BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55380.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495621 jgi|Araly1|495621|fgenesh2_kg.8__1437__AT5G55380.1 1744 0.0
> Ahg495621 jgi|Araly1|495621|fgenesh2_kg.8__1437__AT5G55380.1
Length=1244
Score = 1744 bits (944), Expect = 0.0
Identities = 1152/1247 (92%), Gaps = 35/1247 (3%)
Strand=Plus/Plus
Query 13 CGACAGATCTGAGAAATGGAAGAAAAGTTTAGAAACTTAATCGAGGTATGGATCTCTGCT 72
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGACAGATCTGAGATATGGAAGAAAAGTTTAGAAACTTAATCGAGGTATGGATCTCTGCT 60
Query 73 TTAATCTCTCTATCTTACTGTTATTACATATCGTCTAAACTCTCCAAAGGtgttcttcgt 132
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 CTAATCTCTCTATCTTACTGTTATTACATATCATCTAAACTCTCCAAAGGTGTTCTTCGT 120
Query 133 ctcctctctattcttccagtctgcattctgtttcttgttcttcctctgttcctctcttGT 192
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CTCCTCTCTATTCTTCCAATCTGCATTCTGTTTTTTGTTCTTCCTCTGTTCCTCTCTTGT 180
Query 193 GTGCACTTTTGCGCCATTTCAGTTCTTTTTCTTTCATGGCTTGCAAACTTTAAGCTTCTT 252
||||||| |||||||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 181 GTGCACTGTTGCGCCATTTCAGCTCTTTTTCTCTCATGGCTTGCAAACTTCAAGCTTCTT 240
Query 253 CTATTTGCCTTTGATGAGGGACCTTTGTTCCCACTTCCTCCAAAACTCTCCCGTTTCATC 312
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 CTCTTTGCCTTTGATGAAGGACCTTTGTTCCCACTTCCCCCAAAACTCTCCCGTTTCATC 300
Query 313 TGCTTCGCTTGTTTACCCATCAAAATCAGACA-AGACCCTTCTCCAAATGCGATAC-CAA 370
|||||||||||||| ||||||||||||||||| | ||||||||||||||||||| | |||
Sbjct 301 TGCTTCGCTTGTTTGCCCATCAAAATCAGACATA-ACCCTTCTCCAAATGCGAT-CACAA 358
Query 371 ATCTTCATC--C-T----A--AACCTATGCCTAAATGGGTTTTGGCTGTTAAAATTTTGG 421
||||||||| | | | |||||||||||||||||||||||||||| ||||||||||
Sbjct 359 ATCTTCATCTTCGTAAGCATGAACCTATGCCTAAATGGGTTTTGGCTGTCAAAATTTTGG 418
Query 422 TCTTGGGCGTCTTGTTACATGTTTATGAATACAGGGATGGTTTGCCTCGGTTTGTTGTCT 481
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 419 TCTTGGGCGTCTTGTTACATGTCTATGAATACAGGGATGGTTTGCCTCGGTTCGTTGTCT 478
Query 482 TGGCTCTCTATTGTCTCCATATTTACCTTGAGGTAGAACTTGTCTTGGTCTTTGTTGGAG 541
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 479 TGGCTCTCTATTGTCTCCATATATACCTTGAGGTAGAACTTGTCTTGGTGTTTGTTGGGG 538
Query 542 CCGTGGTATCTACTCTTCTTGGGTGTAACATCGAGCCGGTGTTCAATGAGCCCTACCTAG 601
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 CTGTGGTATCTACTCTTCTTGGGTGTAACATCGAGCCAGTGTTCAATGAGCCCTACCTAG 598
Query 602 CTACCTCCCTACAAGACTTCTGGAGCCGCAGATGGAACCTCATGGTTTCAGCCGTCCTAC 661
||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 CTACCTCTCTACAGGACTTCTGGAGCCGCAGATGGAACCTCATGGTTTCAGCTGTCCTAC 658
Query 662 GCTCAACCGTTCACATTCCGGTTCAGCGTTTTTTCAAACGCATACTCAGTCCAGACGGGG 721
||||||| || |||||||| ||||||||||||||||||||| | ||||||||| ||||||
Sbjct 659 GCTCAACTGTCCACATTCCCGTTCAGCGTTTTTTCAAACGCTTGCTCAGTCCAAACGGGG 718
Query 722 CTATGTTTGCTGGGGTCATGGCATCGTTCTTTGTCTCAGGCTTGATGCATGAGCTGCTCT 781
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 719 CTATGTTTGCTGGGGTCATGGCCTCGTTCTTTGTCTCGGGCTTGATGCATGAGCTGCTCT 778
Query 782 ACTTTTACATGATCCGTAAGCCTCCAACTTGGGAAGTCACTTGTTTCTTTGTGTTGCATG 841
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTTCTACATGATCCGTAAGCCGCCAACTTGGGAAGTCACTTGTTTCTTTGTGTTGCATG 838
Query 842 GTGCTGCCACTGCCACTGAGATAGCGGTGAAGAGAACACAATGGTTGAGGCCACCGCACC 901
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 839 GTGCTGCCACTGCCACTGAGATAGGGGTGAAGAGAACACAATGGTGGAGGCCACCGCACC 898
Query 902 GGGCTGTCTCTGGTCTTGTAGTTCTGACGTTTGTGAGTGTGACGGGCGTTTGGCTATTCC 961
|||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGGCTGTCTCCGGTCTTGCAGCTCTGACGTTTGTGAGTGTGACGGGCGTTTGGCTATTCC 958
Query 962 TCGCTCAAGTGCTGAGAAACAATGTCCATGAGAAAGCGATTGGAGAATGTTTATTGGTTC 1021
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 959 TCCCTCAAGTGCTGAGAAACAATGTCCATGAGAAAGCGATTAGTGAATGTTTATTGGTTC 1018
Query 1022 TTGACCTAG-C---C--AAGTTATTCACTTCTTCATGATTCTTTATTAAAGGCAAAGAGC 1075
||||||| | | | |||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1019 TTGACCTTGTCAAACGCAAGTTATTCACTTCGTCATGATTCTTTATTAAAGGCCAAGAGC 1078
Query 1076 GGTAGCAGAGCAACCAAACTT-TG--TTT--------CTCTTCATTGTTTGAAAACGTAT 1124
|||||||||||||||||||| | ||| ||||||||||| |||||||||||
Sbjct 1079 AGTAGCAGAGCAACCAAACTTATTACTTTATTAGTGTCTCTTCATTGTGTGAAAACGTAT 1138
Query 1125 ATAGAAGTGTGAGACACGTCGTCTAGTGTGAAACATTC-TTGACATGCTATTAAATTGAA 1183
||||||||||||||||||| | | |||||| |||||| || ||||| | |||||||||
Sbjct 1139 ATAGAAGTGTGAGACACGTTGGGTGGTGTGAGACATTCATT-ACATGGAACTAAATTGAA 1197
Query 1184 TCAAGCTCAACAAATTCA--ATAAA-TATGGCGTAAATGTTTTCTAA 1227
|||||| |||||| || ||||| |||||||||||||||||||||
Sbjct 1198 TCAAGCGCAACAATTTTTTTATAAAATATGGCGTAAATGTTTTCTAA 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5