BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55300.2
Length=3077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495615 jgi|Araly1|495615|fgenesh2_kg.8__1431__AT5G55300.1 4268 0.0
Ahg329014 jgi|Araly1|329014|fgenesh1_pm.C_scaffold_7001241 1773 0.0
Ahg950187 jgi|Araly1|950187|scaffold_802074.1 1247 0.0
> Ahg495615 jgi|Araly1|495615|fgenesh2_kg.8__1431__AT5G55300.1
Length=3036
Score = 4268 bits (2311), Expect = 0.0
Identities = 2640/2795 (94%), Gaps = 38/2795 (1%)
Strand=Plus/Plus
Query 111 AGAAGTTGGTCTGAGCCTTCATCAACGTTGTTCTTTCGGGAATGGGCACTGAAACAGTTT 170
||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||
Sbjct 1 AGAAGTTGGTCTGAGCCTTTATCATCGTTGTTCTTTCGGGTATGGGCACTGAAACTGTTT 60
Query 171 CAAAACCTGTGATGGATAATGGGTCTGGAGACAGTGATGATGACAAGCCTTTAGCGTTCA 230
| |||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||
Sbjct 61 CGAAACCTGTGATGGATAATGGGTGTGAAGACAGTGATGATGACAAGCCTGTAGTGTTCA 120
Query 231 AGAGGAATAA-TACAGTGGCTTCTAATTCGAATCAATCTAAATCCAATTCCCAGAGAAGC 289
||||| | || ||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 AGAGG-AGAAGTACTGTTGCTTCTAATTCGAATCAATCTAAATCCAATCCCCAGAGAAGC 179
Query 290 AAGGCAGTTCCTACCACCAAGGTATCACCTATGAGATCACCTGTGACTAGCCCAAATGGA 349
|||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 180 AAGGCAGTCCCTACCACAAAGGAATCACCTATGAGATCCCCTGTGACTAGCCCAAATGGA 239
Query 350 ACCACTCCTTCGAATAAAACTTCTATAGTGAAATCCTCTATGCCATCATCTTCTTCTAAG 409
|||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||
Sbjct 240 ACCACTCCTTCGAATAGAACTTCTACAGTGAAATCCTCTGTGCCATCATCTTCTGCTAAG 299
Query 410 GCTTCACCAGCAAAGTCACCATTGCGGAATGATATGCCCTCTACTGTTAAGGATAGGAGC 469
|||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 300 GCTTCACCAGCAAAGTCACCATTGCGGAATGATACGCTCTCTACCGTTAAGGATAGGAGC 359
Query 470 CAGTTACAGAAAGATCAGTCTGAATGTAAAATTGAGCATGAGGATTCTGAGGATGATAGA 529
|||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 360 CAGTTACATAAAGATCAGTCTAAATGTAAAATTGAACATGAGGATTCTGAGGATGATAGA 419
Query 530 CCTTTAAGTTCC--A-TA-CT----A-T-C--T-GG--AAATAAAGGGCCAACCTCTTCG 574
|| ||||||||| | || || | | | | || ||||||||||||||||||||||
Sbjct 420 CCATTAAGTTCCATACTATCTGGAAATTCCAATCGGCAAAATAAAGGGCCAACCTCTTCG 479
Query 575 CGGCAGGTTTCTTCACCGCAGCCAGAGAAAAAGAATAATGGTGATCGACCTCTTGATAGA 634
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 CGGCAGGTGTCTTCACCGCAGCCAGAAAAAAAGAATAATGGTGATCGACCTCTTGATAGA 539
Query 635 GCAAGCAGAATTATAAAAGACGAGTCAGATGATGAAACTCCAATCTCGTCAATGTTTCGG 694
|||| | |||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 540 GCAAACCGAATCATAAAAGATGAGTCAGATGATGAAACTCCAATCTCGTTAATGTTTCGG 599
Query 695 AAGAAGATTGATAGTGGGATGTCAGGGGGCAACCAGCTCTCCAATGATGAAAAGAAACCT 754
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 600 AAAAAGATTGATAGTGGGATGTCAGGGGGCAAACAGATCTCCAATGATGAAAATAAACCT 659
Query 755 TTGGTTCAAAAGTTGCATCAGAATGGTTCCACAGTTAAGAATGAAGTGCCGAA-TGGTAA 813
|||| | ||||||||||||||||||||||| || |||| |||||||| ||||| | ||||
Sbjct 660 TTGGCTAAAAAGTTGCATCAGAATGGTTCCGCACTTAAAAATGAAGTACCGAACT-GTAA 718
Query 814 GGTATTAGGTAAGAGACCTC-TGGAGAAGAATAGTTCTGCAGATCAATCTTCCTTGAAGA 872
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTATTAGGTAAGAGACC-CGTGGAGAAGAATAGTTCTGCAGATCAATCTTCCTTGAAGA 777
Query 873 AGGCCAAAATATCAGCTTCACCTACTTCAGTGAAAATGAAACAAGATTCTGTCAAGAAAG 932
