BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G55340.1 Length=1155 Score E Sequences producing significant alignments: (Bits) Value Ahg495619 jgi|Araly1|495619|fgenesh2_kg.8__1435__AT5G55340.1 1548 0.0 Ahg473602 jgi|Araly1|473602|fgenesh2_kg.1__3556__AT1G34490.1 292 3e-78 Ahg495618 jgi|Araly1|495618|fgenesh2_kg.8__1434__AT5G55330.1 196 2e-49 > Ahg495619 jgi|Araly1|495619|fgenesh2_kg.8__1435__AT5G55340.1 Length=1057 Score = 1548 bits (838), Expect = 0.0 Identities = 988/1060 (93%), Gaps = 12/1060 (1%) Strand=Plus/Plus Query 1 ACAAACAAAGATCTGAGAGATGGATGAAGAACTCAAGAACTTGATCAAAGTATGGGTTTC 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 ACAAACAAAGATCTGAGAGATGGATGAAGAACTCAAGAACTTGATCAAAGTATGGTTTTC 60 Query 61 TGCAATAATCTCGATATCTTATTGTTACTACATACCACCTAGAATCAAATCTGGTGctcc 120 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 61 AGCAATAATCTCGATATCTTATTGTTACTACTTACCACCTAGAATCAAATCTGGTGTTCC 120 Query 121 tcgattcctctctgtttcccctgttcttgctctgtttcttgttcttcctctgtttttctc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCGATTCCTCTCTGTTTCCCCTGTTCTTGCTCTGTTTCTTGTTCTTCCTCTGTTTTTCTC 180 Query 181 ctctctgCATTTATCTTTAATCACAGCGTTTTTCCTCACATGGCTTGCTAATTTCAAACT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTCTCTGCATTTATCTTTAATCACAGCGTTTTTCCTCACATGGCTTGCTAATTTCAAACT 240 Query 241 CATCCTCTTCTCCTTCGATAAAGGTCCTTTAATCCCAATTCCAACAAATTTCCCTCGATT 300 |||||||||||||||||||||||||||||||||||||||||| || ||| || ||||||| Sbjct 241 CATCCTCTTCTCCTTCGATAAAGGTCCTTTAATCCCAATTCCGACCAATCTCTCTCGATT 300 Query 301 CTTCTGCTTCACTTGCTTCCCCATCAAGGTTCAGCAAAACCCTAAATCTCAAAACCATTT 360 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 301 CTTCTGCTTCACTTGCTTCCCCATCAATGTTCAGCAAAACCCTAAATCTCAAAACCATTT 360 Query 361 GCCCAAATTGGTTTTCGCCATTAAACTTGCAATCTTTGCAGTGCTATTACATTTGTATAG 420 ||| ||||||||||||||||||||| |||||||||||| ||| | |||||||||||| | Sbjct 361 GCCTAAATTGGTTTTCGCCATTAAAGTTGCAATCTTTGGTGTGTTGTTACATTTGTATGG 420 Query 421 CTACAGACAAAATCTGTCTCCGACTATACTATTAGGTCTCTATTTTGTGCATCTCTACTT 480 |||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| Sbjct 421 TTACAGACAAAATCTGTCTCCGACTGTACTACTAGGTCTCTATTTTGTGCATCTATACTT 480 Query 481 AGAGATTGAGATTATATTAACGTTTGTTAAAGTTGTTGTTTTTATCTCTCTTGGCTGCGA 540 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 481 AGAGATTGAGATTATTTTAACGTTCGTTAAAGTTGTTGTTTTTATCTCTCTTGGCTGCGA 