BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55400.1
Length=2145
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331870 jgi|Araly1|331870|fgenesh1_pm.C_scaffold_8001213 3504 0.0
Ahg945393 jgi|Araly1|945393|scaffold_701622.1 1755 0.0
> Ahg331870 jgi|Araly1|331870|fgenesh1_pm.C_scaffold_8001213
Length=2142
Score = 3504 bits (1897), Expect = 0.0
Identities = 2057/2135 (96%), Gaps = 7/2135 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGGTTTTGTGGGTGTTATTGTTTCGGATCCATGGTTACAAAGTCAGCTTACACAA 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTGGTTTTGTGGGTGTTATTGTTTCGGATCCATGGTTACAAAGTCAGCTTACACAA 60
Query 61 GTTGAGCTAAGGAGTCTTAATTCCAAGTTTGTTGCGTTGAAGAATCAGAGTGGTAAGGTT 120
|| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GTCGAGCTTCGGAGTCTTAATGCCAAGTTTGTTTCGTTGAAGAATCAGAGTGGTAAGGTT 120
Query 121 ACATTAGAGGATCTTCCATCTGTGTTGGTCAAGGTGAAGTCACTTAGTTCATCATTTAAG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ACATTAGAGGATCTTCCGTCTGTGTTGGTCAAGGTGAAGTCACTTAGTTCAGCATTTAAG 180
Query 181 GAGAAAGAAATCAAAGAAATCTTGGGAGGTTTGGGTTCTGATTATGAAAGTGATGATGAT 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAAAGAAATCAGAGAAATCTTGGGAGGTTTGGGTTCTGATTATGAAAGTGATGATGAT 240
Query 241 CTTGATTTCGAATCGTTTCTCAAGGTATATCTAAACTTGCGAGATAAAGCTGCTGATAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTGATTTCGAATCGTTTCTCAAGGTATATCTAAACTTGCGAGATAAAGCTGCTGATAAA 300
Query 301 GCTGGTGGTGGTCTTAAGCATTCATCTTCATTTCTTAAAGCCGGCACTACGACTCTTCAT 360
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 --T-CTGGTGGTCTTAAGCATTCATCTTCATTTCTTAAAGCCGGCACAACGACTCTTCAT 357
Query 361 ACCATAAACCAGTCAGAGAAGGGTTCTTTTGTTCTTCACATCAATAGATATCTTGGGGAT 420
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 358 ACCATAAACCAGTCAGAGAAGGGTTCCTTTGTTCTTCACATTAACAGATATCTTGGGGAT 417
Query 421 GACCCGTTTTTGAAGCAATTTCTTCCTTTAGATCCGGATTCAAATGATTTGTATGAACTT 480
||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 GACCCGTTTTTGATGCAGTTTCTTCCTTTAGATCCGGATTCAAATGACTTGTATGAACTT 477
Query 481 GTGAAAGATGGTGTGCTTTTATGTAAGCTTATAAATATAGCAGTTCCTGGGACAATAGAT 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 GTGAAAGATGGTGTGCTTTTATGTAAGCTTATTAATATAGCAGTTCCTGGGACAATAGAT 537
Query 541 GAACGAGCGATCAACACGAAAAGGGTACTTAACCCATGGGAGAGAAATGAGAATCACACG 600
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAACGAGCCATCAACACGAAAAGGGTACTTAACCCATGGGAGAGAAATGAGAATCACACG 597
Query 601 CTCTGTCTTAACTCTGCAAAAGCTGTTGGCTGCAGTGTGGTTAATATCGGGACTCAGGAC 660
