BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55350.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495620 jgi|Araly1|495620|fgenesh2_kg.8__1436__AT5G55350.1 1507 0.0
> Ahg495620 jgi|Araly1|495620|fgenesh2_kg.8__1436__AT5G55350.1
Length=1038
Score = 1507 bits (816), Expect = 0.0
Identities = 968/1042 (93%), Gaps = 8/1042 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGAACTCATGAGCTTAATCAAAGTATGGGTTTATGCAATAATCTCCATATCT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATGGAGGAAGAACTCATGAGCTTAATCAAAGTATGGGTTTATGCAACAATCTCCATATCT 60
Query 61 TACTGTTACTACACATCAACAAGAATCAAATCTGGTGTTTTTCGATTACTAtctgttctt 120
|| |||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 61 TATTGTTACTACATATCAACAAGAATCAAAGCTGGTGTTTTTCGATTACTCTCTGTTCTT 120
Query 121 cctgtttgtgttctgtttcttgttctccctctgtttgtttcctctgttcacttttctggt 180
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CCTGTTTGTGTCCTGTTTCTTGTTCTTCCTCTGTTTGTTTCCTCTGTTCACTTTTCTGGG 180
Query 181 tccACAGCATTTTTCCTCTCATGGCTTGCCAATTTCAAACTAATCCTCTTCTCCTTCGAC 240
|||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 181 TCCACAGCATTTTTCCTCGCATGGCTTGCCAATTTCAAACTCATACTCTTCTCCTTCGAC 240
Query 241 CAAGGTCCACTTTTCCCAGTTCCCTCAAATCTCTCCCGATTCGTCTGCTTCACTTGCTTC 300
|||||||| ||||||||| ||||| | |||||||||||| || |||||||||||||||||
Sbjct 241 CAAGGTCCTCTTTTCCCACTTCCCCCTAATCTCTCCCGACTCATCTGCTTCACTTGCTTC 300
Query 301 CCCATCAAGCTTCAACAAAACCCTAAACCTCAAAATCAAATGCCTAAATGGGGTTTCG-C 359
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 301 CCCATCAAGCTTCAACAAAACCCTAAACCTCAAAATCAATTGCCTAAATGGGTTTTCGCC 360
Query 360 AGTTAAACTTGCCT-TCTTTGGTGTGTTGTTGCATATGTATGAATACAAACAACATATGT 418
| ||||||||| || |||||||| ||||||| ||||||||| |||||||||| ||||||
Sbjct 361 A-TTAAACTTG-CTATCTTTGGTTTGTTGTTATATATGTATGCATACAAACAATATATGT 418
Query 419 CTCCGACTGTTCTATTGGTTCTCTATTCTCTGCATATATACTTGGAGTATGAGATTCTCT 478
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CTCCGACTGTGCTATTGGTGCTCTATTCTCTGCATATATACTTGGAGTATGAGATTCTCT 478
Query 479 TAGCTCCCTTGAAAGTTCTGCTTAGTATCTCTCTTTGGT-GCGACCTCGAGCCGCATTTC 537
|||||||||||||||||||||| |||||||||||| ||| |||||||||||||||| |||
Sbjct 479 TAGCTCCCTTGAAAGTTCTGCTCAGTATCTCTCTT-GGTTGCGACCTCGAGCCGCAGTTC 537
Query 538 AATGAACCATACTTATCCACCTCTCTTCAAGACTTCTGGGGTCGTCGATGGAACCTCATG 597
|| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 AACGAACCATACTTAGCCACCTCTCTTCAAGACTTCTGGGGTCGTCGGTGGAACCTCATG 597
Query 598 GTCCCGGCGATTCTCCGGCCGGCTGTCTACCTCCCGGTGCGACAAATGGCCGGTCGGAAA 657
|| || |||||||| ||||||||||| || |||||||| ||| ||||||||||||||||
Sbjct 598 GTTCCAGCGATTCTTCGGCCGGCTGTTTATGTCCCGGTGAGACGAATGGCCGGTCGGAAA 657
Query 658 ATGAACTCTGATCAGGCTTTGTTCTTGGGAGTTTTTGCCTCGTTCCTTGTTTCCGGTGTG 717
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 658 ATGAACTCTGATCAGGCTTTGTTCTTGGGAGTTTTTGCGACGTTCCTTGTCTCCGGTGTC 717
Query 718 GTTCACGAGCTTATTTTCTTCTATTTTACACGTGAATCGCCGACAGGTGAAGTCACTTTG 777
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 718 GTTCACGAGCTGATTTTCTTCTACTTTACACGTGAATCGCCGACAGGTGAAGTCACTTTG 777
Query 778 TTCTTTGTATTACATGGAGTTTGCACTGCCGCTGAATGCGCTGCGAAGAGGACGAGGTTG 837
||||||||| |||||||||||||||||||||||||| | ||||||||||| ||||| |||
Sbjct 778 TTCTTTGTAGTACATGGAGTTTGCACTGCCGCTGAAGGAGCTGCGAAGAGAACGAGCTTG 837
Query 838 GTGCGGCGATGGAAGGTGAGTCAGATGGTTTCACGACTGCTCACGGTGGGATTTGTTGTT 897
|||||||| | |||| |||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 838 GTGCGGCGGTTGAAGATGAGTCAGATGGTTTCCCGACTGCTCACGGTGGGGTTTGTGGTT 897
Query 898 ATGACCGGTGGTTGGTTGTTTTTCCCTCACCTTGCAAGGAGTGGCATGATCGAGAGACTA 957
|||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||
Sbjct 898 GTGACCGGTGGTTGGTTGTTTTTTCCTCAGCTTACAAGGAGTGGCATGATCGAGAGACTT 957
Query 958 GCTGACGAAGCCTTTTTGTTTATTGGTTTCGTCAAGCACAAGTTTTTCTACCTTTGTAGA 1017
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 958 GCTGACGAAGCCTTTTTGTTTATTGATTTCGTCAAGCACAAATTTTTCTACCTTTGGAGA 1017
Query 1018 AACCAATCGCTA-AAATCGTAG 1038
|| |||||||| ||| |||||
Sbjct 1018 AATAAATCGCTACAAA-CGTAG 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5