BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55310.1
Length=3068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950187 jgi|Araly1|950187|scaffold_802074.1 4346 0.0
Ahg495615 jgi|Araly1|495615|fgenesh2_kg.8__1431__AT5G55300.1 1303 0.0
Ahg329014 jgi|Araly1|329014|fgenesh1_pm.C_scaffold_7001241 1053 0.0
> Ahg950187 jgi|Araly1|950187|scaffold_802074.1
Length=2779
Score = 4346 bits (2353), Expect = 0.0
Identities = 2657/2802 (95%), Gaps = 28/2802 (1%)
Strand=Plus/Plus
Query 82 AATAACTTGCCTTGTTGGGTATGGCCACTGAGGCGTTTGTGAAACCCGTTGTACCAAATG 141
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1 AATAACTTGCCTTGTTGGGTATGGCCACTGAGGCGTTTGTGAAGCCAGTTGTGCCAAATG 60
Query 142 GTCATGACGGGTACGAAGATGAAGATGAAGATGACATTCCTTTGGTTTTTAAGAGAAACA 201
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 61 GTCATGACGGGTACGAGGATGAAGATGAAGATGACATTCCTTTGGTGTTTAAGAGAACCA 120
Query 202 GTAATACAGCAGCTACAACAAATCGTCCTAGCCCTATTAATAATGCTATGAGAAACTCGG 261
||||||||||| | || ||||||||| | || |||||| |||||||||||||||||||||
Sbjct 121 GTAATACAGCATCAACCACAAATCGTTCAAGGCCTATTGATAATGCTATGAGAAACTCGG 180
Query 262 CTATTGGTTCCACCAAGTCCTCACCACCAATGAGGTCTCCTTTAACAAGCCCGAATAGGT 321
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTATTGGCTCCACCAAGTCCCCACCACCAATGAGGTCTCCTTTAACAAGCCCGAATAGGT 240
Query 322 CAGCTTCTTCATCCACTAGAAGTTCAATGATGAAA-C--CAGCATTACCGTCATCTTCAT 378
||||||||||||| |||||||||||||||||||| | || ||||||||||||||||||
Sbjct 241 CAGCTTCTTCATCTGCTAGAAGTTCAATGATGAAACCAACAACATTACCGTCATCTTCAT 300
Query 379 CTGTTCAACGTTCGACTCTGAAGTCACCGTTGCGAGATGATAGATCTGTTGTTGCTAAGG 438
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 CTGTTCAACGTTCGACTGTGAAGTCACCGTTGCGAGATGATAGATCCGTTGTTGCTAAGG 360
Query 439 AGAGGAACGGTTTTGGG-AAAGCTCCTTCTGTGTCTAAAAGTGATGATGAGGATTCTGAG 497
|||||||||| |||||| |||||||| ||||| || |||| |||||||||||||||||||
Sbjct 361 AGAGGAACGG-TTTGGGAAAAGCTCCCTCTGTCTCCAAAACTGATGATGAGGATTCTGAG 419
Query 498 GATGATAAACCATTGAGTGCTAGGCTTAAATTGGATTCTAAAGAGGTTACCAAACAGCCA 557
||||||||||| |||||||| || |||||| |||||||||| ||||||| |||||||||
Sbjct 420 GATGATAAACCCTTGAGTGCCAGACTTAAAATGGATTCTAAGGAGGTTATCAAACAGCCG 479
Query 558 AGCTCTTCAGGACGTGGGAGTACGCAGCAAGCAGTACAAAAGAGCAACATGAGGCCTCAG 617
|||||||| || ||||||| || ||||||||||||||| |||||||||||||||||||||
Sbjct 480 AGCTCTTCCGGGCGTGGGAATATGCAGCAAGCAGTACAGAAGAGCAACATGAGGCCTCAG 539
Query 618 GGATTGAGTGATTACACTAAAAAGAAAGTTTTGGATGAGAGAGCTCCCATGTCCTCAACG 677
|||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 540 GGATCGAGCGATAACACTAAAAAGAAAGTTTTGGATGAGAGAGCTCCCGTGTCCTCAATG 599
Query 678 GTTCAGACAAAGACCAGTGTGGGTACATCAAGTAGCAAGCCTGTTCATATTGAACAGAAG 737
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 GTTCAGACAAAGACCAGTGTGGGTACATCAAGTAGCAAGCCTGTTCATAATGAACAGAAG 659
Query 738 AGACCTTTGGTTAACAATATTGATCGGAATGGTTTGAAACCTAAGACTGAAGGGCACAGT 797
|||||||||||||||||||| |||||||||| || ||||| |||||||||||| ||||
Sbjct 660 AGACCTTTGGTTAACAATATCAATCGGAATGGCTTAAAACCGAAGACTGAAGGGGTCAGT 719