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 CTCTGTCTCAACTCTGCGAAAGCTGTTGGCTGCAGTGTGGTTAATATTGGGACTCAGGAC 657
Query 661 CTGGCTGAAGGACGACCTCATCTGGTGCTTGGATTGATCTCACAACTCATAAAGATTCAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTGGCTGAAGGACGACCTCATCTGGTGCTTGGATTGATCTCACAACTCATAAAGATTCAA 717
Query 721 CTGCTTGCCGATCTTAGTTTAAAGAAGATGCCTCAGCTTGTTGAGTTGGTGGAGGACAAC 780
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 718 CTGCTCGCTGATCTTAGTTTGAAGAAGATGCCTCAACTTGTTGAGTTGGTGGAGGACAAC 777
Query 781 GAGGATATAGAAGAATTTCTGAGATTACCCCCAGAGAAAGTCTTGCTCAAATGGATGAAC 840
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 778 GAGGATATAGAAGAATTTCTGAGATTACCTCCTGAGAAAGTCTTACTCAAATGGATGAAC 837
Query 841 TTCCATCTCAAGAAAGGTGGTTACaaaaaaaCTGTTGGAAATTTTTCATCGGATCTGAAG 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTCCATCTCAAGAAAGGCGGTTACAAAAAAACTGTTGGAAATTTTTCATCGGATCTGAAG 897
Query 901 GACGCACAGGCCTATGCTTACCTGCTTAATGTTCTCGCACCAGAGCATTGTGATCCAGCA 960
|| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 898 GATGCACAGGCCTATGCTTATCTTCTTAATGTTCTCGCACCAGAGCATTGTGATCCAGCT 957
Query 961 ACTCTAAATGCAGAGGATGATCTTGAAAGGGCTAACATGGTCCTCGAACACGCAGAGAGA 1020
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 ACACTAAATGCAGAGGATGATCTTGAAAGGGCTAACATGGTCCTCGAACACGCAGAGAGA 1017
Query 1021 ATGAACTGCAAACGGTATTTGACTGCAGAGGAGA-TAGTTGAGGGGTCTTCGTATTTGAA 1079
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1018 ATGAACTGCAAACGGTATTTGACTGCAGAGGA-ACTAGTTGAGGGGTCTTCGTATTTGAA 1076
Query 1080 TCTAGCATTTGTGGCACAGATATTTCATGAAAGGAATGGCCTTAGCACTGATGGTAGATT 1139
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1077 TCTCGCATTTGTGGCACAGATATTTCACGAAAGGAATGGCCTTAGCACTGATGGTAGGTT 1136
Query 1140 CTCCTTTGCGGAGATGATGACTGAGGATTTACAGACTTGCAGAGACGAAAGATGTTACCG 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 CTCCTTTGCGGAGATGATGACTGAGGATTTACAGACTTGCAGAGATGAAAGATGTTACCG 1196
Query 1200 GCTATGGATTAACAGCCTCGGGATTGAGAGTTACGTCAATAATGTGTTTGAAGATGTTAG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GCTATGGATTAACAGCCTCGGGATTGAGAGTTACGTCAATAATGTGTTTGAAGATGTTAG 1256
Query 1260 AAACGGATGGATTCTTCTGGAAGTTGTTGATAAGGTCTATCCAGGCTCAGTTAACTGGAA 1319
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1257 AAACGGATGGATTCTTCTGGAAGTTGTCGACAAGGTCTATCCAGGCTCAGTTAACTGGAA 1316
Query 1320 GCAGGCTTCAAAACCACCAATTAAGATGCCGTTTAGAAAAGTAGAGAATTGCAATCAAGT 1379
