BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55320.1 Length=1020 Score E Sequences producing significant alignments: (Bits) Value Ahg495617 jgi|Araly1|495617|fgenesh2_kg.8__1433__AT5G55320.1 743 0.0 > Ahg495617 jgi|Araly1|495617|fgenesh2_kg.8__1433__AT5G55320.1 Length=492 Score = 743 bits (402), Expect = 0.0 Identities = 463/493 (94%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 529 CCACATTTTCACGAACCATACTTAGCCACATCTCTTCAAGACTTTTGGGGTCGCAGGTGG 588 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 CCACATTTTTACGAACCATACTTAGCCACATCTCTTCAAGACTTTTGGGGTCGCCGGTGG 60 Query 589 AACCTCATAGTCTCGGCAAGTCTTCGGGCAATCGTCTACACTCCTGTGCGGCGTGTCTGC 648 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct 61 AACCTCATAGTCTCGGCGAGTCTTCGGGCAATCGTCTACACTCCTGTGCGGCATGTCTGC 120 Query 649 CAACGAGTAATGAGCTCTGATTATGCAATGTTGATTGGTGTTTTTGCGACGTTTGTAACC 708 ||| | |||||||||||| |||||||||||||||||||| |||||| |||||||||| | Sbjct 121 CAAGGCGTAATGAGCTCTAATTATGCAATGTTGATTGGTATTTTTGTGACGTTTGTAGTC 180 Query 709 TCTGGTGTGGCTCATGAAGTGGTTTTCTTTTATATAACCCGTGCGATGCCTACAGGGGAA 768 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 181 TCTGGTGTGGCTCATGAAGTGGTTTTCTTTTATATAACCCGTGAGATGCCTACAGGGGAA 240 Query 769 GTCGCTTTATTCTTTCTCTTACATGGAGTTTGCACGGTGGCGGAAGTGGCAGCGAAGAGG 828 |||||||| |||||| | |||||||||||||||||||||||||||||||| | ||||||| Sbjct 241 GTCGCTTTGTTCTTTGTGTTACATGGAGTTTGCACGGTGGCGGAAGTGGCTGTGAAGAGG 300 Query 829 ACGGCGTTTGTACGGAGGTGGCCGGTGAGACCAGTCGTATCTTGGATGTTCACGATAGCG 888 |||||||||||||||||||||||||||||||||| |||||||||| || ||||||| | | Sbjct 301 ACGGCGTTTGTACGGAGGTGGCCGGTGAGACCAGCCGTATCTTGGCTGCTCACGATGGGG 360 Query 889 TTTGTAAATGTGACCGCTGGTTGGCTGTTTTTTCCTCAGTTGATTCGGAACAACCTGGGG 948 |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | Sbjct 361 TTTGTAAATGTGACCGCTGGTTGGCTGTTTTTTCCTCAGTTGATACGGAGCAACCTGATG 420 Query 949 GAGAGATGCTCCAATGAAATCTCCTTGCTCATTGATTTCTTCAGAA-GCAAGTTATTTTA 1007 ||||||||||||||||||||||||||||||||||||||||||| || |||||||| || | Sbjct 421 GAGAGATGCTCCAATGAAATCTCCTTGCTCATTGATTTCTTCA-AACGCAAGTTAGTTGA 479 Query 1008 TTTTCCCCAGTGA 1020 ||||||||||||| Sbjct 480 TTTTCCCCAGTGA 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37932302415 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5