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 AGGTCAAGCTATCAGCTTCACCTACTTCAGTGAAAATGAAACAAGATTCTGTCAAAAAAG 837
Query 933 AGAT-AGATGATAAGGGAAGGGTTTTGGTTTCACCAAAA--A-TGAAAGCTAAACAGTTA 988
|| | ||||||||||||||||||||||| ||| |||||| | ||||||||||| |||||
Sbjct 838 AG-TCAGATGATAAGGGAAGGGTTTTGGGTTCCCCAAAACCATTGAAAGCTAAAAAGTTA 896
Query 989 TCTACCAGAGAAGATGGAACtgatgatgatgatgatgatgatgTTCCGATATCCAAGAGA 1048
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 897 TCTACCAGAGAAGATGGAAC------TGATGATGATGATGATGTTCCGATATCCAAGAGA 950
Query 1049 TTCAAATCAGATTCCTCCAACAGTAACACATCATCTGCAAAGCCAAAAGCAGTAAAACTA 1108
|||||||||||||||||||||||||| |||||||||||||| || || |||||||||| |
Sbjct 951 TTCAAATCAGATTCCTCCAACAGTAAAACATCATCTGCAAAACCTAAGGCAGTAAAACAA 1010
Query 1109 AATTCTACTTCATCAGCTGCAAAGCCAAAAGCGAGAAATGTCGTTTCTCCTAGGTCCAGA 1168
|| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 1011 AACTCTACTTCATCAGCTGCAAAGCCAAAAGTGACAAATGTCGTTTCTCCTCGGTCCAGA 1070
Query 1169 GCAATGACCAAAAACACTAAGAAAGTAACGAAGGACTCAAAATATTCCACGTCTTCAAAA 1228
||| || ||||||| ||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 1071 ACAACGAACAAAAACTCTAAGAAAGTAACAAAGGACTCAAAATATTCCGCGTCTTCGAAA 1130
Query 1229 TCATCACCTTCCTCTGGAGATGGGCAAAAGAAATGGACTACTTTGGTGCACAACGGTGTA 1288
|| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1131 TCGTCACCTTCATCTGGAGATGGGCAGAAGAAATGGACTACCTTGGTGCACAACGGTGTA 1190
Query 1289 ATATTTCCACCGCCATACAAGCCTCATGGCATTAAGATTTTGTACAAGGGGAAACCTGTT 1348
||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1191 ATATTTCCACCACCTTACAAGCCTCACGGCATTAAGATTTTGTACAAGGGGAAGCCTGTT 1250
Query 1349 GACCTAACTATTGAACAAGAAGAGGTTGCGACTATGTTTGCAGTGATGAGAGAGACAGAT 1408
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1251 GACCTAACTACTGAACAAGAAGAGGTTGCGACTATGTTTGCAGTAATGAGAGAGACGGAT 1310
Query 1409 TATTATACTAAACCTCAATTTCGGGAGAATTTCTGGAATGACTGGCGAAG-ACTGCTTGG 1467
||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 1311 TATTATAATAAACCTCAATTTAGGGAGAATTTCTGGAATGACTGGCG-AGCACTGCTTGG 1369
Query 1468 CAAGAAACATGTGATACAGAAGTTGGATGATTGTGACTTTACTCCCATATATGAGTGGCA 1527
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 CAGGAAACATGTGATACAGAAGTTGGATGATTGTGACTTTACTCCCATATATGAGTGGCA 1429
Query 1528 TTTGgaagagaaagagaagaagaaacaaatgagcacagaggagaaaaaagctttgaaaga 1587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1430 TTTGGAAGAGAAAGAGAAGAAGAAACAAATGAGCACAGAGGAGAAAAAAGCTTTGAAAGA 1489
Query 1588 ggagaaaatgaagcaagaGGAGAAATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAA 1647
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 GGAGAAACTGAAGCAAGAGGAGAAATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAA 1549
Query 1648 GATTGGTAATTTCAGAGTGGAACCGCCTGGCCTTTTCAGAGGCCGTGGAGAACATCCCAA 1707
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1550 GATTGGTAATTTCAGAGTTGAACCGCCTGGGCTTTTCAGAGGCCGTGGAGAACATCCCAA 1609
Query 1708 GATGGGAAAACTAAAGAAGCGTATCCATCCATGCGAGATCACCTTAAATATCGGGAAAGG 1767
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1610 GATGGGAAAACTAAAGAAGCGTATCCGTCCATGCGAGATCACCTTAAATATCGGGAAAGG 1669
Query 1768 TGCTCCTATTCCAGAATGTCCAATTGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAA 1827
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1670 TGCTCCTATTCCAGAATGTCCAATCGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAA 1729