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1317 GCAGGCTTCAAAACCACCAATTAAAATGCCTTTTAGAAAAGTAGAGAATTGCAATCAAGT 1376
Query 1380 CGTGAAGATTGGGAAAGAGATGAGATTCTCGCTCGTAAATGTAGCTGGAAATGACATTGT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1377 CGTGAAGATTGGGAAAGAGATGAGATTCTCGCTCGTAAATGTAGCTGGAAATGACATAGT 1436
Query 1440 TCAAGGAAATAAAAAGCTTATCCTCGGCTTCTTATGGCAGTTGATGAGAACACATATGCT 1499
|||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1437 TCAAGGGAATAAGAAGCTTATCCTCGGCTTCTTGTGGCAGTTGATGAGAACCCATATGCT 1496
Query 1500 CCAACTTCTCAAGAGTCTAAGATCTCGGACACGAGGAAAAGACATGACCGACTCAGAAAT 1559
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 CCAACTTCTCAAGAGTCTCAGATCTCGGACACGAGGAAAAGACATGACCGACTCAGAAAT 1556
Query 1560 CATAAGCTGGGCTAACAGGAAAGTCAGAATCATGGGGCGGAAATCGCAGATCGAAAGCTT 1619
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CATAAGCTGGGCAAACAGAAAAGTCAGAATCATGGGGCGGAAATCGCAGATCGAAAGCTT 1616
Query 1620 CAAGGATAAAAGTCTATCGAGCGGATTATTCTTCCTCGATCTTCTATGGGCGGTTGAGCC 1679
||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1617 CAAGGATAAGAGTCTATCCAGCGGATTATTCTTCCTCGATCTCCTATGGGCGGTTGAGCC 1676
Query 1680 AAGAGTTGTTAACTGGAATCTTGTCACCAAGGGTGAATCAGACGATGAGAAGAGATTGAA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AAGAGTTGTTAACTGGAATCTTGTCACCAAGGGTGAATCAGACGATGAGAAGAGATTGAA 1736
Query 1740 TGCTACATACATTGTCAGCGTAGCAAGAAAGCTTGGTTGCTCGGT-TTTCTTGTTGCCAG 1798
|||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| |
Sbjct 1737 TGCTACATACATTGTCAGCGTAGCAAGAAAGCTTGGTTGCTCTGTCTTT-TTGTTGCCGG 1795
Query 1799 AAGATATCGTGGAGGTGAATCAAAAGATGATACTAATCCTAACGGCAAGTATAATGTATT 1858
||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 1796 AAGATATAGTGGAGGTGAATCAGAAGATGATTCTAATCTTAACGGCAAGTATAATGTATT 1855
Query 1859 GGAGCCTTCAACAACAATCATCATCGTCAGAGAGTTCAAGTTCGAGTTCAGACTCATCAT 1918
|||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1856 GGAGCCTTCAGCAACAATCATCATCGTCAGAGAGTTCAAGTTCGAGTTCGGATTCATCAT 1915
Query 1919 CAACTCATAGCACGACGACGACATGCACTAGCACATGCACGAGCACTGATGCTTCACCAG 1978
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CGACTCACAGCACGACTACGACATGCACTAGCACATGCACGAGCACTGATGCTTCACCAG 1975
Query 1979 CTCCATCTGTCACGGGTGAAGACGAAGTCTCTTCTTTAAATGGCGAAGTCTCAAGCCTAA 2038
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1976 CTCCATCTGTCACGGGTGAAGACGAAGTTTCTTCTTTAAATGGCGAAGTCTCAAGCCTAA 2035
Query 2039 CGATAGAAGAAGACAATGAAGTCTCGAGCCTAACGATAGAAGAAGACAATGACGCAGACA 2098
