BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55340.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495619 jgi|Araly1|495619|fgenesh2_kg.8__1435__AT5G55340.1 1548 0.0
Ahg473602 jgi|Araly1|473602|fgenesh2_kg.1__3556__AT1G34490.1 292 3e-78
Ahg495618 jgi|Araly1|495618|fgenesh2_kg.8__1434__AT5G55330.1 196 2e-49
> Ahg495619 jgi|Araly1|495619|fgenesh2_kg.8__1435__AT5G55340.1
Length=1057
Score = 1548 bits (838), Expect = 0.0
Identities = 988/1060 (93%), Gaps = 12/1060 (1%)
Strand=Plus/Plus
Query 1 ACAAACAAAGATCTGAGAGATGGATGAAGAACTCAAGAACTTGATCAAAGTATGGGTTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ACAAACAAAGATCTGAGAGATGGATGAAGAACTCAAGAACTTGATCAAAGTATGGTTTTC 60
Query 61 TGCAATAATCTCGATATCTTATTGTTACTACATACCACCTAGAATCAAATCTGGTGctcc 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 61 AGCAATAATCTCGATATCTTATTGTTACTACTTACCACCTAGAATCAAATCTGGTGTTCC 120
Query 121 tcgattcctctctgtttcccctgttcttgctctgtttcttgttcttcctctgtttttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGATTCCTCTCTGTTTCCCCTGTTCTTGCTCTGTTTCTTGTTCTTCCTCTGTTTTTCTC 180
Query 181 ctctctgCATTTATCTTTAATCACAGCGTTTTTCCTCACATGGCTTGCTAATTTCAAACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCTCTGCATTTATCTTTAATCACAGCGTTTTTCCTCACATGGCTTGCTAATTTCAAACT 240
Query 241 CATCCTCTTCTCCTTCGATAAAGGTCCTTTAATCCCAATTCCAACAAATTTCCCTCGATT 300
|||||||||||||||||||||||||||||||||||||||||| || ||| || |||||||
Sbjct 241 CATCCTCTTCTCCTTCGATAAAGGTCCTTTAATCCCAATTCCGACCAATCTCTCTCGATT 300
Query 301 CTTCTGCTTCACTTGCTTCCCCATCAAGGTTCAGCAAAACCCTAAATCTCAAAACCATTT 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 CTTCTGCTTCACTTGCTTCCCCATCAATGTTCAGCAAAACCCTAAATCTCAAAACCATTT 360
Query 361 GCCCAAATTGGTTTTCGCCATTAAACTTGCAATCTTTGCAGTGCTATTACATTTGTATAG 420
||| ||||||||||||||||||||| |||||||||||| ||| | |||||||||||| |
Sbjct 361 GCCTAAATTGGTTTTCGCCATTAAAGTTGCAATCTTTGGTGTGTTGTTACATTTGTATGG 420
Query 421 CTACAGACAAAATCTGTCTCCGACTATACTATTAGGTCTCTATTTTGTGCATCTCTACTT 480
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 421 TTACAGACAAAATCTGTCTCCGACTGTACTACTAGGTCTCTATTTTGTGCATCTATACTT 480
Query 481 AGAGATTGAGATTATATTAACGTTTGTTAAAGTTGTTGTTTTTATCTCTCTTGGCTGCGA 540
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 481 AGAGATTGAGATTATTTTAACGTTCGTTAAAGTTGTTGTTTTTATCTCTCTTGGCTGCGA 540