Query 1828 CACAGTCACCTGGCTAGCTTTCTGGGCTGATCCTATTAACCCA-AAAGAATTCAAGTATG 1886
|||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 1730 CACAGTTACCTGGCTAGCTTTCTGGGTTGATCCTATTAA-CCAGAAAGAATTCAAGTATG 1788
Query 1887 TATTTTTGGGAGCTGGCAGTTCTCTGAAAGGGCTGAGCGACAAAGAGAAGTACGAGAAAG 1946
||||||||| | || ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1789 TATTTTTGGCACCTAGCAGTGCTATGAAAGGGCTGAGCGACAAAGAGAAGTACGAGAAAG 1848
Query 1947 CTAGGAATCTTACGGATCATATAGATAATATAAGAACAACATACACCAAGAATTTTACTG 2006
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1849 CTAGGAATCTTACGGACCATATAGATAATATAAGGACAACATACACCAAGAATTTTACCG 1908
Query 2007 CCAAGGATGTTAAAATGAGGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGC 2066
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 CCAAGGATGTTACAACGAAGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGC 1968
Query 2067 TTAGGGCTGGAAATGAGAAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAA 2126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 TTAGGGCTGGAAATGAGAAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAA 2028
Query 2127 AAGTTGGAAATGTGGAGTGTATTCCTCCAAATAAAATAAAGTTTGATTTTCTTGGTAAGG 2186
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2029 AAGTTGGAAATGTGGAGTGTATTCCTCCAAATAAAATAAAGTTTGACTTTCTTGGTAAGG 2088
Query 2187 ATTCAATCCAGTATGTGAACACAGTCGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGAC 2246
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2089 ATTCAATCCAGTATGTGAACACAGTTGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGAC 2148
Query 2247 AGTTCCAGGCGGGAAAATCCAAAACAGATGATCTTTTTGATGAGTTAGACACAAGTAAAC 2306
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2149 AGTTCCAGGCGGGAAAATCCAAAACAGATGATCTTTTTGATGAGTTGGACACAAGTAAAC 2208
Query 2307 TGAATGCTCATTTGAAGGAACTTGTGCCTGGTCTCACAGCTAAAGTATTCCGTACATATA 2366
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2209 TGAATGCTCATCTGAAGGAACTTGTGCCTGGTCTCACAGCCAAAGTATTCCGTACATATA 2268
Query 2367 ATGCTTCCATCACTTTGGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGATGTT-ACT 2425
||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 2269 ATGCTTCCATCACTTTGGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGAT-TTAAAT 2327
Query 2426 CAAAAAATAGTAGTTTATCAGAAAGCAAATAAGGAGGTTGCCATAATCTGCAATCATCAG 2485
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 2328 CAGAAAATAGTAGTTTATCAGAAAGCAAACAAGGAGGTTGCCATAATCTGTAATCATCAG 2387
Query 2486 CGTACTGTATCAAAGACACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAA 2545
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2388 CGTACTGTATCAAAGTCACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAA 2447
Query 2546 CTCAAGGAGGTTCTTAAAGAGCTCAAAACTAATCTTGACCGGGCTAAAAAGGGAAAACCA 2605
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2448 CTCAAGGAGGGTCTTAAAGAGCTCAAAACTAATCTTGACCGGGCTAAAAAGGGAAAACCA 2507
Query 2606 CCATTGGAAGGTTCTGATGGAAAGAAGATTAGAAGCTTAGAACCAAACGCGTGGGAGAAG 2665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2508 CCATTGGAAGGTTCTGATGGAAAGAAGATTAGAAGCTTAGAACCAAACGCGTGGGAGAAG 2567
Query 2666 AAGATTGCTCAACAGAGTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAAGAG 2725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2568 AAGATTGCTCAACAGAGTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAAGAG 2627