| || |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2036 CCATCGAAGAAGACAATGAAGTCTCGAGCCTAACGATGGAAGAAGACAATGACGCAGAGA 2095
Query 2099 TTTTGTCAGATATCACCTCCATCTCAGAGGAAGCA 2133
|||||||||||||||||||||||||||||||||||
Sbjct 2096 TTTTGTCAGATATCACCTCCATCTCAGAGGAAGCA 2130
> Ahg945393 jgi|Araly1|945393|scaffold_701622.1
Length=2116
Score = 1755 bits (950), Expect = 0.0
Identities = 1590/1895 (84%), Gaps = 60/1895 (3%)
Strand=Plus/Plus
Query 1 ATGTCTGGTTTTGTGGGTGTTATTGTTTCGGATCCATGGTTACAAAGTCAGCTT-ACACA 59
|||||||| || ||||||||| | |||||||||||||| |||| || ||| || || ||
Sbjct 24 ATGTCTGGGTTCGTGGGTGTTGTCCTTTCGGATCCATGGCTACAGAGCCAG-TTCACTCA 82
Query 60 AGTTGAGCTAAGGAGTCTTAATTCCAAGTTTGTTG-CGT-TGAAGAATCAGAGTGGTAAG 117
||| || || ||| ||| |||||||||| || || | | |||||||||||||||| |||
Sbjct 83 AGTCGAACTTCGGACTCTCAATTCCAAGTATG-TGTC-TATGAAGAATCAGAGTGGAAAG 140
Query 118 GTTAC-ATTAGAGGATCTTCCAT-CTGTGTTGGTC-AAGGTGAAGTCACTTAGTTCATCA 174
| || ||| || ||| ||| | || | |||| | ||| | ||| |||||||| || ||
Sbjct 141 ATCACTATT-GAATATC-TCCCTCCTCTATTGG-CAAAGCTCAAGGCACTTAGTGCAACA 197
Query 175 TTTAAGGAGAAAGAAATCAAAGAAAT-CT-TGGGAGGTTTGGGTTCTGATTATGAAAGTG 232
||||||||| | |||||||| | || || |||| | |||||||||| || |||
Sbjct 198 TTTAAGGAGGATGAAATCAAGGGGATACTAGGGGAAG--TGGGTTCTGA-TA--CAAG-C 251
Query 233 ATGATGATCTTGA-TTTCGAATCGTTTCTCAAGGTATATCTAAACTTGC-GAGATAAAGC 290
| |||| ||| ||| ||| |||||||||| ||||||| ||||| | || ||||||
Sbjct 252 A--CTGAT-GTGAGTTTTGAAGAGTTTCTCAAGATATATCTCAACTTACTAAG-TAAAGC 307
Query 291 TGCTGATAAAGCTGGTGGTGGTCTTAAGCATTCATCTTCATTTCTTAAAGCCGGCACTAC 350
||||| ||| | |||||||| |||| | ||||| || ||||||||| | | || ||
Sbjct 308 AGCTGAGAAA--T-CTGGTGGTCATAAGAACTCATCCTCGTTTCTTAAATCTTGTACAAC 364
Query 351 G--AC-TCTTCATACCATAAACCAGTCAGAGAAGGGTTCTTTTGTTCTTCACATCAATAG 407
| || |||||| || ||| | ||||| ||||||||||||||||||| |||||||||||
Sbjct 365 GACACTTCTTCACACTATATATCAGTCGGAGAAGGGTTCTTTTGTTCAGCACATCAATAG 424
Query 408 ATATCTTGGGGATGACCCGTTTTTGAAGCAATTTCTTCCT-TTAGATCCGGATTCAAATG 466
||||||| ||||||||| ||||||||||| || |||||| || || || |||| ||||
Sbjct 425 ATATCTTAAGGATGACCCCTTTTTGAAGCAGTTCCTTCCTCTT-GACCCTCATTCTAATG 483
Query 467 ATTTGTATGAACTTGTGAAAGATGGTGTGCTT-TTATGTAAGCTTATAAATATAGCAGTT 525
| |||||||||||||||||||||||||| ||| || ||||||||||||||| ||||||||
Sbjct 484 AATTGTATGAACTTGTGAAAGATGGTGTACTTCTT-TGTAAGCTTATAAATGTAGCAGTT 542
Query 526 CCTGGGACAATAGATGAACGAGCGATCAACACGAAAAGGGTACTTAACCCATGGGAGAGA 585