Query 798 TCTCAGGCACCTGCTAAGAGACCTCTTGAAAAGGGGAGTTCTTCGAATCAATCTTCTGTT 857
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TCTCAGGCACCTGCTAAGAGACCTCTTGAGAAGGGGAGTTCTTCGAATCAATCTTCTGTT 779
Query 858 AAGAGGCCCAAGCTGTCAGAGCCAGCTAGACCAGTGAAAGTGGAGCAAGGTTCACATATT 917
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 780 AAGAGGCTCAAGCTGTCAGAGCCAGCTAGACCAGTGAAAGTGGAACAAGGTTCACATAAT 839
Query 918 TCAGCTACGCAAGATGCCAAAGGAAAGAATCTGGATGCATCGAAGCCGTTGAGAGCTAAC 977
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 GCAGCTACGCAAGATGCCAAAGGAAAGAATCTGGATGCATCAAAGCCGTTGAGAGCTAAC 899
Query 978 CAAGCAACTGTTAAAGAAGATAACTCAGATGGTGATGATCATGTTCCTATTGCCTCAAGG 1037
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 AAAGCAACTGTTAAAGAAGATAACTCAGATGATGATGATCATGTTCCTATTGCCTCAAGG 959
Query 1038 ATGAAGTCAGATTCCTCAAATAATAAATCGTCTTCCGCAAAGCCAAGTTCTAGTAAAATG 1097
|| |||||||||||||| | ||||| || ||||| ||||||||||||||||||| |
Sbjct 960 ATAAAGTCAGATTCCTC-----A-AAATCTTCCTCCGCGAAGCCAAGTTCTAGTAAAACG 1013
Query 1098 ATAGCGTCTTCATCCAGAACAATAGCTCAAAAGCCCAACAAATGGGTGAAAGATTCTAAA 1157
|| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1014 ATCGCTTCTTCATCCAGAATAATAGCTAAAAAGCCCAACAAATGGGTGAAAGATTCTAAG 1073
Query 1158 TATTCGAAATCTTCTAAATCATTACCTTCTGGAGATGGGCAAAAGAAATGGAAAACTCTA 1217
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1074 TATTCGAAATCTTCAAAATCATTACCTTCTGGAGATGGGCAAACGAAATGGAAAACTCTA 1133
Query 1218 CAGCACAATGGTGTTATTTTTCCACCTCCATATAAGCGTCATGGGGTTAAGATATTGT-T 1276
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 1134 GAGCACAATGGTGTCATTTTTCCACCTTCATATAAGCGTCATGGGGTTAAGATATTGTAT 1193
Query 1277 CCAGGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTTGCAACTATGTTTGCGGT 1336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 -CAGGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTTGCAACTATGTTTGCGGT 1252
Query 1337 GATGAGGGAAACAGAATATTATAAAAAACCAAAGTTCAGAGAGAATTTCTGGAATGATTG 1396
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1253 GATGAGGGAAACAGAATATTACAATAAACCAAAGTTCAGAGAGAATTTCTGGAATGATTG 1312
Query 1397 GCGGAAACTACTTGGAAAGAACCATATGATTAAAAGTTTAGATGATTGTGACTTCACTCC 1456
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1313 GCGGAGACTACTTGGAAAGAACCATATGATTAAAAATTTGGATGATTGTGACTTCACTCC 1372
Query 1457 CATATATGAATGGTATATGCAGGAGAAGGAGACAAAGAAACAAATGACTGCAGAAGAGAA 1516
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1373 CATATATGAATGGTATATACAGGAGAAGGAGACAAAGAAACTAATGACTGCAGAAGAGAA 1432
Query 1517 AAGGATTGTGAAAGAGGAGAAATTAAAGCAGGAGGAGAAATATATGTGGGCTGTTCTTGA 1576
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1433 AAGGATTTTGAAAGAGGAGAAATTAAAGCAGGAGGAGAAATACATGTGGGCTGTTCTTGA 1492
Query 1577 TGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGAGCCCCCTGGGTTGTTTCGAGGCCG 1636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGAGCCCCCTGGGTTGTTTCGAGGCCG 1552