Query 2726 GACTTGAAAACAGTGGCACTGGGCACGTCTAAGATCAACTACCTGGATCCTAGAATCACA 2785
||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 2628 GACTTGAAAACCGTGGCACTAGGCACATCTAAGATCAATTACCTGGATCCTAGAATCACG 2687
Query 2786 GTTGCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCTTTTG 2845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2688 GTTGCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCTTTTG 2747
Query 2846 GAGAAGTTTGCGTGGGCAATGGATGTAGAACCCGA 2880
||||| |||||||||||||||||||||||||||||
Sbjct 2748 GAGAAATTTGCGTGGGCAATGGATGTAGAACCCGA 2782
Score = 182 bits (98), Expect = 2e-44
Identities = 157/182 (86%), Gaps = 17/182 (9%)
Strand=Plus/Plus
Query 2881 AGCAAAGAGAAAACCGGCCTTTCTTCTATTCATCTTCCTCCCTTGTTTAGAATTTTATTA 2940
||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 2868 AGCAAAGAGAAAACCGGCCTTTCTTCTATTCATCTTCCTCCTTTGTTTAGAACCTT-TTA 2926
Query 2941 CCTTAGTGAGTAAAAAACATGAACATGTCAAGCTGTTTCATTAGTGTC-TTTTTTAACAT 2999
|| |||||||||||||| | || | |||||||||||||||||||| |||||||||||
Sbjct 2927 CCGTAGTGAGTAAAAAA-A--AA--T-TCAAGCTGTTTCATTAGTGTTATTTTTTAACAT 2980
Query 3000 TA---CTATGACTCAAATGTTATGTTATTTGTAACATTACTATGATTAAAGAAATAGAAA 3056
|| |||||||| ||||| |||||||||| | || | |||||||||||||||||||
Sbjct 2981 TATTACTATGACTAAAATGCTATGTTATTTTT--CA---C-ATGATTAAAGAAATAGAAA 3034
Query 3057 AT 3058
||
Sbjct 3035 AT 3036
> Ahg329014 jgi|Araly1|329014|fgenesh1_pm.C_scaffold_7001241
Length=2358
Score = 1773 bits (960), Expect = 0.0
Identities = 1859/2277 (82%), Gaps = 126/2277 (6%)
Strand=Plus/Plus
Query 643 AATTATAAAAGACGAGTC--A-GATGATGAAACTCCAATCTCGTCAATGTTTCGGAAGAA 699
|||||| ||||| ||||| | ||||||||| ||||||| ||||||| |||||| |||||
Sbjct 150 AATTATTAAAGATGAGTCTGATGATGATGAAGCTCCAATATCGTCAAGGTTTCGAAAGAA 209
Query 700 GATTGATAGTGGGATGTCAGGGGGC-AACCAGCTCTCCAATGATGAAAAGAAACCTTTGG 758
|| || || |||| | ||||| || ||| || ||| | ||||||||| ||| ||||||
Sbjct 210 GAATGGTAATGGGGTTTCAGGTAGCAAACAAG-ACTCTACTGATGAAAATAAATCTTTGG 268
Query 759 TTCAA-AAGTTGCATCAGAATGGTTCCACAGTTAAGAATGAA-GTGCCGAATGGTAAGGT 816
|| || |||||| | ||||||| |||||| || || ||||| || || || ||| | |
Sbjct 269 TT-AATAAGTTG-A--AGAATGGCTCCACACTTGAGCATGAATGTTCC-AA-GGT-A--T 319
Query 817 ATTAGGTAAGAGACCTCTGGAGAAGAATAGTTCTGCAGATCAATCTTCCT-TGAAGAAGG 875
| || |||||| ||||||||||| ||||||||||||||||||| || ||||||| |
Sbjct 320 -CT-GGCAAGAGAATTCTGGAGAAGAGCAGTTCTGCAGATCAATCTT-CTATGAAGAA-G 375
Query 876 C-CAAAATATCAGCTTCACCTACTTCAG-TGAAAATGAAACAAGATTCTGTCAAGAAAGA 933
| ||| ||||| ||||| |||| |||| || ||||||||||||||| | || ||| |
Sbjct 376 CTCAAGGTATCATCTTCATCTACGTCAGTTG-CCATGAAACAAGATTCTTTGAA-AAA-A 432
Query 934 GATAGATGATAAG-GGAAGGGTTTTGGTTTCACCAAAAATGAAAGCTAAACAGTTATCTA 992
||| ||||||| |||| |||| || ||||| ||| ||| | |||| | |
Sbjct 433 -CTAGGTGATAAGAGGAA-GGTTGAAGTATCACC-TAAA--AAA--TTGTCAGTCA--AA 483
Query 993 CCAGA-GAAGA-TGGAA-CtgatgatgatgatgatgatgatgTTCCGATAT-CCAAGAGA 1048
||| ||| | | ||| ||||||||||||||||||||||||||| || | ||||||||
Sbjct 484 GAAGATGAA-ACT-GAAGATGATGATGATGATGATGATGATGTTCCCAT-TGCCAAGAGA 540
Query 1049 TTCAAATCAGATTCCTCCAA-CAGTAACACATCATCTGCAAAGCCAAAAGCAGTAAAACT 1107
|||| ||||| |||||||| | ||| ||| | ||||||||||| |||| |||||||
Sbjct 541 ATCAAGTCAGAATCCTCCAAGTA-TAAAACACCCTCTGCAAAGCCTAAAGTGGTAAAAC- 598