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 543 CCTGGGACAATAGATGAACGAGCGATCAACACGAAGAGGGTACTTAATCCGTGGGAGAGA 602
Query 586 AATGAGAATCACACGCTCTGTCTTAACTCTGCAAAAGCTGTTGGCTGCAGTGTGGTTAAT 645
||||||||||||||||| ||||| |||||||| |||||| |||| ||| ||| ||||||
Sbjct 603 AATGAGAATCACACGCTTTGTCTAAACTCTGCTAAAGCTATTGGATGCTCTGTTGTTAAT 662
Query 646 ATCGGGACTCAGGACCTGGCTGAAGGACGACCTCATCTGGTGCTTGGATTGATCTCACAA 705
|| ||||| |||||||| || |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 663 ATTGGGACACAGGACCTTGCCGAAGGACGGCCTCACCTGGTGCTTGGATTGATTTCACAA 722
Query 706 CTCATAAAGATTCAACTGCTTGCCGATCTTAGTTTAAAGAAGATGCCTCAGCTTGTTGAG 765
||||||||||||||||| ||||| ||||| | ||||||||||| ||||||||||||||||
Sbjct 723 CTCATAAAGATTCAACTACTTGCTGATCTCAATTTAAAGAAGACGCCTCAGCTTGTTGAG 782
Query 766 TTGGTGGAGGACAACGAGGATATAGAAGAATTTCTGAGATTACCCCCAGAGAAAGTCTTG 825
|| | ||||||| ||| ||| | || || || |||||||||||||| |||||||||||
Sbjct 783 CTGCTTGAGGACAGCGATGATGTCGAGGAGTTGCTGAGATTACCCCCTGAGAAAGTCTTA 842
Query 826 CTCAAATGGATGAACTTCCATCTCAAGAAAGGTGGTTACaaaaaaaCTGT-TGGAAATTT 884
|| |||||||||||||||||||| |||||||| |||||||| |||||||| | ||| ||
Sbjct 843 CTGAAATGGATGAACTTCCATCTTAAGAAAGGGGGTTACAAGAAAACTGTCTC-AAACTT 901
Query 885 TTCATCGGATCTGAAGGACGCACAGGCCTATGC-TTACCTGCTTAATGTTCTCGCACCAG 943
||| | ||| ||||||| ||||| |||||||| || | |||| |||||||||||||| |
Sbjct 902 TTCCGCAGATTTGAAGGATGCACAAGCCTATGCCTTTC-TGCTCAATGTTCTCGCACCTG 960
Query 944 AGCATTGTGATCCAGCAACTCTAAATGCAGAGGATGATCTTGAAAGGGCT-AACATGGTC 1002
| || ||||| || || || ||| ||||| ||||| ||||||||||||| ||| ||||
Sbjct 961 AACACTGTGACCCGGCTACACTAGATGCAAAGGATCCTCTTGAAAGGGCTGAAC-TGGTT 1019
Query 1003 CTC-GAACACGCAGAGAGAATGAACTGCAAACGGTATTTGACTGCAGAGGAGATAGTTGA 1061
||| | || |||||||||||||||||||| || || ||||||||||| ||||| |||||
Sbjct 1020 CTCAGT-CATGCAGAGAGAATGAACTGCAAGCGATACTTGACTGCAGAAGAGATCGTTGA 1078
Query 1062 GGGGTCTTCGTA-TTTGAATCTAGCATTTGTGGCACAGATATTTCATGAAAGGAATGGCC 1120
|| ||| | | ||||||||| || ||||||||||| ||||| |||||||||||||| |
Sbjct 1079 AGGATCTCCA-ACTTTGAATCTTGCCTTTGTGGCACAAATATTCCATGAAAGGAATGGTC 1137
Query 1121 TTAGCACTGATGGTA-G-ATTCTCCTTTGCGGAGATGATGACTGAGGATTTACAGACTTG 1178
| | || ||||||| | |||| ||||||||||||||||| || ||| ||||||||||
Sbjct 1138 TAAATACCGATGGTAAGTATTCA--TTTGCGGAGATGATGACCGAAGATGTACAGACTTG 1195
Query 1179 CAGAGACGAAAGATGTTACCGGCTATGGATTAACAGCCTCGGGATTGAGAGTTACGTCAA 1238
||||| ||| |||| |||||||||||||| |||||||| |||||||| | ||| |||||
Sbjct 1196 TAGAGAGGAACGATGCTACCGGCTATGGATCAACAGCCTGGGGATTGACATTTATGTCAA 1255
