BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G55290.1

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950185 jgi|Araly1|950185|scaffold_802072.1                        403    6e-112
  Ahg945390 jgi|Araly1|945390|scaffold_701619.1                        237    6e-62 


> Ahg950185 jgi|Araly1|950185|scaffold_802072.1
Length=256

 Score =  403 bits (218),  Expect = 6e-112
 Identities = 245/257 (95%), Gaps = 6/257 (2%)
 Strand=Plus/Plus

Query  160  TCTCTCACAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCG  219
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TCTCTCTCAGATCAGGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTCGTCG  60

Query  220  TTGGGATAATTGCT-TCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAAT  278
            ||||||| ||||||  || |||||| ||||||||||||||||||||| ||||||||||||
Sbjct  61   TTGGGATTATTGCTGCCT-TATGCGCTAGAATCTGCTGCAACAGAGGTCCCTCCACGAAT  119

Query  279  CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT  338
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CTGCTACATCTTACCTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATT  179

Query  339  GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATTCTAAGCGAAACAGAGTAGA-T  397
            |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct  180  GTATATATTGCACAGATGAATCCTCTGATTGTCCCCATCCTAAGCGAAACAGAGTAGAAT  239

Query  398  --TC-CTCTACTCAGAC  411
              || ||||||||||||
Sbjct  240  CCTCTCTCTACTCAGAC  256


> Ahg945390 jgi|Araly1|945390|scaffold_701619.1
Length=408

 Score =  237 bits (128),  Expect = 6e-62
 Identities = 208/247 (84%), Gaps = 4/247 (2%)
 Strand=Plus/Plus

Query  174  GGATCAAACATGGGTTTCCTTATAACAACCCTAATCTTCGTC-GTCGTTGGGATAATTGC  232
            |||||| |||||| ||| ||| ||||| ||||||| |||| | ||||| || || |||||
Sbjct  12   GGATCAGACATGGCTTTTCTTGTAACATCCCTAATATTCG-CTGTCGTCGGCATCATTGC  70

Query  233  TTCTCTATGCGTTAGAATCTGCTGCAACAGAGGCCCCTCCACGAATCTGCTACATCTTAC  292
            |||  | |||  ||||||||||| ||||| |||||||||||| |||||| ||||||||||
Sbjct  71   TTCAATCTGCACTAGAATCTGCTTCAACAAAGGCCCCTCCACCAATCTGTTACATCTTAC  130

Query  293  CTTGGTCATTACTGCGACGGTCTGCTGTTGGATGATGTGGGCAATTGTATATATTGCACA  352
            ||||||||| || || || |||||||||||||||||||||||||||||||| ||||| ||
Sbjct  131  CTTGGTCATCACCGCAACTGTCTGCTGTTGGATGATGTGGGCAATTGTATACATTGCGCA  190

Query  353  GATGAATCCTCTGATTGTCCCCATTCTAAGCGAAACAGAGTAGATTCC--TCTACTCAGA  410
            |||||| ||||| |||||||| || ||||||||   ||||||||  |   |||||||| |
Sbjct  191  GATGAAGCCTCTCATTGTCCCTATCCTAAGCGAGGTAGAGTAGAAACTAATCTACTCAAA  250

Query  411  CAAGAAC  417
            |||||||
Sbjct  251  CAAGAAC  257



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19879061869


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5