Query 1108 A-AATTCTACTTCATCAGCTGCAAAG-CCAAAAGCGAGAAA-TGTCGTTTCTCCTAGGTC 1164
| | |||||||||||||||| | ||| || |||| || ||| || ||||||||| |||
Sbjct 599 AGAGTTCTACTTCATCAGCTACGAAGTCC-AAAGTGA-AAAGAGTAGTTTCTCCTCCGTC 656
Query 1165 C-AGAGCAATGACCAAAAACACTAAGAAAGTAACGAAGGACTCAAAATATT-CCACGTCT 1222
| ||| ||| || |||||| | |||||||| | ||| || || || | || | | | |
Sbjct 657 CAAGA-CAAGGAGCAAAAAGTCCAAGAAAGTGATGAACGAATCTAAGT-TTGCTAAGAGT 714
Query 1223 TCAAAATCATCACCTT-CCT-CTGGAGATGGGCAAAAGAAATGGACTACTTTGGTGCACA 1280
|| ||| | ||||| ||| |||| ||||| ||||||||||||| || ||||| ||||
Sbjct 715 TC-AAA--A--ACCTTACCTACTGGCGATGGTAAAAAGAAATGGACAACCTTGGTACACA 769
Query 1281 ACGGTGT-AATATTTCCACCGCCATACAAGCCTCATGGCATTAAGATTTTGTACAAGGGG 1339
| ||||| | | |||||||| ||||| || |||||||| || ||||||| || ||||||
Sbjct 770 ATGGTGTCACT-TTTCCACCTCCATATAAACCTCATGGGGTTCAGATTTTATATAAGGGG 828
Query 1340 AAACCTGTTGACCTAACTATTGAACAAGAAGAGGTTGCGACTATGTTTGCAGTGATGAGA 1399
|| || || || || || ||| |||||||||||||| || |||||||| |||||||||
Sbjct 829 AATCCAGTCAACTTATCTCCTGACCAAGAAGAGGTTGCAACGATGTTTGCTGTGATGAGA 888
Query 1400 GAGACAGA-TTATTATACTAAACCTCAATTTCGGGAGAATTTCTGGAATGACTGGCGAAG 1458
|||||||| || ||||| |||||||| |||| |||| |||||||||||||| |||||||
Sbjct 889 GAGACAGACTT-TTATAATAAACCTCGATTTAGGGAAAATTTCTGGAATGATTGGCGAAA 947
Query 1459 ACTGCTTGGCAAGAAACATGTGATACAGAAGTTGGATGATTGTGACTTTACTCCCATATA 1518
||| ||||||||||| ||||||||||||||| ||||||||||||||||||| || |||||
Sbjct 948 ACTACTTGGCAAGAATCATGTGATACAGAAGCTGGATGATTGTGACTTTACACCAATATA 1007
Query 1519 TGAGTGGCATTTGgaagagaaagagaagaagaaacaaatg-agcacagaggagaaaaaag 1577
||| |||||||||| | ||||| ||||||||||| ||| | | | | ||| |||||
Sbjct 1008 TGATTGGCATTTGG-A-AGAAA-AGAAGAAGAAA-AAA-GCTTCGC-CA-GAG-AAAAA- 1058
Query 1578 ctttgaaagaggagaaaatgaagcaagaGGAGAAATATATGTGGGCTGTTGTTGATGGTG 1637
| || || | | | | |||||||||||||||||||||||| || ||||
Sbjct 1059 C--------CCGA-AACA-G--G---G-GGAGAAATATATGTGGGCTGTTGTGGACGGTG 1102
Query 1638 TCAAAGAGAAGATTGGTAATTTCAGAGTGGAACCGCCTGGCCTTTTCAGAGGCCGTGGAG 1697
||||||||||| |||| |||||||| || ||||| || || || ||| |||| || ||||
Sbjct 1103 TCAAAGAGAAGGTTGGGAATTTCAGTGTAGAACCTCCCGGGCTATTCCGAGGTCGAGGAG 1162
Query 1698 AACATCCCAAGATGGGAAAACT-AAAGAAGCGTATCCATCCAT-GCGAGATCACCT-TAA 1754
||||||||||||| |||||| | ||| | |||||| |||| | | || |||| || |||
Sbjct 1163 AACATCCCAAGATAGGAAAATTGAAA-AGGCGTATATATCC-TAGTGACATCA-CTCTAA 1219
Query 1755 ATATCGGGAAAGGTGCTCCTATTCCAGAATGTCCAATTGCTGGTGAAAGATGGAAAGAAG 1814
|||||||||||| ||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 1220 ATATCGGGAAAGATGCTCCTATACCTGAATGTCCCATCCCTGGTGAAAGATGGAAAGAAG 1279
Query 1815 TAAAGCATGATAACACAGTCACCTGGCTAGCTTTCTGGGCTGATCCTATTAACCCAAAA- 1873
||||||||||||||||||||| |||||||||| ||||| ||||||||| |||| |
Sbjct 1280 TAAAGCATGATAACACAGTCATCTGGCTAGCTATCTGGAAAGATCCTATTCACCCGGGAC 1339
Query 1874 GAATTCAAGTATGTATTTT-TGGGAGCTGGCAGTTCTCTGAAAGGGCTGAGCGACAAAGA 1932
| | ||||||||| || | || |||| ||||||| | |||||| | |||||||| ||
Sbjct 1340 GC-TACAAGTATGT-TTCTCTGTCAGCTAGCAGTTCACAGAAAGGTCAAAGCGACAA-GA 1396
Query 1933 -GAAGTACGAGAAAGCTAGGAATCTTACGGATCATATAGATAATATAAGAACAACATACA 1991
|||||| |||||||| |||||||||| ||| || ||||| ||||||||| |||| ||||
Sbjct 1397 AGAAGTATGAGAAAGCCAGGAATCTTAAGGACCACATAGAAAATATAAGAGCAACGTACA 1456
Query 1992 CCAAGAATTTTACTGCCAAGGATGTTA-AAAT-GAGGCAAATTGCTGTGGCGACATATCT 2049