Query 1637 GGGAGAACATCCCAAGATGGGGAAACTGAAAAAGCGGATTCGTCCTTGTGATATTACAAT 1696
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GGGAGAACATCCTAAGATGGGGAAACTGAAAAAGCGGATTCGTCCTTGTGATATTACAAT 1612
Query 1697 CAACATTGGTAAAGAGGCGCCTATTCCAGAATGCCCTATCCCTGGTGAAAGATGGAAAGA 1756
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1613 CAACATTGGTAAAGAGGCGCCTGTTCCAGAATGCCCTATCCCTGGTGAAAGATGGAAAGA 1672
Query 1757 AGTTAAGCATGACAATACTGTTACCTGGCTTGCTTTTTGGAGTGATCCTATCAATCCAAA 1816
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1673 AGTTAAGCATGACAATACTGTTACCTGGCTTGCTTTTTGGAATGATCCTATCAATCCAAA 1732
Query 1817 AGAGTTCAAGTATGTATTCTTGGCAGCTAGCAGTTCGTTGAAGGGACAAAGCGACAAAGA 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1733 AGAGTTCAAGTATGTATTCTTGGCAGCTAGCAGTTCGTTGAAGGGACAAAGCGACAAGGA 1792
Query 1877 GAAGTATGAGAAAGCGAGGAAGCTACATAACCATATAGGGAGTATTAGAGCAGCATACAC 1936
||||||||||||| | | ||| || || |||||||||||||||||||||||
Sbjct 1793 GAAGTATGAGAAA---A--A--CTA--TA----TA--GGGAGTATTAGAGCAGCATACAC 1837
Query 1937 CAAAGATTTTAATAACAAGGATGTAACAAAGCGGCAAATAGCAGTGGCAACATATCTCAT 1996
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1838 CAAAGATTTTAATAACAAGGATGTAACAAAGCGGCAAATAGCAGTTGCGACATATCTCAT 1897
Query 1997 CGATAAGCTAGCCCTTAGGGCTGGAAATGAGAAGGATGACGATGAGGCAGATACTGTTGG 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 CGATAAGCTAGCCCTTAGGGCTGGAAATGAGAAGGATGACGATGAGGCAGATACTGTTGG 1957
Query 2057 TTGTTGTACATTGAAAGTAGGAAACGTGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGA 2116
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1958 TTGCTGTACATTGAAAGTAGGAAATGTGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGA 2017
Query 2117 CTTCCTTGGTAAAGACTCTATTCAGTATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTA 2176
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2018 CTTCCTTGGTAAGGACTCTATTCAGTATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTA 2077
Query 2177 TAAGGCAATTGGGCAGTTCCAAGCAGGAAAATCGAAAACCGATGATCTCTTTGATGAGCT 2236
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2078 TAAGGCAATTGGGCAGTTCCAAGCGGGAAAATCGAAAACCGATGATCTATTTGATGAGCT 2137
Query 2237 AGATACTTCAAAACTCAATACTCATCTTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGT 2296
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2138 AGATACTTCAAAACTCAATGCTCATCTTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGT 2197
Query 2297 ATTCCGTACGTATAATGCATCCATCACATTGGATTTAATGTTGAGTAAAGAAACCAGAGA 2356
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2198 CTTCCGTACATATAATGCATCCATCACATTGGATTTAATGTTGAGTAAAGAAACCAGAGA 2257
Query 2357 CGGTGACGTTCCTGAAAAAGTGGTGGTTTATCAGCAAGCGAACAAGGAGGTTGCTATCAT 2416
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2258 TGGTGACGTTCCTGAAAAAGTGGTGGTTTATCAGCAAGCAAACAAGGAGGTTGCTATCAT 2317
Query 2417 TTGTAACCATCAACGTACTGTCTCGAAATCTCACGGAGCACAAGTGGAGAAGCTGGCTGT 2476
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 2318 TTGTAACCATCAACGTACTGTGTCAAAATCTCACGGAGCACAAGTCGAGAAGCTGGCTGT 2377