540 Query 541 TCTTGAGCCACAGTCCAATAAACCGTACTTAGCCACATCTCTACAAGACTTCTGGGGTCG 600 |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 541 TCTTGAACCACAGTCCAATAAACCATACTTAGCCACATCTCTACAAGACTTTTGGGGTCG 600 Query 601 CCGGTGGAATCTCATGGTTCCGGCGATTCTCCGGCCAGCCGTTTACGCACCAATGCGGCG 660 ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| Sbjct 601 TCGGTGGAATCTTATGGTTCCGGCGATTCTCCGTCCAGCAGTTTACGCTCCAATGCGGCG 660 Query 661 AGTCTCTGAACGCAAAATGAGTTCCGGTTGGGCTCTGTTTCCGGGGATTTTGGCAGCGTT 720 ||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| Sbjct 661 AGTCTCTGAACGCAAAATGAGTTCCGGGTGGGCTCTGTTTCCGGGGATTTTAGCGGCGTT 720 Query 721 TATCGTCTCCGGTTTGGTTCACGAATTGCTCTTCTTCTATTTGATACGTGAGATGCCTAC 780 ||||| || ||||||||||| |||||||||||||||||| |||||||||||||||| || Sbjct 721 CATCGTATCTGGTTTGGTTCATGAATTGCTCTTCTTCTATATGATACGTGAGATGCCCAC 780 Query 781 AGGAGAAGTTACTCTGTTCTTTGTGTTACATGGCGTTTGTACTGCTG-TAGAATTGGCGG 839 ||||||||||||||||||||||||||||||||||| |||||||| | | |||||||||| Sbjct 781 TGGAGAAGTTACTCTGTTCTTTGTGTTACATGGCGTATGTACTGCGGCT-GAATTGGCGG 839 Query 840 TGAAGAAGAAAACGACGGT-A-GCACAGCGGTGGCGGTTGAGTCCGGGGGTGTCGCGGGT 897 | |||||||| || ||||| | ||| ||||||| |||| ||||||| ||| |||||| | Sbjct 840 TTAAGAAGAAGACAACGGTGATGCA--GCGGTGGAGGTTAAGTCCGGCGGTTTCGCGGCT 897 Query 898 TCTCACGGTGGGGTTTGTGTTTGTGACTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAG 957 | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 898 GATTACGGTGGGGTTTGTGTTTGTGAGTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAG 957 Query 958 GAGCGGGGTGATGGAGAGATTCACATCTGAAGCTGTGTTGCTCGTTGAGTTCATTAAGC- 1016 |||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |||||| Sbjct 958 GAGCGGCGTGATGGAGAGATTCACATATGAAGCTGTGTTGTTCGTTGAGTTCGTTAAGCA 1017 Query 1017 ---G--ATAAGTTATTTTATTTACGTTGTTGGGGATATTT 1051 | ||||||||||||| |||| ||||||||||||||| Sbjct 1018 CAAGTTATAAGTTATTTTAGTTACTTTGTTGGGGATATTT 1057 > Ahg473602 jgi|Araly1|473602|fgenesh2_kg.1__3556__AT1G34490.1 Length=1000 Score = 292 bits (158), Expect = 3e-78 Identities = 618/832 (74%), Gaps = 64/832 (8%) Strand=Plus/Plus Query 20 ATGGATGAAGAACTCAAGAACTT-GATCAAAGTATGGGTTTCTGCAATAATCTC-GATAT 77 ||||| ||||||||||||| ||| | |||||||||||||||||||||||||||| | | | Sbjct 1 ATGGAGGAAGAACTCAAGAGCTTCG-TCAAAGTATGGGTTTCTGCAATAATCTCTG-TGT 58 Query 78 CTTATTGTTACTACATACCACCTA-GAATCAAAT-CTGGTGctcctcgattcctctctgt 