|||||||||||||||||||||||||| |||| || ||||| |||||||| || |||||
Sbjct 1457 CCAAGAATTTTACTGCCAAGGATGTTTCAAATCGA--CAAATAGCTGTGGCTACCTATCT 1514
Query 2050 CATTGATAAATTGGCGCTTAGGGCTGGAAATGAGAAGGATGATGATGAGGCCGACACTGT 2109
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1515 CATTGATAAATTGGCACTTAGAGCTGGAAATGAGAAGGATGATGATGAGGCGGACACAGT 1574
Query 2110 TGGTTGTTGTACTTTAAAAGTTGGAAATGTGGAGTGTATTCCTCCAAATAAAATAAAGTT 2169
|||||| ||||| |||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 1575 TGGTTGCTGTACATTAAAAGTAGGAAATGTGGAGTGTGTTCCTCCAAATAAGCTAAAGTT 1634
Query 2170 TGATTTTCTTGGTAAGGATTCAATCCAGTATGTGAACACAGTCGAGGTTGAGCCTCTTGT 2229
||| || |||||||| ||||||||||| |||||||| || ||||| ||||| ||||||||
Sbjct 1635 TGACTTCCTTGGTAAAGATTCAATCCAATATGTGAATACCGTCGAAGTTGAACCTCTTGT 1694
Query 2230 TTACAAGGCCATTGGACAGTTCCAGGCGGGAAAATCCAAAA-CAGATGATCTTTTTGATG 2288
|||||| ||||||| |||||||| ||| || ||||| ||| |||| |||||||||||||
Sbjct 1695 TTACAAAGCCATTGCACAGTTCCGGGCTGGTAAATC-AAATTCAGACGATCTTTTTGATG 1753
Query 2289 AGTTAGACACAAGTAAACTGAATGCTCAT-TTGAAGGAACTTGTGCCTGGTCTCACAGCT 2347
||||||||||||| ||||||||||||||| || ||||| ||||| |||| |||||||||
Sbjct 1754 AGTTAGACACAAGCAAACTGAATGCTCATCTT-AAGGAGCTTGTAACTGGCCTCACAGCT 1812
Query 2348 AAAGTATTCCGTACATATAATGCTTCCATCACTTTGGATGAAATGCTGAGTCAAGAAACC 2407
|||||||||||||| || ||||| |||||||| |||||| |||| |||| |||||||||
Sbjct 1813 AAAGTATTCCGTACTTACAATGCATCCATCACGCTGGATGTAATGTTGAGGCAAGAAACC 1872
Query 2408 AAAGATGGCGATGTTACTCAAAAAATAGTAGTTTATCAGAAAGCAAATAAGGAGGTTGCC 2467
| ||| || ||||||| || ||| |||||||||||||| ||||||| |||||||| ||
Sbjct 1873 AGAGAGGGTGATGTTAAACAGAAAGTAGTAGTTTATCAGCAAGCAAACAAGGAGGTAGCG 1932
Query 2468 ATAATCTGCAATCATCAGCGTACTGTATCAAAGACACATGGTGCGCAAATTGAAAAATTG 2527
|||| || ||||| |||||||| || |||||| | || ||||| ||||| | | ||||
Sbjct 1933 TTAATTTGTAATCACCAGCGTACCGTTTCAAAGTCTCACGGTGCACAAATCCAGAGATTG 1992
Query 2528 ACTGCGAGAA-TAGAAGAACTCAAGGAGGTTCTTAAAGAGCTCAAAA-CTAATCTTG-AC 2584
||| || || |||||||||||||||||| ||||||||| ||||||| | ||| ||| |
Sbjct 1993 GCTG-GAAAAATAGAAGAACTCAAGGAGGGTCTTAAAGAACTCAAAAAC-AAT-TTGGAG 2049
Query 2585 CGGGCTAAAAAGGGAAAACCACCATTGGAAGGTTCTGATGGAAAGAAGATTAGAAGCTTA 2644
||||||||||||||||| | |||||||||||||| ||||||||||| | |||| | ||
Sbjct 2050 AGGGCTAAAAAGGGAAAATCTCCATTGGAAGGTTCAGATGGAAAGAAAACAAGAAACATA 2109
Query 2645 GAA-CCA-AACGCGTGGGAGAAGAAGATTGCTCAACAGA-G-TGCTAAGATCGAGAAAAT 2700
| ||| || ||||||||||||||||| |||||||||| | || ||||| ||||| ||
Sbjct 2110 -ACTCCAGAA-GCGTGGGAGAAGAAGATAGCTCAACAGAAGATG--AAGATAGAGAAGAT 2165
Query 2701 GGAACGAGACATGCATACAAAAGAGGACTTGAAAACAGTGGCACTGGGCACGTCTAAGAT 2760
|||| |||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 2166 GGAAGGAGACATGCAGACAAAGGAGGACTTGAAAACCGTGGCGCTGGGCACGTCTAAGAT 2225
Query 2761 CAACTACCTGGATCCTAGAATCACAGTTGCATGGTGCAAACGTCATGAAGTACCAATCGA 2820
||||||| |||||||||| ||||| || || ||||||||||| ||||||||||| || ||
Sbjct 2226 CAACTACATGGATCCTAGGATCACGGTCGCGTGGTGCAAACGCCATGAAGTACCCATTGA 2285
Query 2821 AAAGATATTCACCAAGTCTCTTTTGGAGAAGTTTGCGTGGGCAATGGATGTAGAACC 2877
||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||
Sbjct 2286 AAAGATATTCAACAAGTCTCTGCTGGAGAAATTTGCGTGGGCAATGGACGTAGAACC 2342
> Ahg950187 jgi|Araly1|950187|scaffold_802074.1
Length=2779
Score = 1247 bits (675), Expect = 0.0
