BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55320.1
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495617 jgi|Araly1|495617|fgenesh2_kg.8__1433__AT5G55320.1 743 0.0
> Ahg495617 jgi|Araly1|495617|fgenesh2_kg.8__1433__AT5G55320.1
Length=492
Score = 743 bits (402), Expect = 0.0
Identities = 463/493 (94%), Gaps = 2/493 (0%)
Strand=Plus/Plus
Query 529 CCACATTTTCACGAACCATACTTAGCCACATCTCTTCAAGACTTTTGGGGTCGCAGGTGG 588
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 CCACATTTTTACGAACCATACTTAGCCACATCTCTTCAAGACTTTTGGGGTCGCCGGTGG 60
Query 589 AACCTCATAGTCTCGGCAAGTCTTCGGGCAATCGTCTACACTCCTGTGCGGCGTGTCTGC 648
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 AACCTCATAGTCTCGGCGAGTCTTCGGGCAATCGTCTACACTCCTGTGCGGCATGTCTGC 120
Query 649 CAACGAGTAATGAGCTCTGATTATGCAATGTTGATTGGTGTTTTTGCGACGTTTGTAACC 708
||| | |||||||||||| |||||||||||||||||||| |||||| |||||||||| |
Sbjct 121 CAAGGCGTAATGAGCTCTAATTATGCAATGTTGATTGGTATTTTTGTGACGTTTGTAGTC 180
Query 709 TCTGGTGTGGCTCATGAAGTGGTTTTCTTTTATATAACCCGTGCGATGCCTACAGGGGAA 768
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 TCTGGTGTGGCTCATGAAGTGGTTTTCTTTTATATAACCCGTGAGATGCCTACAGGGGAA 240
Query 769 GTCGCTTTATTCTTTCTCTTACATGGAGTTTGCACGGTGGCGGAAGTGGCAGCGAAGAGG 828
|||||||| |||||| | |||||||||||||||||||||||||||||||| | |||||||
Sbjct 241 GTCGCTTTGTTCTTTGTGTTACATGGAGTTTGCACGGTGGCGGAAGTGGCTGTGAAGAGG 300
Query 829 ACGGCGTTTGTACGGAGGTGGCCGGTGAGACCAGTCGTATCTTGGATGTTCACGATAGCG 888
|||||||||||||||||||||||||||||||||| |||||||||| || ||||||| | |
Sbjct 301 ACGGCGTTTGTACGGAGGTGGCCGGTGAGACCAGCCGTATCTTGGCTGCTCACGATGGGG 360
Query 889 TTTGTAAATGTGACCGCTGGTTGGCTGTTTTTTCCTCAGTTGATTCGGAACAACCTGGGG 948
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 361 TTTGTAAATGTGACCGCTGGTTGGCTGTTTTTTCCTCAGTTGATACGGAGCAACCTGATG 420
Query 949 GAGAGATGCTCCAATGAAATCTCCTTGCTCATTGATTTCTTCAGAA-GCAAGTTATTTTA 1007
||||||||||||||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 421 GAGAGATGCTCCAATGAAATCTCCTTGCTCATTGATTTCTTCA-AACGCAAGTTAGTTGA 479
Query 1008 TTTTCCCCAGTGA 1020
|||||||||||||
Sbjct 480 TTTTCCCCAGTGA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37932302415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5