BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55330.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495618 jgi|Araly1|495618|fgenesh2_kg.8__1434__AT5G55330.1 756 0.0
Ahg495620 jgi|Araly1|495620|fgenesh2_kg.8__1436__AT5G55350.1 453 1e-126
> Ahg495618 jgi|Araly1|495618|fgenesh2_kg.8__1434__AT5G55330.1
Length=1011
Score = 756 bits (409), Expect = 0.0
Identities = 488/527 (93%), Gaps = 2/527 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAACTCAAGTTATTCATCCAAGTATGGGTTTCTGCAATCATTTCAGTAACT 60
||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGGAAGAACTCAATTTATTCATCGAAGTATGGGTTTCTGCAATCATCTCAGTAACT 60
Query 61 TATTGTTACTACTTAACACCCAAAATCAAAACCAGTCTTCTTCGATTACTATCTGTTCTT 120
||||||||||||||| ||| ||||||||||||||| | ||||||||||| | |||||||
Sbjct 61 TATTGTTACTACTTACCACTGAAAATCAAAACCAGTGTACTTCGATTACTTTATGTTCTT 120
Query 121 CCTGTTTGTGTTTTGTTTCTTATTATTCCTATCTTTTTCTCCACTGTTCATTCCTCTTTC 180
|||||||||| |||||||||| | ||||||| ||||||||||||||||||| |||||||
Sbjct 121 CCTGTTTGTGCTTTGTTTCTTGCTCTTCCTATGTTTTTCTCCACTGTTCATTTCTCTTTC 180
Query 181 ACTATTGCATTTTTCCTCTCAGGTCTTGCAGTTCCAAAACTCATCCTCTTTGCATTAGAA 240
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTATAGCCTTTTTCCTCTCAGGTCTTGCAGTTCCAAAACTCATCCTCTTTGCATTAGAA 240
Query 241 AAAGGTCCTCTTTTTCCACTTCCTCCTAATCTCCCTCATTTCGTCTGCTTTGCTTGCTTC 300
||||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||||||
Sbjct 241 AAAGGTCCTCTTTTTCCACTTCCTCATAATCTCCTTCAATTCATCTGCTTTGCTTGCTTC 300
Query 301 CCCATCAAGCTTCaaaaaaaaCCTAACCCTGAAAATACTAACCATTTCCCCAAATGGGTT 360
|||||||| |||||| ||| |||||||||| |||| |||||||||||||||||||||||
Sbjct 301 CCCATCAATTTTCAAATAAACCCTAACCCTGGAAATCCTAACCATTTCCCCAAATGGGTT 360
Query 361 TTTGCCCTGAAAGTTTTCATCTTTGGTGCCTTGTTACTACAAGCGTATCATTACAAACAA 420
|||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct 361 TTTGCCCTTAAAGTTTTAATCTTTGGTGCCTTGTTACTACAAGTGTATGATTACAAACAA 420
Query 421 TTTCTATC-TACGAATTTTCTATTGGGTCTCTATGCTCTGCATATATACTTGGAGCTTGA 479
||||| || | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 TTTCT-TCCTCCGAATTTTCTATTGGGTCTCTATGCTCTGCATATATACTTAGAGCTTGA 479
Query 480 GATTTCCTTAACCTTGATAAAATTTCTCGTCAGTATCACTCTTGGGT 526
||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 480 GATTTCCTTGACCTTGATAAAATTTCTCGTCAGTATAACTCTAGGGT 526
Score = 749 bits (405), Expect = 0.0
Identities = 453/476 (95%), Gaps = 3/476 (1%)
Strand=Plus/Plus
Query 563 CCACCTCTCTACATGACTTCTGGGGTCACCGATGGAACCTCATGGTCTCGAAGATTCTCT 622
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 527 CCACCTCTCTATATGACTTCTGGGGTCACCGATGGAACCTCATGGTCTCGAAGATTCTTT 586