Query 1239 TAATGTGTTTGAAGATGTTAGAAACGGATGGATTCTTCTGGAAGTTGTTGATAAGGTCTA 1298
|||||| ||||||||||||||||| |||||||||||||| |||||| |||| ||| |||
Sbjct 1256 TAATGTATTTGAAGATGTTAGAAATGGATGGATTCTTCTTGAAGTTCTTGACAAGATCTC 1315
Query 1299 TCCAGGCTCAGTTAACTGGAAGCAGGCTTCAAAACCACCAATTAAGATGCCGTTTAGAAA 1358
||| || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1316 TCCCGGTTCAGTCAACTGGAAGCATGCTTCCAAACCGCCAATTAAGATGCCGTTTAGAAA 1375
Query 1359 AGTAGAGAATTGCAATCAAGTCGTGAAGATTGGGAAAGAGATGAGATTCTCGCTCGTAAA 1418
||||||||| |||||||||||||| ||||| |||||| || | | |||||| || || ||
Sbjct 1376 AGTAGAGAACTGCAATCAAGTCGTAAAGATCGGGAAACAGCTAAAATTCTCACTTGTGAA 1435
Query 1419 TGTAGCTGGAAATGACATTGTTCAAGGAAATAA-AAAGCTTATCCTCGG-CTTCTTATGG 1476
||||||||||||||| || |||||||| ||||| ||| || || || || || |||||||
Sbjct 1436 TGTAGCTGGAAATGATATAGTTCAAGGGAATAAGAAA-CTCATTCTTGGTCT-CTTATGG 1493
Query 1477 CAGTTGATGAGAA-CACATATGCTCCAACTTCTCAAGAGTCTAAGATCTCGGACACGAGG 1535
|||||||||||| | |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1494 CAGTTGATGAGATTC-CATATGCTCCAACTTCTCAAGAGTCTCCGATCTCGGACACAAGG 1552
Query 1536 AAAAGACATGACCGACT-CAGAAATCATAAGCTGGGCTAACAGGAAAGT-CAGAATCATG 1593
||||| ||||| || | | || ||| | |||||||| ||||||||||| | ||| ||||
Sbjct 1553 TAAAGAGATGACTGA-TGCGGATATCCTCAGCTGGGCCAACAGGAAAGTAC-GAACCATG 1610
Query 1594 GGGCGGAAATCGCAGATCGAAAGCTTCAAGGATAAAAGTCTATCGAGCGGATTATTCTTC 1653
||||| |||| ||| ||||| || |||||||| || |||||||||||||| ||||||||
Sbjct 1611 GGGCGAAAATTGCAAATCGAGAGTTTCAAGGACAAGAGTCTATCGAGCGGGGTATTCTTC 1670
Query 1654 CTCGATCTTCTATGGGCGGTTGAGCCAAGAGTTGTTAACTGGAATCTTGTCACCAAGGGT 1713
||| | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1671 CTCAACCTTTTATGGGCGGTTGAGCCAAGAGTTGTAAACTGGAATCTTGTCACCAAGGGT 1730
Query 1714 GAATCAGACGATGAGAAGAGATTGAATGCTACATACATTGTCAGCGTAGCAAGAAAGCTT 1773
||| |||| |||||||| || ||||||||||||||||| || ||||| |||||||||||
Sbjct 1731 GAAACAGATGATGAGAAAAGGTTGAATGCTACATACATAGTTAGCGTCGCAAGAAAGCTC 1790
Query 1774 GGTTGCTCGGTTTTCTTGTTGCCAGAAGATATCGTGGAGGTGAATCAAAAGATGATACTA 1833
||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 1791 GGTTGTTCGGTTTTCTTGTTGCCTGAAGATATTGTGGAGGTGAATCAGAAGATGATTTTA 1850
Query 1834 ATCCTAACGGCAAGTATAATGTATTGGAGCCTTCA 1868
||| ||||||||||||||||||| ||||| |||||
Sbjct 1851 ATCTTAACGGCAAGTATAATGTACTGGAGTCTTCA 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80713229155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5