Query 2477 GAAAATAGAAGAACTAAGGGAGCAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAA 2536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2378 GAAAATAGAAGAACTAAGGGAGCAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAA 2437
Query 2537 GAAAGGAAGAACACCGTTAATGGGATCTGATGGAAAGAGAAAGAGGAACTTAACACCTGA 2596
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438 AAAAGGAAGAACACCATTAATGGGATCTGATGGAAAGAGAAAGAGGAACTTAACACCTGA 2497
Query 2597 AGCATTGGAGAAGAAGATAATGCAAACGCAAGGTAAGATCGAGAAGATGGAAAGAGATAT 2656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2498 AGCATTGGAGAAGAAGATAATGCAAACGCAAGGTAAGATCGAGAAGATGGAAAGGGATAT 2557
Query 2657 GCAAACAAAAGAAGATATGAAAACTGTCGCATTGGGCACATCTAAGATCAACTACATGGA 2716
|||||| || |||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 2558 GCAAACGAAGGAAGATATGAAAACCGTTGCATTGGGCACATCTAAGATCAATTACATGGA 2617
Query 2717 TCCTAGGATCACTGTTGCGTGGTGCAAACGACATGATGTCCCCATTGAGAAGATATTTAA 2776
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2618 TCCTAGGATCACTGTTGCATGGTGCAAACGACACGATGTCCCCATTGAGAAGATATTTAA 2677
Query 2777 CAAGTCTCTTCTGGCTAAGTTCGCTTGGGCAATGGATGTTGATCCTGAGTTCAGATTCTG 2836
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2678 CAAGTCTCTTCTGGCTAAGTTCGCTTGGGCAATGGACGTTGATCCTGAGTTCAGATTCTG 2737
Query 2837 TTCAAGTACCGATGAATAAATACATGTTCGTTGAGGCCAGTT 2878
|| ||| | ||||||||||||||| ||||||||||||||||
Sbjct 2738 TTTAAGCAATGATGAATAAATACATTTTCGTTGAGGCCAGTT 2779
> Ahg495615 jgi|Araly1|495615|fgenesh2_kg.8__1431__AT5G55300.1
Length=3036
Score = 1303 bits (705), Expect = 0.0
Identities = 1402/1731 (81%), Gaps = 78/1731 (5%)
Strand=Plus/Plus
Query 1146 AAA-GATTCTAAATATT-CGAAATCTTCTAAATCATTACC-T--TCTGGAGATGGGCAAA 1200
||| || || ||||||| || ||||| ||||| | ||| | |||||||||||||| |
Sbjct 1100 AAAGGACTCAAAATATTCCG-CGTCTTCGAAATCGTCACCTTCATCTGGAGATGGGCAGA 1158
Query 1201 AGAAATGGA-AAACTCTACAGCACAATGGTGTTATTTTTCCACCTCCATATAAGCGTCAT 1259
||||||||| | || | |||||| ||||| || |||||||| || || |||| |||
Sbjct 1159 AGAAATGGACTACCT-TGGTGCACAACGGTGTAATATTTCCACCACCTTACAAGCCTCAC 1217
Query 1260 GGGGTTAAGATATTGTTCCAGGGAAAGCCTGTTGACTTAACTCCTGAACAAGAAGAGGTT 1319
|| ||||||| |||| | |||| |||||||||||| ||||| |||||||||||||||||
Sbjct 1218 GGCATTAAGATTTTGTACAAGGGGAAGCCTGTTGACCTAACTACTGAACAAGAAGAGGTT 1277
Query 1320 GCAACTATGTTTGCGGTGATGAGGGAAACAGAATATTATAAAAAACC-AAAGTTCAGAGA 1378
|| ||||||||||| || ||||| || || || |||||||| ||||| || || || ||
Sbjct 1278 GCGACTATGTTTGCAGTAATGAGAGAGACGGATTATTATAATAAACCTCAA-TTTAGGGA 1336
Query 1379 GAATTTCTGGAATGATTGGCGGA-AACTACTTGGAAAGAACCATATGATTA-A-AAGTTT 1435
||||||||||||||| |||| || ||| ||||| | ||| ||| ||| || | ||| ||
Sbjct 1337 GAATTTCTGGAATGACTGGC-GAGCACTGCTTGGCAGGAAACATGTGA-TACAGAAG-TT 1393
Query 1436 AGATGATTGTGACTTCACTCCCATATATGAATGGTATATGCAGGAGAAGGAGACA-AAGA 1494
|||||||||||||| |||||||||||||| ||| || || | ||||| |||| | ||||
Sbjct 1394 GGATGATTGTGACTTTACTCCCATATATGAGTGGCATTTGGAAGAGAAAGAGA-AGAAGA 1452
