BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G55420.1
Length=317
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495626 jgi|Araly1|495626|fgenesh2_kg.8__1442__AT5G55420.1 363 6e-100
> Ahg495626 jgi|Araly1|495626|fgenesh2_kg.8__1442__AT5G55420.1
Length=256
Score = 363 bits (196), Expect = 6e-100
Identities = 239/259 (92%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 16 ATCCTGATGCAATTTGCAGCTCTTGCGATGGTTTTAACGGCTGCAATAATGGTGAAAGAA 75
||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1 ATCCTGATGCAATTTTCAGCTCTTGCGGTGGTTTTAACCGCTGCAATAATGGTGAAAGAG 60
Query 76 GCTAGAAGCATTCCCATTTGCAACATCGAGACAAATGACTTGGTCAAATGTCATCCAGCT 135
|||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 61 GCTACAAGCATTCCCATTTGCAACATCGAGACAAATGACTTGGGAAAATGTGGTCCAGCT 120
Query 136 TTCACTGGAATTGAAACAACCCGCCACCTCCGGGACCTGACTGTTGCGCATTGGTCAGAG 195
||||| || | | |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 121 TTCACAGGCA---A--CAACCCGCCACCTCCGGGACCTGACTGTTGCGCAGTGGTCAAAG 175
Query 196 CCGCTAATCTACAATGCCTTTGCCCGTACAAGCCTTATCTCTCCAGGTTTGGGATTGATC 255
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 176 CCGCTAATCTACAATGCCTTTGCCCGTACAAGCCTTTTCTCTCCAGGTTTGGGATTGATC 235
Query 256 CATCTAAAGTCAGGCCTCT 274
|| ||||||||||||||||
Sbjct 236 CAACTAAAGTCAGGCCTCT 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11179587577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5