Query 623 GGCTCGCAGTGTACAACCCCATACGGCAATGGCGAGCCAAGAGCTCCGAGTGGGATCGGT 682
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 587 GGCTCGCAGTGTACCTCCCCATACGGAAATGGCGAGCCAAGAGCTCCGAGTGGGATAGGT 646
Query 683 TCTTCGCGATTTTCGCCACGTTCCTCGTCTCTGGTGTGGCTCACGAGATTCTCTACTTCT 742
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 647 TCTTCGCGATTTTCGCCACGTTCCTCGTCTCTGGTGTGGCTCACGAGATTCTCTACTTTT 706
Query 743 ATTTGACACGTGAGAAGCCTACATGGGAGGTGACTTGGTTCTTTGTGTTACATGGGTTTT 802
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 707 ATTTGACACGTGAGAAGCCTACATGGGAGGTGACTTGGTTCTTTGTGTTACACGGGCTTT 766
Query 803 GCATGGCGGCTGAAGTGGCACTGAAGAGGAAGACGAAGTTGGTGCAGCGGTGGCCGGTGA 862
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 767 GCATGGCGGCTGAAGTGGCAGTGAAGAGGAAGACGAAGTTGGTGCAGCGGTGGCAGGTGA 826
Query 863 ATCCGGCAGTGTCGAGACTGCTTACGGTGGGGTTTGTGTTTGTGACTGGTGTTTGGCTAT 922
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 ATCCGGCGGTGTCTAGACTGCTTACGGTGGGGTTTGTGTTTGTGACTGGTGTTTGGCTAT 886
Query 923 TTTCCCCCCAGCCTATTAGGCACGGCTTGATGGAGAGGTTCATCA--A-TGAAGACTTGT 979
||||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct 887 TTTCCCCTCAGCCTATTAGGCACGGCTTGATGGAGAGATTCATCATCAATGAAGACTTGT 946
Query 980 TTCTAATTGATTTCTTTAATCGTAAGTTATATATCCTCTTAGGGTTGTTTACGAGT 1035
|| ||||||||||||||||||| ||||||| ||| || ||||||||||||||||||
Sbjct 947 TTTTAATTGATTTCTTTAATCGCAAGTTATTTATTCTGTTAGGGTTGTTTACGAGT 1002
> Ahg495620 jgi|Araly1|495620|fgenesh2_kg.8__1436__AT5G55350.1
Length=1038
Score = 453 bits (245), Expect = 1e-126
Identities = 764/1001 (76%), Gaps = 90/1001 (9%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAACTCAAGTTATTCATCCAAGTATGGGTTTCTGCAATC-AT-TTCAGTAA 58
|||||||||||||||| | || ||| |||||||||||| ||||| | || | || ||
Sbjct 1 ATGGAGGAAGAACTCATGAGCTTAATCAAAGTATGGGTTTATGCAA-CAATCTCCA-TAT 58
Query 59 CTTATTGTTACTACTTAACACCCAA-AATCAAAACCAGTCTTCTTCGATTACTATCTGTT 117
|||||||||||||| || || ||| ||||||| | || || |||||||||| ||||||
Sbjct 59 CTTATTGTTACTACATATCA-ACAAGAATCAAAGCTGGTGTTTTTCGATTACTCTCTGTT 117
Query 118 CTTCCTGTTTGTGTTTTGTTTCTTATTATTCCTATCTTT-TTCTCCACTGTTCA--TTCC 174
|||||||||||||| |||||||| || ||||| | ||| || ||| ||||||| || |
Sbjct 118 CTTCCTGTTTGTGTCCTGTTTCTTGTTCTTCCTCTGTTTGTT-TCCTCTGTTCACTTTTC 176
Query 175 T-CTTTCACTATTGCATTTTTCCTCTCA-GGTCTTG-CAGTTCCAAAACTCATCCTCTT- 230
| | ||| | |||||||||||| || || |||| || || | |||||||| |||||
Sbjct 177 TGGGTCCAC-A--GCATTTTTCCTCGCATGG-CTTGCCAATTTC-AAACTCATACTCTTC 231
Query 231 TGCATTAGAAAAAGGTCCTCTTTTTCCACTTCCTCCTAATCTC-CCTC-ATTTCGTCTGC 288
| | || || ||||||||||||| |||||||| ||||||||| || | | || |||||