Query 1495 AACAAATGA-CTGCAGAAGAG-AAAAGGATTGTGAAAGAGGAGAAATTAAAGCAGGAGGA 1552
||||||||| | |||| ||| |||| | || |||||||||||||| | ||||| |||||
Sbjct 1453 AACAAATGAGC-ACAGAGGAGAAAAAAGCTT-TGAAAGAGGAGAAACTGAAGCAAGAGGA 1510
Query 1553 GAAATATATGTGGGCTGTTCTTGATGGTGTCAGGGAGAGGATTGGAAATTTCAGAGTTGA 1612
||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||
Sbjct 1511 GAAATATATGTGGGCTGTTGTTGATGGTGTCAAAGAGAAGATTGGTAATTTCAGAGTTGA 1570
Query 1613 GCCCCCTGGGTTGTTTC-GAGGCCGGGGAGAACATCCCAAGATGGGGAAACTGAAA-AAG 1670
|| |||||| | |||| ||||||| |||||||||||||||||||| ||||| ||| |||
Sbjct 1571 ACCGCCTGGGCT-TTTCAGAGGCCGTGGAGAACATCCCAAGATGGGAAAACT-AAAGAAG 1628
Query 1671 CGGATTCGTCCTTGTGATATTACAATCAACATTGGTAAAGAG-GCGCCTATTCCAGAATG 1729
|| || ||||| || || || || | || || || |||| | || ||||||||||||||
Sbjct 1629 CGTATCCGTCCATGCGAGATCACCTTAAATATCGGGAAAG-GTGCTCCTATTCCAGAATG 1687
Query 1730 CCCTATCCCTGGTGAAAGATGGAAAGAAGTTAAGCATGACAATACTGTTACCTGGCTTGC 1789
|| ||| |||||||||||||||||||||| |||||||| || || ||||||||||| ||
Sbjct 1688 TCCAATCGCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAACACAGTTACCTGGCTAGC 1747
Query 1790 TTTTTGGAG-TGATCCTATCAATCCA-AAAGAGTTCAAGTATGTATTCTTGGCAGCTAGC 1847
||| ||| | ||||||||| || ||| ||||| |||||||||||||| |||||| |||||
Sbjct 1748 TTTCTGG-GTTGATCCTATTAA-CCAGAAAGAATTCAAGTATGTATTTTTGGCACCTAGC 1805
Query 1848 AGTTCGT-TG-AAGGGACAAAGCGACAAAGAGAAGTATGAGAAAGCGAGGAAGC-TACAT 1904
||| | | || ||||| | ||||||||||||||||| |||||||| ||||| | |||
Sbjct 1806 AGTGC-TATGAAAGGG-CTGAGCGACAAAGAGAAGTACGAGAAAGCTAGGAATCTTAC-G 1862
Query 1905 AACCATATAGGGAGTATTA-GAGCAGCATACACCAAAG-ATTTTAATAACAAGGATGTAA 1962
||||||||| | ||| | || || |||||||| ||| |||||| ||||||||| |
Sbjct 1863 GACCATATAGATAATATAAGGA-CAACATACACC-AAGAATTTTACCGCCAAGGATGTTA 1920
Query 1963 CAAAGCGGCAAATAGCAGTGGCAACATATCTCATCGATAAGCTAGCCCTTAGGGCTGGAA 2022
||| | |||||| || ||||| ||||||||||| ||||| | || |||||||||||||
Sbjct 1921 CAACGAAGCAAATTGCTGTGGCGACATATCTCATTGATAAATTGGCGCTTAGGGCTGGAA 1980
Query 2023 ATGAGAAGGATGACGATGAGGCAGATACTGTTGGTTGTTGTACATTGAAAGTAGGAAACG 2082
||||||||||||| |||||||| || ||||||||||||||||| || ||||| ||||| |
Sbjct 1981 ATGAGAAGGATGATGATGAGGCCGACACTGTTGGTTGTTGTACTTTAAAAGTTGGAAATG 2040
Query 2083 TGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGACTTCCTTGGTAAAGACTCTATTCAGT 2142
|||||||||||||||||||||| ||||||||||||| |||||||| || || || ||||
Sbjct 2041 TGGAGTGTATTCCTCCAAATAAAATAAAGTTTGACTTTCTTGGTAAGGATTCAATCCAGT 2100
Query 2143 ATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTATAAGGCAATTGGGCAGTTCCAAGCAG 2202
|||| ||||||||||||||||||||||| || || ||||| ||||| |||||||| || |
Sbjct 2101 ATGTGAACACAGTTGAGGTTGAGCCTCTTGTTTACAAGGCCATTGGACAGTTCCAGGCGG 2160
Query 2203 GAAAATCGAAAACCGATGATCTCTTTGATGAGCTAGATACTTCAAAACTCAATACTCATC 2262
||||||| ||||| |||||||| ||||||||| | || || ||||| ||| ||||||
Sbjct 2161 GAAAATCCAAAACAGATGATCTTTTTGATGAGTTGGACACAAGTAAACTGAATGCTCATC 2220