Query 541 TCTTGAGCCACAGTCCAATAAACCGTACTTAGCCACATCTCTACAAGACTTCTGGGGTCG 600
|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 541 TCTTGAACCACAGTCCAATAAACCATACTTAGCCACATCTCTACAAGACTTTTGGGGTCG 600
Query 601 CCGGTGGAATCTCATGGTTCCGGCGATTCTCCGGCCAGCCGTTTACGCACCAATGCGGCG 660
||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 601 TCGGTGGAATCTTATGGTTCCGGCGATTCTCCGTCCAGCAGTTTACGCTCCAATGCGGCG 660
Query 661 AGTCTCTGAACGCAAAATGAGTTCCGGTTGGGCTCTGTTTCCGGGGATTTTGGCAGCGTT 720
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 661 AGTCTCTGAACGCAAAATGAGTTCCGGGTGGGCTCTGTTTCCGGGGATTTTAGCGGCGTT 720
Query 721 TATCGTCTCCGGTTTGGTTCACGAATTGCTCTTCTTCTATTTGATACGTGAGATGCCTAC 780
||||| || ||||||||||| |||||||||||||||||| |||||||||||||||| ||
Sbjct 721 CATCGTATCTGGTTTGGTTCATGAATTGCTCTTCTTCTATATGATACGTGAGATGCCCAC 780
Query 781 AGGAGAAGTTACTCTGTTCTTTGTGTTACATGGCGTTTGTACTGCTG-TAGAATTGGCGG 839
||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||||
Sbjct 781 TGGAGAAGTTACTCTGTTCTTTGTGTTACATGGCGTATGTACTGCGGCT-GAATTGGCGG 839
Query 840 TGAAGAAGAAAACGACGGT-A-GCACAGCGGTGGCGGTTGAGTCCGGGGGTGTCGCGGGT 897
| |||||||| || ||||| | ||| ||||||| |||| ||||||| ||| |||||| |
Sbjct 840 TTAAGAAGAAGACAACGGTGATGCA--GCGGTGGAGGTTAAGTCCGGCGGTTTCGCGGCT 897
Query 898 TCTCACGGTGGGGTTTGTGTTTGTGACTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAG 957
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 898 GATTACGGTGGGGTTTGTGTTTGTGAGTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAG 957
Query 958 GAGCGGGGTGATGGAGAGATTCACATCTGAAGCTGTGTTGCTCGTTGAGTTCATTAAGC- 1016
|||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 958 GAGCGGCGTGATGGAGAGATTCACATATGAAGCTGTGTTGTTCGTTGAGTTCGTTAAGCA 1017
Query 1017 ---G--ATAAGTTATTTTATTTACGTTGTTGGGGATATTT 1051
| ||||||||||||| |||| |||||||||||||||
Sbjct 1018 CAAGTTATAAGTTATTTTAGTTACTTTGTTGGGGATATTT 1057
> Ahg473602 jgi|Araly1|473602|fgenesh2_kg.1__3556__AT1G34490.1
Length=1000
Score = 292 bits (158), Expect = 3e-78
Identities = 618/832 (74%), Gaps = 64/832 (8%)
Strand=Plus/Plus
Query 20 ATGGATGAAGAACTCAAGAACTT-GATCAAAGTATGGGTTTCTGCAATAATCTC-GATAT 77
||||| ||||||||||||| ||| | |||||||||||||||||||||||||||| | | |
Sbjct 1 ATGGAGGAAGAACTCAAGAGCTTCG-TCAAAGTATGGGTTTCTGCAATAATCTCTG-TGT 58
Query 78 CTTATTGTTACTACATACCACCTA-GAATCAAAT-CTGGTGctcctcgattcctctctgt 135