135 |||| |||||||| |||||| | | || ||||| | |||| || |||||| ||||| || Sbjct 59 CTTACTGTTACTATATACCATCGAAGA-TCAAAAGC-GGTGTTCATCGATTACTCTCGGT 116 Query 136 ttcccct-gttct-tgctctgtttcttgttcttcctctgtttttc-tcctct-ctgCATT 191 | | || || || || ||||||||||||||||||| ||| ||| || | | | | ||| Sbjct 117 T-CTTCTTGT-CTGTGTTCTGTTTCTTGTTCTTCCTTTGTGCTTCGTCTT-TAC-G-ATT 171 Query 192 TATCT-TTA-ATCACAGCGTTTTTCCTCACATGGCTTGCTAATTTCAAACTCATCCTCTT 249 | ||| || | ||| ||||||| |||| | | ||||||||||| || |||||||| || Sbjct 172 T-TCTCTTCCACCACTGCGTTTTGCCTCTCTTTACTTGCTAATTTTAAGCTCATCCTATT 230 Query 250 CT-CCTTCGATAAAGGTCCT-TTAATCCCAATTCCAACAAATTTCCCTC-GATTCTTCTG 306 | |||| || ||||||||| || | ||| |||| || ||| || || ||||| | || Sbjct 231 -TGCCTTTGACAAAGGTCCTCTTT-TACCACTTCCCACTAATCTCT-TCCGATTCATATG 287 Query 307 CTTCACTTGCTTCCCCATCAAGGTTCAGCAA-AACCCTAAATCTCAAAACCATTTGCCCA 365 ||| |||||||| ||||||||| |||| || |||||||| |||||||| ||| || | Sbjct 288 CTTTACTTGCTTGCCCATCAAGCTTCAA-AAGAACCCTAACTCTCAAAATCATCCACCTA 346 Query 366 AATTGGTTTTCGCCATTAAA-CTTGCAATCTTTGCAGTGCTATTACAT-TTGTATAGCTA 423 ||| ||||||| | |||| || ||||| |||| || | ||| | || ||| ||| Sbjct 347 AATGGGTTTTCTTTAGTAAAGCT-GCAATTTTTGGGGTTTTGTTAAACGTTC-ATAACTA 404 Query 424 CAGACAAAATCTGT--CT-CCGACTATACTATTAGGTCTCTATTTTGTGCATCTCTAC-T 479 | | || | ||| | || | | | ||| || |||||||| ||||||| ||| | Sbjct 405 TA-A-AAGTT-TGTTGCCACCAATTCTTCTAATATGTCTCTATCCAATGCATCTATACCT 461 Query 480 TAGAGATTGA-GATTATATTAACGTTTGTTAAAGTTGTTGTTTTT-ATC-TCTCTTGGCT 536 | | | |||| | || | ||||| | || || | | ||| || ||| | ||| || | Sbjct 462 T-GTGCTTGACG-TTCTTTTAACCATCGTCAACGCT-TTGCTTACCATCAT-TCTCGGGT 517 Query 537 GCGATCTTGAGCCACAGTCCAATAAACCGTACTTAGCCACATCTCTACAAGACTTCTGGG 596 |||| || |||||||| | ||| |||| ||||||||||| ||||| |||||||| |||| Sbjct 518 GCGACCTGGAGCCACATTTCAACGAACCATACTTAGCCACGTCTCTTCAAGACTTTTGGG 577 Query 597 GTCGCCGGTGGAATCTCATGGTTCCGGCGATTCTCCGGCCAGCCGTTTACGCAC-CAATG 655 ||||||| ||||| ||||| |||||||| ||| ||||||||| ||| ||| | | || Sbjct 578 GTCGCCGTTGGAACCTCATTGTTCCGGCTATTTTCCGGCCAGGCGTCTACTTTCTCG-TG 636 Query 656 CGG-CGAGTCT-CTGAACGCAAAATGAGTTCCGGTTGGGCTCTGTTTCC-GGGGAT-TTT 711 | || || | | ||| | ||||||| || | |||||| ||| | |||| | ||| Sbjct 637 AGTTCG-GTATGCC-AACACCAAATGAGGTCTGATTGGGCAAGGTT-CATGGGG-TGTTT 692 Query 712 GGCAGCGTT-TATCGTCTCCGGTTTGGTTCACGAATTGCTCTTCTTCTATTTGATAC-GT 769 | || | || | |||| || |||||| ||||||| || | | ||| || | | || || Sbjct 693 GACAACATTCT-TCGTTTCTGGTTTGATTCACGAGCTGGTATACTTTTACATAA-ACCGT 750 Query 770 GAGATGCCTACA-GGAGAAGTTACTCTG-TTCTTTGTGTTACATGGCGTTTG 819 |||| ||||| || ||||||||| || |||||||| |||||||| ||||| Sbjct 751 GAGACCCCTACTTGG-GAAGTTACT-TGGTTCTTTGTATTACATGGGGTTTG 800 > Ahg495618 jgi|Araly1|495618|fgenesh2_kg.8__1434__AT5G55330.1 Length=1011 Score = 196 bits (106), Expect = 2e-49 Identities = 361/478 (76%), Gaps = 41/478 (9%) Strand=Plus/Plus Query 573 CCACATCTCTACAAGACTTCTGGGGTCGCCGGTGGAATCTCATGGTTC-CGGCGATTCTC 631 |||| |||||| | ||||||||||||| ||| ||||| ||||||| || || |||||| Sbjct 527 CCACCTCTCTATATGACTTCTGGGGTCACCGATGGAACCTCATGG-TCTCGAAGATTCTT 585 Query 632 CGGC-CAGCCGTTTA-CGCACCAATGCGGCGAGTCTCTGAACGCAAAATGAGTTCCG-GT 688 ||| | || || || | | || || ||| | | | | | || || ||| |||| | Sbjct 586 TGGCTC-GCAGTGTACCTC-CCCATACGG-AAATGGC-G-A-GC-CAA-GAGCTCCGAG- 636 Query 689 TGGGCTCTGTT-TCCGGGGATTTT-GGCAGCGTTTATCGTCTCCGGTTTGGTTCACGA-A 745 |||| | ||| | | | |||||| | || |||| ||||||| ||| ||| |||||| | Sbjct 637 TGGGATAGGTTCTTC-GCGATTTTCGCCA-CGTTCCTCGTCTCTGGTGTGGCTCACGAGA 694 Query 746 TTGCTCTTCTTCTATTTGATACGTGAGATGCCTACA-GGAGAAGTTACTCT-GTTCTTTG 803 || |||| ||| ||||||| |||||||| ||||||| || || || ||| | |||||||| Sbjct 695 TT-CTCTACTTTTATTTGACACGTGAGAAGCCTACATGG-GAGGTGACT-TGGTTCTTTG 751 Query 804 TGTTACA-TGGCGTTTGTACT-GCTG-TAGAATTGGCGGTGAAGAAGAAAACGACGGTAG 860 ||||||| ||| |||| | | || | | ||| |||| ||||||| ||| |||| | | | Sbjct 752 TGTTACACGGGC-TTTGCA-TGGCGGCT-GAAGTGGCAGTGAAGAGGAAGACGAAGTTGG 808 Query 861 CACAGCGGTGGC-GGTTGAGTCCGGGGGTGTCGCGGGTTCTCACGGTGGGGTTTGTGTTT 919 |||||||||| || ||| ||||| |||||| | | || |||||||||||||||||| Sbjct 809 TGCAGCGGTGGCAGG-TGAATCCGGCGGTGTCTAGACTGCTTACGGTGGGGTTTGTGTTT 867 Query 920 GTGACTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAGG-AGCGGGGTGATGGAGAGATT 978 |||||||||| |||| | ||| | ||||||| || ||| | ||| ||||||||||||| Sbjct 868 GTGACTGGTGTTTGGCTATTTTCCCCTCAGCCTATTAGGCA-CGGCTTGATGGAGAGATT 926 Query 979 CA-CATC--TGAAG-CTGTGTTGCTCGTTGAGTTCATTAAGCGATAAGTTATTTTATT 1032 || |||| ||||| || |||| | |||| ||| |||| || ||||||||| ||| Sbjct 927 CATCATCAATGAAGACT-TGTTTTTAATTGATTTCTTTAATCGC-AAGTTATTT-ATT 981 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43078896210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5