCT 539
Query 642 GGTGCTGCACCTGTGGTAGCTCAGATTTCGAAGGATGCTGGTTATTTGACTGTTGGTGTT 701
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 GGTGCTGCACCTGTGGTAGCTCAGATTTCGAAGGATGCTGGTTACTTGACTGTTGGTGTT 599
Query 702 GTTACCTATCCGTTTAGCTTTGAAGGACGTAAAAGATCTTTGCAGGCACTGGAAGCTATT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTTACCTATCCGTTTAGCTTTGAAGGACGTAAAAGATCTTTGCAGGCACTGGAAGCTATT 659
Query 762 GAAAAGCTCCAAAAGAATGTTGATACCCTTATCGTGATTCCAAATGATCGTCTGCTAGAT 821
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 GAAAAGCTCCAAAAGAATGTTGATACCCTTATTGTGATTCCAAATGATCGTCTGCTAGAT 719
Query 822 ATTGCTGATGAACAGACGCCACTTCAGGACGCGTTTCTTCTTGCAGATGATGTTTTACGC 881
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 720 ATTGCTGATGAACAGACGCCGCTTCAGGATGCTTTTCTTCTTGCAGATGATGTTTTACGC 779
Query 882 CAAGGAGTACAAGGAATCTCAGATATTATTACTATACCTGGACTAGTCAATGTAGATTTT 941
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 780 CAAGGAGTACAAGGAATCTCAGATATTATTACTATACCTGGACTGGTCAATGTAGATTTT 839
Query 942 GCAGATGTGAAGGCAGTCATGAAAGATTCTGGAACTGCAATGCTCGGGGTAGGTGTTTCT 1001
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCAGATGTGAAGGCAGTAATGAAAGATTCTGGAACTGCAATGCTCGGGGTAGGTGTTTCT 899
Query 1002 TCCAGCAAAAACCGGGCAGAAGAAGCAGCTGAACAAGCAACTTTGGCTCCATTGATCGGA 1061
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 TCCAGCAAGAACCGGGCAGAAGAAGCAGCTGAACAAGCGACTTTGGCTCCATTGATCGGA 959
Query 1062 TCATCCATACAATCAGCTACTGGTGTCGTCTACAACATCACTGGTGGAAAAGACATAACT 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TCATCCATACAATCAGCTACTGGTGTCGTCTACAACATCACTGGTGGAAAAGACATAACT 1019
Query 1122 TTGCAGGAAGTGAACCGAGTATCACAGGTCGTGACAAGTTTGGCAGACCCATCGGCCAAC 1181
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1020 TTGCAGGAAGTAAACCGAGTATCGCAGGTTGTGACAAGTTTGGCAGACCCATCAGCCAAC 1079
Query 1182 ATCATATTTGGAGCTGTTGTGGATGATCGCTACACCGGAGAGATTCATGTAACGATAATC 1241
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1080 ATCATATTTGGAGCTGTTGTGGATGATCGTTACACCGGAGAGATTCATGTAACGATAATC 1139
Query 1242 GCCACAGGCTTCTCTCAGTCATTCCAGAAGACACTTCTGACTGATCCAAGAGCAGCTAAA 1301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCCACAGGCTTCTCACAGTCATTCCAGAAGACACTTCTGACTGATCCAAGAGCAGCTAAA 1199
Query 1302 CTCCTTGACAAAATGGGATCATCAGGTCAACAAGAGAACAAAGGAATGTCTCTGCCTCAC 1361
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTCCTGGACAAAATGGGATCATCAGGTCAACAAGAGAACAAAGGAATGTCTCTGCCTCAC 1259
Query 1362 CAGAAGCAGTCTCCATCAACTATCTCTACCAAATCGTCTTCTCCCCGTAGActtttcttc 1421
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1260 CAGAAGCAGTCTCCATCAACTATCTCTACCAAATCATCTTCTCCCCGTAGACTTTTCTTC 1319
Query 1422 tagttttctttttttccttttcggtttcAAGCATCAAAAATGTAACGATCTTCAGGCTCA 1481
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1320 TAGTTTTCTTTTTTGCCTTTTCGGTTTTAAGCATCAAAAATGTAACGATCTTCAGGCTCA 1379
Query 1482 AATATCAATTACATTTGATTT 1502
|||||||||||||||| ||||
Sbjct 1380 AATATCAATTACATTTTATTT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56602104070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5