|||| |||||||| |||||| | | || ||||| | |||| || |||||| ||||| ||
Sbjct 59 CTTACTGTTACTATATACCATCGAAGA-TCAAAAGC-GGTGTTCATCGATTACTCTCGGT 116
Query 136 ttcccct-gttct-tgctctgtttcttgttcttcctctgtttttc-tcctct-ctgCATT 191
| | || || || || ||||||||||||||||||| ||| ||| || | | | | |||
Sbjct 117 T-CTTCTTGT-CTGTGTTCTGTTTCTTGTTCTTCCTTTGTGCTTCGTCTT-TAC-G-ATT 171
Query 192 TATCT-TTA-ATCACAGCGTTTTTCCTCACATGGCTTGCTAATTTCAAACTCATCCTCTT 249
| ||| || | ||| ||||||| |||| | | ||||||||||| || |||||||| ||
Sbjct 172 T-TCTCTTCCACCACTGCGTTTTGCCTCTCTTTACTTGCTAATTTTAAGCTCATCCTATT 230
Query 250 CT-CCTTCGATAAAGGTCCT-TTAATCCCAATTCCAACAAATTTCCCTC-GATTCTTCTG 306
| |||| || ||||||||| || | ||| |||| || ||| || || ||||| | ||
Sbjct 231 -TGCCTTTGACAAAGGTCCTCTTT-TACCACTTCCCACTAATCTCT-TCCGATTCATATG 287
Query 307 CTTCACTTGCTTCCCCATCAAGGTTCAGCAA-AACCCTAAATCTCAAAACCATTTGCCCA 365
||| |||||||| ||||||||| |||| || |||||||| |||||||| ||| || |
Sbjct 288 CTTTACTTGCTTGCCCATCAAGCTTCAA-AAGAACCCTAACTCTCAAAATCATCCACCTA 346
Query 366 AATTGGTTTTCGCCATTAAA-CTTGCAATCTTTGCAGTGCTATTACAT-TTGTATAGCTA 423
||| ||||||| | |||| || ||||| |||| || | ||| | || ||| |||
Sbjct 347 AATGGGTTTTCTTTAGTAAAGCT-GCAATTTTTGGGGTTTTGTTAAACGTTC-ATAACTA 404
Query 424 CAGACAAAATCTGT--CT-CCGACTATACTATTAGGTCTCTATTTTGTGCATCTCTAC-T 479
| | || | ||| | || | | | ||| || |||||||| ||||||| ||| |
Sbjct 405 TA-A-AAGTT-TGTTGCCACCAATTCTTCTAATATGTCTCTATCCAATGCATCTATACCT 461
Query 480 TAGAGATTGA-GATTATATTAACGTTTGTTAAAGTTGTTGTTTTT-ATC-TCTCTTGGCT 536
| | | |||| | || | ||||| | || || | | ||| || ||| | ||| || |
Sbjct 462 T-GTGCTTGACG-TTCTTTTAACCATCGTCAACGCT-TTGCTTACCATCAT-TCTCGGGT 517
Query 537 GCGATCTTGAGCCACAGTCCAATAAACCGTACTTAGCCACATCTCTACAAGACTTCTGGG 596
|||| || |||||||| | ||| |||| ||||||||||| ||||| |||||||| ||||
Sbjct 518 GCGACCTGGAGCCACATTTCAACGAACCATACTTAGCCACGTCTCTTCAAGACTTTTGGG 577
Query 597 GTCGCCGGTGGAATCTCATGGTTCCGGCGATTCTCCGGCCAGCCGTTTACGCAC-CAATG 655
||||||| ||||| ||||| |||||||| ||| ||||||||| ||| ||| | | ||
Sbjct 578 GTCGCCGTTGGAACCTCATTGTTCCGGCTATTTTCCGGCCAGGCGTCTACTTTCTCG-TG 636
Query 656 CGG-CGAGTCT-CTGAACGCAAAATGAGTTCCGGTTGGGCTCTGTTTCC-GGGGAT-TTT 711
| || || | | ||| | ||||||| || | |||||| ||| | |||| | |||
Sbjct 637 AGTTCG-GTATGCC-AACACCAAATGAGGTCTGATTGGGCAAGGTT-CATGGGG-TGTTT 692