Query 2263 TTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGTATTCCGTACGTATAATGCATCCATCA 2322
| ||||| ||| || |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2221 TGAAGGAACTTGTGCCTGGTCTCACAGCCAAAGTATTCCGTACATATAATGCTTCCATCA 2280
Query 2323 CATTGGATTTAATGTTGAGTAAAGAAACCAGAGACGGTGACGTTCC-TGA-AAAAGTGGT 2380
| |||||| |||| ||||| ||||||||| ||| || || || | | |||| | ||
Sbjct 2281 CTTTGGATGAAATGCTGAGTCAAGAAACCAAAGATGGCGAT-TTAAATCAGAAAA-TAGT 2338
Query 2381 GGTTTATCAGCAAGCGAACAAGGAGGTTGCTATCATTTGTAACCATCAACGTACTGTCTC 2440
||||||||| |||| |||||||||||||| || || ||||| ||||| |||||||| ||
Sbjct 2339 AGTTTATCAGAAAGCAAACAAGGAGGTTGCCATAATCTGTAATCATCAGCGTACTGTATC 2398
Query 2441 GAAA-TCTCACGGAGCACAAGTGGAGAAGCTGGCTGTGAAAATAGAAGAACT-AAGGGAG 2498
||| || || || || ||| | || || || ||| || |||||||||||| |||| ||
Sbjct 2399 -AAAGTCACATGGTGCGCAAATTGAAAAATTGACTGCGAGAATAGAAGAACTCAAGG-AG 2456
Query 2499 CAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAAGAAAGG-AAGAAC-ACCGTT-- 2554
| |||||||| || | | |||| ||| ||||||| ||||| || ||| ||| ||
Sbjct 2457 GGTCTTAAAGAGCTCAAAACTAATCTTGACCGGGCTAA-AAAGGGAA-AACCACCATTGG 2514
Query 2555 AATGGGATCTGATGGAAAGA-GAA-AGAGGAACTTA-ACACCTGAA-GCATTGGAGAAGA 2610
|| || ||||||||||||| || ||| | |||| | ||| || || | ||||||||
Sbjct 2515 AA-GGT-TCTGATGGAAAGAAGATTAGAAG--CTTAGA-ACCA-AACGCGTGGGAGAAGA 2568
Query 2611 AGATAATGCA-AAC-GCAAG-G-TAAGATCGAGAAGATGGAAAGAGATATGCAAACAAAA 2666
|||| ||| ||| | | | | |||||||||||| |||||| |||| ||||| ||||||
Sbjct 2569 AGAT--TGCTCAACAG-A-GTGCTAAGATCGAGAAAATGGAACGAGACATGCATACAAAA 2624
Query 2667 GAAGA-TATGAAAACTGTCGCATTGGGCACATCTAAGATCAACTACATGGATCCTAGGAT 2725
|| || | ||||||| || ||| | ||||||||||||||||| ||| |||||||||| ||
Sbjct 2625 GAGGACT-TGAAAACCGTGGCACTAGGCACATCTAAGATCAATTACCTGGATCCTAGAAT 2683
Query 2726 CACTGTTGCGTGGTGCAAACGACATGATGTCCCCATTGAGAAGATATTTAACAAGTCTCT 2785
||| ||||| ||||||||||| ||||| || || || || |||||||| | |||||||||
Sbjct 2684 CACGGTTGCATGGTGCAAACGTCATGAAGTACCAATCGAAAAGATATTCACCAAGTCTCT 2743
Query 2786 TCTGGCTAAGTTCGCTTGGGCAATGGATGTTGATCCTGAGTT-CAGATTCT 2835
| ||| || || || |||||||||||||| || || || || ||||||||
Sbjct 2744 TTTGGAGAAATTTGCGTGGGCAATGGATGTAGAACCCGA-TTACAGATTCT 2793
> Ahg329014 jgi|Araly1|329014|fgenesh1_pm.C_scaffold_7001241
Length=2358
Score = 1053 bits (570), Expect = 0.0
Identities = 1371/1747 (78%), Gaps = 98/1747 (6%)
Strand=Plus/Plus
Query 1126 AAAAGCCCAACAAATG-GGTGAAAGATTCTAAATATT-CGAA-ATCTTCTAAATCATTAC 1182
||||| |||| ||| | | |||| || ||||| | || | || | ||| ||| | ||||
Sbjct 671 AAAAGTCCAAGAAA-GTGATGAACGAATCTAAGT-TTGCTAAGA-GTTCAAAAACCTTAC 727
Query 1183 CTTCTGGAGATGGGCAAAAGAAATGGA-AAACTCT-ACAGCACAATGGTGTTATTTTTCC 1240
|| |||| ||||| |||||||||||| || || | | ||||||||||| | ||||||
Sbjct 728 CTACTGGCGATGGTAAAAAGAAATGGACAACCT-TGGTA-CACAATGGTGTCACTTTTCC 785
Query 1241 ACCTCCATATAAGCGTCATGGGGTTAAGATATTGT-TCCAGGGAAAGCCTGTTGACTTAA 1299
|||||||||||| | |||||||||| |||| || | | |||| || || || |||||