Sbjct 232 T-CCTTCGACCAAGGTCCTCTTTTCCCACTTCCCCCTAATCTCTCC-CGA-CTCATCTGC 288
Query 289 TTTGCTTGCTTCCCCATCAAGCTTCaaaaaaaaCCTAACCCTGAAAATACTAACCATTTC 348
|| ||||||||||||||||||||||| |||| ||||| ||| ||||| | | | ||
Sbjct 289 TTCACTTGCTTCCCCATCAAGCTTCAACAAAACCCTAAACCTCAAAAT-C--A--A-TTG 342
Query 349 CCCAAATGGGTTTTTGCCCTGAAAGTTTTC-ATCTTTGGTGCCTTGTTACTACAAGCGTA 407
|| ||||||||||| ||| | ||| || | ||||||||| |||||| || | |||
Sbjct 343 CCTAAATGGGTTTTCGCCATTAAA-CTTGCTATCTTTGGTTTGTTGTTA-TA-TA-TGTA 398
Query 408 T-CATTACAAACAATTTCTATCTACGAATTTTCTATTGGGT-CTCTATGCTCTGCATATA 465
| || |||||||||| | | ||| ||| | | ||||| ||| |||||| |||||||||||
Sbjct 399 TGCA-TACAAACAATATATGTCTCCGACTGTGCTATT-GGTGCTCTATTCTCTGCATATA 456
Query 466 TACTTGGAGCT-TGAGATTTC-CTTAACCT-TGATAAAATTTCTCG-TCAGTATCACTCT 521
||||||||| | ||||| ||| ||| | || | ||| |||| | |||||||| ||||
Sbjct 457 TACTTGGAG-TATGAGA-TTCTCTT-AGCTCCCTTGAAAGTTCT-GCTCAGTATCTCTCT 512
Query 522 TGGGTGTGACCTCGAGCCACAATTCAACGAACCATACTTAGCCACCTCTCTACATGACTT 581
||| || ||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 513 TGGTTGCGACCTCGAGCCGCAGTTCAACGAACCATACTTAGCCACCTCTCTTCAAGACTT 572
Query 582 CTGGGGTCACCGATGGAACCTCATGGTCTCGAA-GATTCT-CTGGCTCG-CAGTGTACAA 638
|||||||| || |||||||||||||| || | |||||| | ||| || | || ||
Sbjct 573 CTGGGGTCGTCGGTGGAACCTCATGGT-TCCAGCGATTCTTC-GGC-CGGCTGTTTATGT 629
Query 639 CCCCAT-ACGGC-AATGGC-GAGCC--AAGA-G--CTCCGAGTG-GGATCGGTTCTTCGC 689
||| | | | | |||||| | | | || | | ||| || | || | |||||| |
Sbjct 630 CCCGGTGA-GACGAATGGCCG-GTCGGAAAATGAACTCTGA-TCAGGCTTTGTTCTTGG- 685
Query 690 GA-TTTTCGCCACGTTCCTCGTCTCTGGTGTGGCTCACGAGATTCTCTACTTCTA-TTTG 747
|| |||| || |||||||| ||||| ||||| | ||||||| | | | |||||| |||
Sbjct 686 GAGTTTTTGCGACGTTCCTTGTCTCCGGTGTCGTTCACGAGCTGATTTTCTTCTACTTT- 744
Query 748 ACACGTGAGAA-GCCTACATGG-GAGGTGACTTGGTTCTTTGT-GTTACATGG-GTTTTG 803
|||||||| | ||| ||| || || || |||| ||||||||| || |||||| |||| |
Sbjct 745 ACACGTGA-ATCGCCGACA-GGTGAAGTCACTTTGTTCTTTGTAGT-ACATGGAGTTT-G 800
Query 804 CA-TGGCGGCTGAAGTG-GCA-CTGAAGAGGAAGACGAAG-TTGGTGCAGCGGTGGCCGG 859
|| || || |||||| | || | |||||| || ||| | ||||||| ||||| | |
Sbjct 801 CACTGCCG-CTGAAG-GAGCTGC-GAAGAG-AA--CGA-GCTTGGTGCGGCGGTTGAAGA 853
Query 860 TGAATCCGGCAGTGTCGAGACTGCTTACGGTGGGGTTTGTGTTTGTGACTGGTGTTTGGC 919
||| || | || || ||||||| ||||||||||||||| ||||||| |||| ||||
Sbjct 854 TGAGTCAGATGGTTTCCCGACTGCTCACGGTGGGGTTTGTGGTTGTGACCGGTGGTTGGT 913
Query 920 TATTTTCCCCCCAGCCTATTAGGCAC-GGCTTGATGGAGAG 959
| |||| || |||| || ||| | ||| |||| |||||
Sbjct 914 TGTTTTTTCCTCAGCTTACAAGG-AGTGGCATGATCGAGAG 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5