Identities = 1371/1700 (81%), Gaps = 76/1700 (4%)
Strand=Plus/Plus
Query 1198 GAAGGACTCAAAATATTCCACGTCTTCAAAATCATCACCTTCCTCTGGAGATGGGCAAAA 1257
||| || || || ||||| | ||||||||||||| ||| | ||||||||||||||||
Sbjct 1061 GAAAGATTCTAAGTATTCGAAATCTTCAAAATCATTACC-T--TCTGGAGATGGGCAAAC 1117
Query 1258 GAAATGGACTACTTTGGTGCACAACGGTGTAATATTTCCACCGCCATACAAGCCTCATGG 1317
|||||||| ||| | | |||||| ||||| || |||||||| |||| |||| ||||||
Sbjct 1118 GAAATGGAAAACTCTAGAGCACAATGGTGTCATTTTTCCACCTTCATATAAGCGTCATGG 1177
Query 1318 CATTAAGATTTTGTA-CAAGGGGAAA-CCTGTTGACCTAACTATTGAACAAGAAGAGGTT 1375
||||||| ||||| | | |||||| ||||||||| ||||| ||||||||||||||||
Sbjct 1178 GGTTAAGATATTGTATC-A-GGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTT 1235
Query 1376 GCGACTATGTTTGCAGTGATGAGAGAGACAGATTATTATACTAAACCTCAATTTC-GGGA 1434
|| ||||||||||| |||||||| || ||||| ||||| | |||||| || ||| | ||
Sbjct 1236 GCAACTATGTTTGCGGTGATGAGGGAAACAGAATATTACAATAAACC-AAAGTTCAGAGA 1294
Query 1435 GAATTTCTGGAATGACTGGCGAAGACTGCTTGGCAAGAAACATGTGA-TACAGAAGTTGG 1493
||||||||||||||| ||||| ||||| ||||| ||||| ||| ||| || | || ||||
Sbjct 1295 GAATTTCTGGAATGATTGGCGGAGACTACTTGGAAAGAACCATATGATTA-AAAATTTGG 1353
Query 1494 ATGATTGTGACTTTACTCCCATATATGAGTGGCATTTGgaagagaaagaga-agaagaaa 1552
||||||||||||| |||||||||||||| ||| || | | ||||| |||| | ||||||
Sbjct 1354 ATGATTGTGACTTCACTCCCATATATGAATGGTATATACAGGAGAAGGAGACA-AAGAAA 1412
Query 1553 caaatgagc-acagaggagaaaaaag-ctttgaaagaggagaaaatgaagcaagaGGAGA 1610
| ||||| | |||| ||| |||| | |||||||||||||||| | ||||| |||||||
Sbjct 1413 CTAATGA-CTGCAGAAGAG-AAAAGGATTTTGAAAGAGGAGAAATTAAAGCAGGAGGAGA 1470
Query 1611 AATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAAGATTGGTAATTTCAGAGTGGAAC 1670
|||| |||||||||||| |||||||||||| |||| |||||| ||||||||||| || |
Sbjct 1471 AATACATGTGGGCTGTTCTTGATGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGAGC 1530
Query 1671 CGCCTGGCCT-TTTCAGAGGCCGTGGAGAACATCCCAAGATGGGAAAACT-AAAGAAGCG 1728
| ||||| | |||| ||||||| ||||||||||| |||||||| ||||| ||| |||||
Sbjct 1531 CCCCTGGGTTGTTTC-GAGGCCGGGGAGAACATCCTAAGATGGGGAAACTGAAA-AAGCG 1588
Query 1729 TATCCATCCATGCGAGATCACCTTAAATATCGGGAAAG-GTGCTCCTATTCCAGAATGTC 1787
|| | ||| || || || || | || || || |||| | || ||| |||||||||| |
Sbjct 1589 GATTCGTCCTTGTGATATTACAATCAACATTGGTAAAGAG-GCGCCTGTTCCAGAATGCC 1647
Query 1788 CAATTGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAACACAGTCACCTGGCTAGCTT 1847
| || |||||||||||||||||||||| |||||||| || || || |||||||| ||||
Sbjct 1648 CTATCCCTGGTGAAAGATGGAAAGAAGTTAAGCATGACAATACTGTTACCTGGCTTGCTT 1707
Query 1848 TCTGGGCTGATCCTATTAACCCAAAAGAATTCAAGTATGTATTTTTGGGAGCTGGCAGTT 1907
| ||| ||||||||| || |||||||| |||||||||||||| |||| |||| ||||||
Sbjct 1708 TTTGGAATGATCCTATCAATCCAAAAGAGTTCAAGTATGTATTCTTGGCAGCTAGCAGTT 1767
Query 1908 C-TCTGAAAGGG-CTGAGCGACAAAGAGAAGTACGAGAAAGCTAGGAATCTTACGGATCA 1965
| | || ||||| | |||||||| |||||||| ||| | | || || | |
Sbjct 1768 CGT-TG-AAGGGACAAAGCGACAAGGAGAAGTATGAG--A---A--AA----AC---T-A 1810
Query 1966 TATAGATAATATAAGAACAACATACACC-AAGAATTTTACTGCCAAGGATGTTAA-AATG 2023
||||| | ||| ||| || |||||||| ||| |||||| | |||||||| ||| || |
Sbjct 1811 TATAGGGAGTATTAGAGCAGCATACACCAAAG-ATTTTAATAACAAGGATG-TAACAAAG 1868
Query 2024 AGGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGCTTAGGGCTGGAAATGAG 2083