Sbjct 786 ACCTCCATATAAACCTCATGGGGTTCAGATTTTATAT-AAGGGGAATCCAGTCAACTTAT 844
Query 1300 CTCCTGAACAAGAAGAGGTTGCAACTATGTTTGCGGTGATGAGGGAAACAGAATATTATA 1359
||||||| ||||||||||||||||| |||||||| |||||||| || ||||| | |||||
Sbjct 845 CTCCTGACCAAGAAGAGGTTGCAACGATGTTTGCTGTGATGAGAGAGACAGACTTTTATA 904
Query 1360 AAAAACCAAAG-TTCAGAGAGAATTTCTGGAATGATTGGCGGAAACTACTTGGAAAGAAC 1418
| ||||| | || || || |||||||||||||||||||| ||||||||||| |||||
Sbjct 905 ATAAACC-TCGATTTAGGGAAAATTTCTGGAATGATTGGCGAAAACTACTTGGCAAGAAT 963
Query 1419 CATATGATTA-A-AAGTTTAGATGATTGTGACTTCACTCCCATATATGAATGGTATATGC 1476
||| ||| || | ||| | |||||||||||||| || || |||||||| ||| || ||
Sbjct 964 CATGTGA-TACAGAAG-CTGGATGATTGTGACTTTACACCAATATATGATTGGCATTTG- 1020
Query 1477 AGGAGAAGGAGACA-AAGAAACAAATGACTGCAGAAGAGAAAAGGATTGTGAAAGAGGAG 1535
| |||| ||| | |||||| ||| | || | | || | || ||| | |
Sbjct 1021 -GAAGAA-AAGA-AGAAGAAA-AAA-G-CTTC-G-CCAG---A-GA-----AAA-ACCCG 1062
Query 1536 AAATTAAAGCAGGAGGAGAAATATATGTGGGCTGTTCTTGATGGTGTCAGGGAG-AGGAT 1594
||| |||| |||||||||||||||||||||| | || ||||||| ||| ||| |
Sbjct 1063 -----AAA-CAGGGGGAGAAATATATGTGGGCTGTTGTGGACGGTGTCAAAGAGAAGG-T 1115
Query 1595 TGGAAATTTCAGAGTTGAGCC-CCCTGGGTTGTTTCGAGGCCGGGGAGAACATCCCAAGA 1653
||| |||||||| || || || ||| ||| | || ||||| || ||||||||||||||||
Sbjct 1116 TGGGAATTTCAGTGTAGAACCTCCC-GGGCTATTCCGAGGTCGAGGAGAACATCCCAAGA 1174
Query 1654 TGGGGAAACTGAAAAAGCGGAT-TCGTCCTTGTGATATTACAATCAACATTGGTAAAGAG 1712
| || ||| |||||| ||| || | |||| |||| || || | || || || |||||
Sbjct 1175 TAGGAAAATTGAAAAGGCGTATAT-ATCCTAGTGACATCACTCTAAATATCGGGAAAGAT 1233
Query 1713 GCGCCTATTCCAGAATG-CCCTATCCCTGGTGAAAGATGGAAAGAAGTTAAGCATGACAA 1771
|| ||||| || ||||| ||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1234 GCTCCTATACCTGAATGTCCC-ATCCCTGGTGAAAGATGGAAAGAAGTAAAGCATGATAA 1292
Query 1772 TACTGTTACCTGGCTTGCTTTTTGGAGTGATCCTA-TCAATCCAAAAGA-G-TTCAAGTA 1828
|| || | |||||| ||| | |||| ||||||| || | || || | | ||||||
Sbjct 1293 CACAGTCATCTGGCTAGCTATCTGGAAAGATCCTATTC-A-CC-CGGGACGCTACAAGTA 1349
Query 1829 TGTATTCT-TGGCAGCTAGCAGTTCGTTGAAGGGACAAAGCGACAAAG-AGAAGTATGAG 1886
||| |||| || ||||||||||||| ||| || ||||||||| ||| |||||||||||
Sbjct 1350 TGT-TTCTCTGTCAGCTAGCAGTTCACAGAAAGGTCAAAGCGAC-AAGAAGAAGTATGAG 1407
Query 1887 AAAGCGAGGAAGC-TACATAACCATATAGGGAGTATTAGAGCAGCATACACCAAAG-ATT 1944
||||| ||||| | || | |||| |||| | ||| |||||| | |||||| ||| |||
Sbjct 1408 AAAGCCAGGAATCTTA-AGGACCACATAGAAAATATAAGAGCAACGTACACC-AAGAATT 1465
Query 1945 TTAATAACAAGGATGTAACAAAGCGGCAAATAGCAGTGGCAACATATCTCATCGATAAGC 2004
||| | ||||||||| |||| || |||||||| ||||| || |||||||| |||||
Sbjct 1466 TTACTGCCAAGGATGTTTCAAATCGACAAATAGCTGTGGCTACCTATCTCATTGATAAAT 1525
Query 2005 TAGCCCTTAGGGCTGGAAATGAGAAGGATGACGATGAGGCAGATACTGTTGGTTGTTGTA 2064
| || ||||| |||||||||||||||||||| |||||||| || || |||||||| ||||
Sbjct 1526 TGGCACTTAGAGCTGGAAATGAGAAGGATGATGATGAGGCGGACACAGTTGGTTGCTGTA 1585
Query 2065 CATTGAAAGTAGGAAACGTGGAGTGTATTCCTCCAAATAAGTTAAAGTTTGACTTCCTTG 2124