Query 712 GGCAGCGTT-TATCGTCTCCGGTTTGGTTCACGAATTGCTCTTCTTCTATTTGATAC-GT 769
| || | || | |||| || |||||| ||||||| || | | ||| || | | || ||
Sbjct 693 GACAACATTCT-TCGTTTCTGGTTTGATTCACGAGCTGGTATACTTTTACATAA-ACCGT 750
Query 770 GAGATGCCTACA-GGAGAAGTTACTCTG-TTCTTTGTGTTACATGGCGTTTG 819
|||| ||||| || ||||||||| || |||||||| |||||||| |||||
Sbjct 751 GAGACCCCTACTTGG-GAAGTTACT-TGGTTCTTTGTATTACATGGGGTTTG 800
> Ahg495618 jgi|Araly1|495618|fgenesh2_kg.8__1434__AT5G55330.1
Length=1011
Score = 196 bits (106), Expect = 2e-49
Identities = 361/478 (76%), Gaps = 41/478 (9%)
Strand=Plus/Plus
Query 573 CCACATCTCTACAAGACTTCTGGGGTCGCCGGTGGAATCTCATGGTTC-CGGCGATTCTC 631
|||| |||||| | ||||||||||||| ||| ||||| ||||||| || || ||||||
Sbjct 527 CCACCTCTCTATATGACTTCTGGGGTCACCGATGGAACCTCATGG-TCTCGAAGATTCTT 585
Query 632 CGGC-CAGCCGTTTA-CGCACCAATGCGGCGAGTCTCTGAACGCAAAATGAGTTCCG-GT 688
||| | || || || | | || || ||| | | | | | || || ||| |||| |
Sbjct 586 TGGCTC-GCAGTGTACCTC-CCCATACGG-AAATGGC-G-A-GC-CAA-GAGCTCCGAG- 636
Query 689 TGGGCTCTGTT-TCCGGGGATTTT-GGCAGCGTTTATCGTCTCCGGTTTGGTTCACGA-A 745
|||| | ||| | | | |||||| | || |||| ||||||| ||| ||| |||||| |
Sbjct 637 TGGGATAGGTTCTTC-GCGATTTTCGCCA-CGTTCCTCGTCTCTGGTGTGGCTCACGAGA 694
Query 746 TTGCTCTTCTTCTATTTGATACGTGAGATGCCTACA-GGAGAAGTTACTCT-GTTCTTTG 803
|| |||| ||| ||||||| |||||||| ||||||| || || || ||| | ||||||||
Sbjct 695 TT-CTCTACTTTTATTTGACACGTGAGAAGCCTACATGG-GAGGTGACT-TGGTTCTTTG 751
Query 804 TGTTACA-TGGCGTTTGTACT-GCTG-TAGAATTGGCGGTGAAGAAGAAAACGACGGTAG 860
||||||| ||| |||| | | || | | ||| |||| ||||||| ||| |||| | | |
Sbjct 752 TGTTACACGGGC-TTTGCA-TGGCGGCT-GAAGTGGCAGTGAAGAGGAAGACGAAGTTGG 808
Query 861 CACAGCGGTGGC-GGTTGAGTCCGGGGGTGTCGCGGGTTCTCACGGTGGGGTTTGTGTTT 919
|||||||||| || ||| ||||| |||||| | | || ||||||||||||||||||
Sbjct 809 TGCAGCGGTGGCAGG-TGAATCCGGCGGTGTCTAGACTGCTTACGGTGGGGTTTGTGTTT 867
Query 920 GTGACTGGTGGTTGGTTGTTTACACCTCAGCTTAAAAGG-AGCGGGGTGATGGAGAGATT 978
|||||||||| |||| | ||| | ||||||| || ||| | ||| |||||||||||||
Sbjct 868 GTGACTGGTGTTTGGCTATTTTCCCCTCAGCCTATTAGGCA-CGGCTTGATGGAGAGATT 926
Query 979 CA-CATC--TGAAG-CTGTGTTGCTCGTTGAGTTCATTAAGCGATAAGTTATTTTATT 1032
|| |||| ||||| || |||| | |||| ||| |||| || ||||||||| |||
Sbjct 927 CATCATCAATGAAGACT-TGTTTTTAATTGATTTCTTTAATCGC-AAGTTATTT-ATT 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5