||||||| || || |||||||||||||| ||||| | || ||||||||||||||||||
Sbjct 1869 CGGCAAATAGCAGTTGCGACATATCTCATCGATAAGCTAGCCCTTAGGGCTGGAAATGAG 1928
Query 2084 AAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAAAAGTTGGAAATGTGGAG 2143
|||||||| |||||||| || ||||||||||| ||||| || ||||| ||||||||||||
Sbjct 1929 AAGGATGACGATGAGGCAGATACTGTTGGTTGCTGTACATTGAAAGTAGGAAATGTGGAG 1988
Query 2144 TGTATTCCTCCAAATAAAATAAAGTTTGATTTTCTTGGTAAGGATTCAATCCAGTATGTG 2203
||||||||||||||||| |||||||||| || ||||||||||| || || ||||||||
Sbjct 1989 TGTATTCCTCCAAATAAGTTAAAGTTTGACTTCCTTGGTAAGGACTCTATTCAGTATGTA 2048
Query 2204 AACACAGTCGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGACAGTTCCAGGCGGGAAAA 2263
|||||||| |||||||||||||| || || ||||| ||||| |||||||| |||||||||
Sbjct 2049 AACACAGTTGAGGTTGAGCCTCTGGTGTATAAGGCAATTGGGCAGTTCCAAGCGGGAAAA 2108
Query 2264 TCCAAAACAGATGATCTTTTTGATGAGTTAGACACAAGTAAACTGAATGCTCAT-TTGAA 2322
|| ||||| |||||||| ||||||||| |||| || ||||| ||||||||| || ||
Sbjct 2109 TCGAAAACCGATGATCTATTTGATGAGCTAGATACTTCAAAACTCAATGCTCATCTT-AA 2167
Query 2323 GGAACTTGTGCCTGGTCTCACAGCTAAAGTATTCCGTACATATAATGCTTCCATCACTTT 2382
||| ||| || ||||||||||||| ||||| ||||||||||||||||| |||||||| ||
Sbjct 2168 GGAGCTTATGGCTGGTCTCACAGCCAAAGTCTTCCGTACATATAATGCATCCATCACATT 2227
Query 2383 GGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGATGTTACTCAAAAAATAGTAGTTTA 2442
|||| |||| ||||| ||||||||| |||||| || ||| || ||||| | || |||||
Sbjct 2228 GGATTTAATGTTGAGTAAAGAAACCAGAGATGGTGACGTTCCTGAAAAAGTGGTGGTTTA 2287
Query 2443 TCAGAAAGCAAATAAGGAGGTTGCCATAATCTGCAATCATCAGCGTACTGTATCAAAGA- 2501
|||| ||||||| ||||||||||| || || || || ||||| |||||||| ||||| |
Sbjct 2288 TCAGCAAGCAAACAAGGAGGTTGCTATCATTTGTAACCATCAACGTACTGTGTCAAA-AT 2346
Query 2502 CACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAACTCAAGG-AGGTTCTT 2560
| || || || ||| | || || || ||| || |||||||||||| |||| || |
Sbjct 2347 CTCACGGAGCACAAGTCGAGAAGCTGGCTGTGAAAATAGAAGAACT-AAGGGAGCAAATA 2405
Query 2561 AAAGAGCTCAAAACTAATCTTGACCGGGCTAAAAAGGGAA-AACCACCATTGGAA-GGT- 2617
|||||||| || | | |||| ||| |||||||||| |||| ||| |||||| || ||
Sbjct 2406 AAAGAGCTGAATATTGATCTCGACAGGGCTAAAAAAGGAAGAAC-ACCATT--AATGGGA 2462
Query 2618 TCTGATGGAAAGA-AGATTAG-AAGCTTAGA-ACCA-AACGCGTGGGAGAAGAAGAT--T 2671
||||||||||||| | | || || |||| | ||| || || | |||||||||||| |
Sbjct 2463 TCTGATGGAAAGAGAAAG-AGGAA-CTTA-ACACCTGAA-GCATTGGAGAAGAAGATAAT 2518
Query 2672 GCTCAACAG-A-GTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAAGAGGACT 2729
|| ||| | | | | |||||||||||| |||||| | || ||||| || || || || |
Sbjct 2519 GCA-AAC-GCAAG-G-TAAGATCGAGAAGATGGAAAGGGATATGCAAACGAAGGAAGA-T 2573
Query 2730 -TGAAAACAGTGGCACTGGGCACGTCTAAGATCAACTACCTGGATCCTAGAATCACAGTT 2788
||||||| || ||| ||||||| ||||||||||| ||| |||||||||| ||||| |||
Sbjct 2574 ATGAAAACCGTTGCATTGGGCACATCTAAGATCAATTACATGGATCCTAGGATCACTGTT 2633
Query 2789 GCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCTTTTGGAG 2848
|||||||||||||| || || || || || || |||||||| | |||||||||| |||
Sbjct 2634 GCATGGTGCAAACGACACGATGTCCCCATTGAGAAGATATTTAACAAGTCTCTTCTGGCT 2693
Query 2849 AAGTTTGCGTGGGCAATGGA 2868
||||| || |||||||||||
Sbjct 2694 AAGTTCGCTTGGGCAATGGA 2713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116213337495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5