|||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1586 CATTAAAAGTAGGAAATGTGGAGTGTGTTCCTCCAAATAAGCTAAAGTTTGACTTCCTTG 1645
Query 2125 GTAAAGACTCTATTCAGTATGTAAACACAGTTGAGGTTGAGCCTCTGGTGTATAAGGCAA 2184
||||||| || || || ||||| || || || || ||||| ||||| || || || || |
Sbjct 1646 GTAAAGATTCAATCCAATATGTGAATACCGTCGAAGTTGAACCTCTTGTTTACAAAGCCA 1705
Query 2185 TTGGGCAGTTCCAAGCAGGAAAATCGAAA-ACCGATGATCTCTTTGATGAGCTAGATAC- 2242
||| ||||||| || || ||||| ||| | || ||||| ||||||||| |||| ||
Sbjct 1706 TTGCACAGTTCCGGGCTGGTAAATC-AAATTCAGACGATCTTTTTGATGAGTTAGACACA 1764
Query 2243 TTCAAAACTCAATACTCATCTTAAGGAGCTTATGGCTGGTCTCACAGCCAAAGTATTCCG 2302
| ||||| ||| ||||||||||||||||| | |||| |||||||| |||||||||||
Sbjct 1765 AGC-AAACTGAATGCTCATCTTAAGGAGCTTGTAACTGGCCTCACAGCTAAAGTATTCCG 1823
Query 2303 TACGTATAATGCATCCATCACATTGGATTTAATGTTGAGTAAAGAAACCAGAGACGGTGA 2362
||| || |||||||||||||| ||||| |||||||||| ||||||||||||| |||||
Sbjct 1824 TACTTACAATGCATCCATCACGCTGGATGTAATGTTGAGGCAAGAAACCAGAGAGGGTGA 1883
Query 2363 CGTTCCTGAAAAAGTGGTGGTTTATCAGCAAGCGAACAAGGAGGTTGC-TATCATTTGTA 2421
||| | ||||| || |||||||||||||| ||||||||||| || | | |||||||
Sbjct 1884 TGTTAAACAGAAAGTAGTAGTTTATCAGCAAGCAAACAAGGAGGTAGCGT-TAATTTGTA 1942
Query 2422 ACCATCAACGTACTGTCTCGAAA-TCTCACGGAGCACAAGTGGAGAAG-CTGGCTGTG-A 2478
| || || ||||| || || ||| |||||||| |||||| | || || |||||| | |
Sbjct 1943 ATCACCAGCGTACCGTTTC-AAAGTCTCACGGTGCACAAATCCAG-AGATTGGCTG-GAA 1999
Query 2479 AAATAGAAGAACT-AAGGGAGCAAATAAAAGAGCTGAATATTGATCTCGACAGGGCTAAG 2537
||||||||||||| || |||| | ||||| || || | || | || ||||||||
Sbjct 2000 AAATAGAAGAACTCAA-GGAGGGTCTTAAAGAACTCAAAAACAATTTGGAGAGGGCTAA- 2057
Query 2538 AAA-GGAAGAA-CACCGTT--AATGGGATCTGATGGAAAGAGAAA-GAGGAACTTAACAC 2592
||| |||| || | || || || || || |||||||||| ||| || ||| |||| |
Sbjct 2058 AAAGGGAA-AATCTCCATTGGAA--GGTTCAGATGGAAAGA-AAACAAGAAACATAACTC 2113
Query 2593 CTGAAGCATTGGAGAAGAAGATAATGC-AAAC-GCAAGGT-AAGATCGAGAAGATGGAAA 2649
| ||||| | |||||||||||| | || ||| | ||| | ||||| ||||||||||||
Sbjct 2114 CAGAAGCGTGGGAGAAGAAGAT-A-GCTCAACAG-AAGATGAAGATAGAGAAGATGGAAG 2170
Query 2650 GAGATATGCAAACAAAAGAAGA-TATGAAAACTGTCGCATTGGGCACATCTAAGATCAAC 2708
|||| ||||| ||||| || || | ||||||| || || ||||||| ||||||||||||
Sbjct 2171 GAGACATGCAGACAAAGGAGGACT-TGAAAACCGTGGCGCTGGGCACGTCTAAGATCAAC 2229
Query 2709 TACATGGATCCTAGGATCACTGTTGCGTGGTGCAAACGACATGATGTCCCCATTGAGAAG 2768
|||||||||||||||||||| || |||||||||||||| ||||| || |||||||| |||
Sbjct 2230 TACATGGATCCTAGGATCACGGTCGCGTGGTGCAAACGCCATGAAGTACCCATTGAAAAG 2289
Query 2769 ATATTTAACAAGTCTCTTCTGGCTAAGTTCGCTTGGGCAATGGATGTTGATCCTGAGTTC 2828
||||| ||||||||||| |||| || || || ||||||||||| || || ||| | |||
Sbjct 2290 ATATTCAACAAGTCTCTGCTGGAGAAATTTGCGTGGGCAATGGACGTAGAACCTCACTTC 2349
Query 2829 AGATTCT 2835
| |||||
Sbjct 2350 ACATTCT 2356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115870525290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5